Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3AE437 Arachis hypogaea HOM05D006393 ORTHO05D008088 2.8e-158 562.0 302 100.0
arahy.Tifrunner.gnm1.ann1.RZM4QH Arachis hypogaea HOM05D006393 ORTHO05D008088 1.5e-151 539.7 303 96.4
Lalb_Chr13g0302251 Lupinus albus HOM05D006393 ORTHO05D008088 4.2e-130 468.4 282 85.1
Ca_21724_v3 Cicer arietinum L. HOM05D006393 ORTHO05D008088 6.3e-126 454.5 280 81.8
TPR.G26762 Trifolium pratense HOM05D006393 ORTHO05D008088 9.0e-125 450.7 289 79.9
Psat4g042480 Pisum sativum HOM05D006393 ORTHO05D008088 3.8e-123 445.3 289 78.9
Phvul.003G159300 Phaseolus vulgaris HOM05D006393 ORTHO05D008088 1.9e-122 443.0 282 80.9
VMungo1215G0586 Vigna mungo HOM05D006393 ORTHO05D008088 4.2e-122 441.8 283 80.6
Medtr4g112990 Medicago truncatula HOM05D006393 ORTHO05D008088 2.7e-121 439.1 288 77.1
Glyma.17G120200 Glycine max HOM05D006393 ORTHO05D008088 1.8e-120 436.4 294 79.9
CiPaw.03G236400 Carya illinoinensis HOM05D006393 ORTHO05D008088 1.7e-118 429.9 280 76.1
RcHm_v2.0_Chr2g0089771 Rosa chinensis HOM05D006393 ORTHO05D008088 1.8e-117 426.4 280 75.7
Hma1.2p1_0018F.1_g013070 Hydrangea macrophylla HOM05D006393 ORTHO05D008088 2.4e-117 426.0 282 75.5
Prupe.7G235100 Prunus persica HOM05D006393 ORTHO05D008088 2.4e-117 426.0 280 77.1
Lj4g0026371 Lotus japonicus HOM05D006393 ORTHO05D008088 1.2e-116 423.7 278 77.7
FvH4_1g04221 Fragaria vesca HOM05D006393 ORTHO05D008088 1.5e-116 423.3 280 75.4
Thecc.09G116800 Theobroma cacao HOM05D006393 ORTHO05D008088 7.7e-116 421.0 280 74.3
Ciclev10008889m.g Citrus clementina HOM05D006393 ORTHO05D008088 3.8e-115 418.7 280 75.4
Cfa003299 Carpinus fangiana HOM05D006393 ORTHO05D008088 8.5e-115 417.5 280 75.7
Atru.chr7.1280 Acer truncatum HOM05D006393 ORTHO05D008088 1.9e-114 416.4 280 74.3
Haze_25669 Corylus avellana HOM05D006393 ORTHO05D008088 3.2e-114 415.6 280 76.1
MD02G1061500 Malus domestica HOM05D006393 ORTHO05D008088 3.2e-114 415.6 280 74.3
QL02p086364 Quercus lobata HOM05D006393 ORTHO05D008088 4.2e-114 415.2 279 73.8
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 5.5e-114 414.8 280 72.9
CSS0031330 Camellia sinensis var. sinensis HOM05D006393 ORTHO05D008088 7.2e-114 414.5 279 74.2
Potri.018G073000 Populus trichocarpa HOM05D006393 ORTHO05D008088 1.2e-113 413.7 279 74.9
GSVIVG01015453001 Vitis vinifera HOM05D006393 ORTHO05D008088 4.7e-113 411.8 280 73.6
Gorai.010G068300 Gossypium raimondii HOM05D006393 ORTHO05D008088 6.1e-113 411.4 280 73.6
Gohir.D06G058100 Gossypium hirsutum HOM05D006393 ORTHO05D008088 7.9e-113 411.0 280 73.2
Rhsim01G0090600 Rhododendron simsii HOM05D006393 ORTHO05D008088 7.9e-113 411.0 289 71.6
MELO3C025307.2 Cucumis melo HOM05D006393 ORTHO05D008088 1.0e-112 410.6 279 74.2
Duzib168G1441 Durio zibethinus HOM05D006393 ORTHO05D008088 1.4e-112 410.2 279 73.5
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 1.4e-112 410.2 280 73.6
CsaV3_1G030940 Cucumis sativus L. HOM05D006393 ORTHO05D008088 1.8e-112 409.8 279 73.5
Manes.16G064200 Manihot esculenta HOM05D006393 ORTHO05D008088 1.8e-112 409.8 280 73.2
PGR102G0276 Punica granatum HOM05D006393 ORTHO05D008088 2.3e-112 409.5 280 74.3
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 3.0e-112 409.1 280 73.2
TWI34G1546 Tripterygium wilfordii HOM05D006393 ORTHO05D008088 3.9e-112 408.7 280 73.2
Cpa.g.sc23.161 Carica papaya HOM05D006393 ORTHO05D008088 1.1e-111 407.1 280 72.9
Aqoxy7G01879 Aquilegia oxysepala HOM05D006393 ORTHO05D008088 3.3e-111 405.6 279 72.8
vmacro20677 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 7.4e-111 404.4 279 72.0
AT5G19930 Arabidopsis thaliana HOM05D006393 ORTHO05D008088 2.2e-110 402.9 282 71.6
PSO782G0281 Papaver somniferum HOM05D006393 ORTHO05D008088 2.8e-110 402.5 282 71.6
Hund09172 Selenicereus undatus HOM05D006393 ORTHO05D008088 6.3e-110 401.4 280 70.0
Sopen10g030590 Solanum pennellii HOM05D006393 ORTHO05D008088 1.1e-109 400.6 279 71.7
Nn8g39292 Nelumbo nucifera HOM05D006393 ORTHO05D008088 1.8e-109 399.8 280 72.5
Sed0023374 Sechium edule HOM05D006393 ORTHO05D008088 1.8e-109 399.8 279 69.9
CAN.G1665.6 Capsicum annuum HOM05D006393 ORTHO05D008088 2.4e-109 399.4 279 71.7
Migut.C00826 Erythranthe guttata HOM05D006393 ORTHO05D008088 2.4e-109 399.4 280 71.4
Nitab4.5_0002551g0020 Nicotiana tabacum HOM05D006393 ORTHO05D008088 3.1e-109 399.1 279 71.7
HanXRQChr03g0062141 Helianthus annuus HOM05D006393 ORTHO05D008088 4.1e-109 398.7 285 69.8
Aa31LG9G6050 Aethionema arabicum HOM05D006393 ORTHO05D008088 5.3e-109 398.3 282 67.7
DCAR_010438 Daucus carota HOM05D006393 ORTHO05D008088 9.1e-109 397.5 280 72.5
Sp6g24450 Schrenkiella parvula HOM05D006393 ORTHO05D008088 1.2e-108 397.1 282 69.9
ClCG06G010490 Citrullus lanatus HOM05D006393 ORTHO05D008088 1.5e-108 396.7 280 70.7
Solyc10g079970.2 Solanum lycopersicum HOM05D006393 ORTHO05D008088 2.0e-108 396.4 279 70.6
AL6G31460 Arabidopsis lyrata HOM05D006393 ORTHO05D008088 2.6e-108 396.0 282 70.2
BcaC04g19399 Brassica carinata HOM05D006393 ORTHO05D008088 5.9e-108 394.8 281 70.5
C09p56120 Brassica napus HOM05D006393 ORTHO05D008088 5.9e-108 394.8 281 70.5
BolC9t58479H Brassica oleracea HOM05D006393 ORTHO05D008088 5.9e-108 394.8 281 70.5
PGSC0003DMG401029823 Solanum tuberosum HOM05D006393 ORTHO05D008088 5.9e-108 394.8 279 71.0
BcaB08g36553 Brassica carinata HOM05D006393 ORTHO05D008088 1.7e-107 393.3 281 69.4
Carub.0006s1830 Capsella rubella HOM05D006393 ORTHO05D008088 1.7e-107 393.3 282 69.1
AUR62033415 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.7e-107 393.3 280 69.3
A10p19800 Brassica napus HOM05D006393 ORTHO05D008088 2.9e-107 392.5 281 69.8
BraA10t44056Z Brassica rapa HOM05D006393 ORTHO05D008088 3.8e-107 392.1 281 69.4
Thhalv10014278m.g Eutrema salsugineum HOM05D006393 ORTHO05D008088 5.0e-107 391.7 282 69.1
Sabra18G0063700 Salix brachista HOM05D006393 ORTHO05D008088 1.1e-106 390.6 279 72.0
SGA_v2.0_scaffold92G28235 Striga asiatica HOM05D006393 ORTHO05D008088 1.9e-106 389.8 280 71.4
EL10Ac8g18557 Beta vulgaris HOM05D006393 ORTHO05D008088 1.8e-104 383.3 280 70.0
MSTRG.1197 Avicennia marina HOM05D006393 ORTHO05D008088 2.3e-104 382.9 279 68.5
FAN23G0113 Fragaria x ananassa HOM05D006393 ORTHO05D008088 5.2e-104 381.7 280 70.7
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 4.4e-103 378.6 264 70.8
Eucgr.C04142 Eucalyptus grandis HOM05D006393 ORTHO05D008088 4.4e-103 378.6 246 76.4
CDE06G0973 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 2.2e-102 376.3 281 67.6
Lsat_1_v5_gn_7_42880 Lactuca sativa HOM05D006393 ORTHO05D008088 2.8e-102 375.9 282 68.1
MBI04_g35350_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 2.8e-102 375.9 249 74.7
THA.LOC104815111 Tarenaya hassleriana HOM05D006393 ORTHO05D008088 1.4e-101 373.6 283 66.1
unitig_37.g13035 Utricularia gibba HOM05D006393 ORTHO05D008088 1.4e-101 373.6 280 67.1
Lj7A639G46 Lonicera japonica HOM05D006393 ORTHO05D008088 9.1e-101 370.9 313 62.9
MBI01_g13571_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 4.5e-100 368.6 281 68.7
Nitab4.5_0010615g0010 Nicotiana tabacum HOM05D006393 ORTHO05D008088 5.0e-99 365.2 249 73.1
Cc06_g09230 Coffea canephora HOM05D006393 ORTHO05D008088 9.4e-98 360.9 236 77.5
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 8.0e-97 357.8 284 62.7
Zm00001eb122440 Zea mays HOM05D006393 ORTHO05D008088 8.8e-96 354.4 271 66.8
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 2.0e-95 353.2 284 62.0
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 3.7e-94 349.0 282 62.4
Ah.14g081310 Amaranthus hybridus HOM05D006393 ORTHO05D008088 6.3e-94 348.2 344 56.4
HPP92_008697 Vanilla planifolia HOM05D006393 ORTHO05D008088 6.3e-94 348.2 279 62.7
Oeu046267.2 Olea europaea HOM05D006393 ORTHO05D008088 5.4e-93 345.1 418 48.6
Peaxi162Scf00223g01425 Petunia axillaris HOM05D006393 ORTHO05D008088 5.4e-93 345.1 292 64.0
HPP92_009792 Vanilla planifolia HOM05D006393 ORTHO05D008088 1.0e-91 340.9 279 61.3
Os01g0178200 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 8.5e-91 337.8 318 57.2
Sc07g0007380 Simmondsia chinensis HOM05D006393 ORTHO05D008088 3.2e-90 335.9 236 70.8
ATR0083G026 Amborella trichopoda HOM05D006393 ORTHO05D008088 3.0e-88 329.3 282 61.7
ECA240G0151 Erigeron canadensis HOM05D006393 ORTHO05D008088 2.6e-87 326.2 221 71.9
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 2.5e-82 309.7 196 77.0
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 6.8e-80 301.6 280 53.6
SalBow7G4467 Salvia bowleyana HOM05D006393 ORTHO05D008088 6.8e-80 301.6 280 57.9
CARHR192920 Cardamine hirsuta HOM05D006393 ORTHO05D008088 8.9e-80 301.2 200 73.5
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 1.7e-78 297.0 282 54.6
Pp3c12_24880 Physcomitrium patens HOM05D006393 ORTHO05D008088 2.4e-77 293.1 280 52.5
Peaxi162Scf00223g01424 Petunia axillaris HOM05D006393 ORTHO05D008088 3.2e-69 266.2 237 62.0
Oeu027539.2 Olea europaea HOM05D006393 ORTHO05D008088 3.0e-67 259.6 290 52.8
TAR636G2166 Trochodendron aralioides HOM05D006393 ORTHO05D008088 1.2e-57 227.6 142 77.5
PRCOL_00002470 Prasinoderma coloniale HOM05D006393 ORTHO05D008088 1.5e-50 204.1 279 43.7
CDE07G1479 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 4.3e-50 202.6 156 64.7
Cre17.g726350 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 1.2e-47 194.5 323 40.2
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 9.9e-47 191.4 180 54.4
Psat6g218400 Pisum sativum HOM05D006393 ORTHO05D008088 3.6e-41 172.9 116 78.4
Glyma.05G012000 Glycine max HOM05D006393 ORTHO05D008088 2.9e-38 163.3 118 77.1
Cre02.g118200 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 4.2e-37 159.5 327 36.7
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 5.4e-37 159.1 180 51.1
MCO12G460 Micromonas commoda HOM05D006393 ORTHO05D008088 8.7e-35 151.8 179 46.9
Eucgr.L03082 Eucalyptus grandis HOM05D006393 ORTHO05D008088 1.2e-31 141.4 125 60.0
Psat5g214680 Pisum sativum HOM05D006393 ORTHO05D008088 2.0e-31 140.6 95 73.7
SEGI_10855 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 3.3e-26 123.2 183 42.6
Zm00001eb342450 Zea mays HOM05D006393 ORTHO05D008088 2.1e-25 120.6 167 43.1
Eucgr.E03680 Eucalyptus grandis HOM05D006393 ORTHO05D008088 1.6e-17 94.4 88 56.8
SEGI_30446 Sequoiadendron giganteum HOM05D006393 ORTHO05D000979 1.8e-08 64.3 56 57.1
SEGI_14370 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 2.0e-07 60.8 56 53.6
vmacro16552 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 4.5e-07 59.7 40 65.0


User provided reference genes

Program Settings