Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 0.0e+00 1167.5 681 100.0
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 0.0e+00 1116.3 681 95.9
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 2.0e-233 812.8 676 67.6
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 2.3e-208 729.6 857 58.0
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 1.5e-167 594.0 715 50.6
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 8.2e-158 561.6 701 51.6
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 4.8e-150 535.8 674 55.9
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 9.1e-149 531.6 698 49.7
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 1.5e-146 524.2 782 48.1
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 3.2e-146 523.1 767 47.2
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 9.1e-141 505.0 706 49.7
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 2.7e-140 503.4 664 48.9
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 1.5e-114 417.9 808 39.0
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.6e-105 387.9 884 38.8
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.7e-102 377.9 700 39.9
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 1.5e-79 301.6 468 42.7
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 7.6e-79 299.3 733 35.2
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 2.1e-76 291.2 717 35.8
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.5e-74 284.3 697 38.3
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.5e-74 284.3 697 38.3
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 9.6e-74 282.3 669 33.6
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.3e-73 282.0 713 39.8
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 9.0e-72 275.8 703 32.9
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 9.9e-71 272.3 711 33.8
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 6.4e-70 269.6 714 33.3
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 3.2e-69 267.3 715 32.0
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 5.5e-69 266.5 703 33.0
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 7.1e-69 266.2 857 28.6
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 3.5e-68 263.8 713 33.0
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 6.0e-68 263.1 741 33.1
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 6.0e-68 263.1 704 33.5
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 1.8e-67 261.5 855 30.5
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 8.7e-67 259.2 690 32.5
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 1.5e-66 258.5 707 33.8
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 4.3e-66 256.9 795 33.1
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 7.4e-66 256.1 689 34.0
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 1.6e-65 255.0 724 32.0
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 2.8e-65 254.2 848 30.1
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 4.8e-65 253.4 664 37.3
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.1e-64 252.3 703 32.1
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 3.1e-64 250.8 827 28.9
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 5.3e-64 250.0 673 33.9
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.3e-62 245.4 667 32.5
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 1.3e-62 245.4 717 33.1
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 1.7e-62 245.0 799 33.0
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 8.4e-62 242.7 734 32.7
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 4.6e-60 236.9 661 32.4
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.0e-59 235.7 675 32.7
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 8.7e-59 232.6 682 33.6
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.5e-58 231.9 683 33.1
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 7.4e-58 229.6 662 32.6
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 3.7e-57 227.3 666 32.6
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 4.8e-57 226.9 696 30.6
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 1.1e-56 225.7 707 32.0
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 4.1e-56 223.8 350 45.4
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 2.0e-55 221.5 684 30.4
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 5.9e-55 219.9 666 33.8
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.0e-54 219.2 694 31.6
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 8.5e-54 216.1 711 30.2
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 7.2e-53 213.0 665 31.1
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 6.1e-52 209.9 704 29.3
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 7.9e-52 209.5 682 30.2
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 3.9e-51 207.2 712 29.6
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 1.1e-50 205.7 704 29.3
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.9e-50 204.9 721 33.7
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.3e-50 204.1 725 30.3
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 5.7e-50 203.4 710 29.2
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 9.7e-50 202.6 699 32.8
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 1.6e-49 201.8 682 32.4
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 2.8e-49 201.1 735 29.7
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 4.8e-49 200.3 669 31.5
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 1.1e-48 199.1 711 30.2
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 1.4e-48 198.7 706 28.9
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.8e-48 198.4 664 34.5
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 3.4e-47 194.1 421 35.9
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 5.9e-47 193.4 643 28.1
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 2.5e-45 188.0 654 33.8
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 4.2e-45 187.2 750 28.8
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 2.3e-43 181.4 582 31.3
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 1.1e-42 179.1 667 28.5
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 2.0e-42 178.3 688 29.5
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 3.3e-42 177.6 685 29.6
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 7.4e-42 176.4 656 29.3
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 7.4e-42 176.4 753 28.3
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 2.8e-41 174.5 655 30.7
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 4.8e-41 173.7 679 28.6
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 6.3e-41 173.3 670 27.9
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 1.4e-40 172.2 658 29.2
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 1.4e-40 172.2 658 29.2
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 2.4e-40 171.4 315 39.0
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 5.3e-40 170.2 659 27.6
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 5.3e-40 170.2 752 26.9
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 1.5e-39 168.7 727 27.4
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 1.7e-38 165.2 900 25.1
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 6.5e-38 163.3 664 31.0
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 1.9e-37 161.8 580 29.3
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.5e-37 161.4 611 33.4
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 4.2e-37 160.6 673 27.5
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 7.2e-37 159.8 733 27.1
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 7.2e-37 159.8 652 27.9
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 9.4e-37 159.5 639 27.2
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.6e-36 158.7 652 28.4
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 2.1e-36 158.3 668 26.3
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 2.3e-35 154.8 724 26.5
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 3.0e-35 154.5 759 26.7
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 4.4e-34 150.6 353 34.3
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 4.4e-34 150.6 170 52.9
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 1.3e-33 149.1 652 28.2
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 1.3e-33 149.1 726 26.3
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 1.3e-33 149.1 857 25.7
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 6.3e-33 146.7 845 23.8
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 4.1e-32 144.1 697 24.8
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 2.0e-31 141.7 666 26.0
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 2.0e-31 141.7 627 25.8
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.6e-31 141.4 181 47.5
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 5.0e-30 137.1 699 26.3
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 5.0e-30 137.1 403 33.5
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 6.5e-30 136.7 668 25.0
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 8.0e-28 129.8 753 25.1
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 3.3e-26 124.4 251 37.5
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.2e-25 121.7 625 26.6
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 2.2e-25 121.7 715 24.8
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.1e-21 109.4 132 49.2
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.5e-21 109.0 177 39.5
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 1.2e-20 105.9 87 50.6
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 1.0e-19 102.8 330 33.0
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 1.4e-19 102.4 369 33.1
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 3.0e-19 101.3 120 50.8
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 1.7e-17 95.5 265 30.9
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 1.7e-17 95.5 647 24.7
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 4.8e-17 94.0 112 46.4
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 2.4e-16 91.7 168 36.9
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 2.7e-15 88.2 177 36.7
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 3.5e-15 87.8 99 51.5
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 2.5e-13 81.6 214 32.2
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 3.2e-13 81.3 83 49.4
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 2.1e-12 78.6 84 45.2
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 6.1e-12 77.0 151 37.1
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 6.1e-12 77.0 636 20.9
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 8.0e-12 76.6 655 23.5
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 5.2e-11 73.9 86 44.2
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 2.0e-10 72.0 132 37.1
TPR.G8483 Trifolium pratense HOM05D004831 ORTHO05D048837 5.7e-10 70.5 186 37.1
Medtr3g434860 Medicago truncatula HOM05D004831 ORTHO05D048837 1.7e-06 58.9 149 36.2
Cre02.g079250 Chlamydomonas reinhardtii HOM05D004831 ORTHO05D003975 8.6e-06 56.6 72 45.8


User provided reference genes

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