Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3A06QA Arachis hypogaea HOM05D000548 ORTHO05D038828 5.0e-71 271.2 154 100.0
arahy.Tifrunner.gnm1.ann1.FWU2WP Arachis hypogaea HOM05D000548 ORTHO05D038828 7.5e-67 257.3 154 96.1
arahy.Tifrunner.gnm1.ann1.JFG0L8 Arachis hypogaea HOM05D000548 ORTHO05D001552 9.0e-20 100.9 89 61.8
arahy.Tifrunner.gnm1.ann1.T3N7AF Arachis hypogaea HOM05D000548 ORTHO05D001552 9.0e-20 100.9 89 61.8
Lalb_Chr22g0353151 Lupinus albus HOM05D000548 ORTHO05D001552 4.2e-17 92.0 89 56.2
arahy.Tifrunner.gnm1.ann1.40B6EU Arachis hypogaea HOM05D000548 ORTHO05D001552 7.1e-17 91.3 89 56.2
arahy.Tifrunner.gnm1.ann1.FYT1UN Arachis hypogaea HOM05D000548 ORTHO05D001552 7.1e-17 91.3 89 56.2
Medtr8g104410 Medicago truncatula HOM05D000548 ORTHO05D001552 6.0e-16 88.2 85 55.3
Phvul.002G317800 Phaseolus vulgaris HOM05D000548 ORTHO05D001552 7.9e-16 87.8 89 55.1
TPR.G32705 Trifolium pratense HOM05D000548 ORTHO05D001552 1.0e-15 87.4 85 55.3
Ca_17313_v3 Cicer arietinum L. HOM05D000548 ORTHO05D001552 1.3e-15 87.0 89 52.8
Psat7g010880 Pisum sativum HOM05D000548 ORTHO05D001552 1.3e-15 87.0 85 55.3
Cpa.g.sc3.487 Carica papaya HOM05D000548 ORTHO05D001552 1.7e-15 86.7 85 57.6
Lj4g0027138 Lotus japonicus HOM05D000548 ORTHO05D001552 3.0e-15 85.9 89 53.9
Lalb_Chr05g0222381 Lupinus albus HOM05D000548 ORTHO05D001552 3.0e-15 85.9 89 55.1
VMungo0251G1368 Vigna mungo HOM05D000548 ORTHO05D001552 3.0e-15 85.9 89 53.9
TWI15G0474 Tripterygium wilfordii HOM05D000548 ORTHO05D001552 6.6e-15 84.7 85 54.1
TWI60G0259 Tripterygium wilfordii HOM05D000548 ORTHO05D001552 8.7e-15 84.3 85 54.1
Glyma.05G237500 Glycine max HOM05D000548 ORTHO05D001552 1.5e-14 83.6 89 53.9
Glyma.08G044700 Glycine max HOM05D000548 ORTHO05D001552 2.5e-14 82.8 89 52.8
Psat1g036240 Pisum sativum HOM05D000548 ORTHO05D001552 4.3e-14 82.0 89 52.8
Phvul.004G156022 Phaseolus vulgaris HOM05D000548 ORTHO05D001552 5.6e-14 81.6 89 51.7
Thecc.03G037500 Theobroma cacao HOM05D000548 ORTHO05D001552 5.6e-14 81.6 89 50.6
Glyma.07G093700 Glycine max HOM05D000548 ORTHO05D001552 7.3e-14 81.3 89 51.7
A05p31360 Brassica napus HOM05D000548 ORTHO05D001552 9.6e-14 80.9 85 51.8
C05p47660 Brassica napus HOM05D000548 ORTHO05D001552 9.6e-14 80.9 85 51.8
BolC5t33474H Brassica oleracea HOM05D000548 ORTHO05D001552 9.6e-14 80.9 85 51.8
BraA05t21974Z Brassica rapa HOM05D000548 ORTHO05D001552 9.6e-14 80.9 85 51.8
Gohir.D11G004400 Gossypium hirsutum HOM05D000548 ORTHO05D001552 9.6e-14 80.9 85 51.8
Lj2g0002834 Lotus japonicus HOM05D000548 ORTHO05D001552 9.6e-14 80.9 89 50.6
Aa31LG8G5150 Aethionema arabicum HOM05D000548 ORTHO05D001552 1.3e-13 80.5 85 51.8
CiPaw.15G132100 Carya illinoinensis HOM05D000548 ORTHO05D001552 1.3e-13 80.5 89 50.6
VMungo0464G0419 Vigna mungo HOM05D000548 ORTHO05D001552 1.3e-13 80.5 88 51.1
AL3G31530 Arabidopsis lyrata HOM05D000548 ORTHO05D001552 1.6e-13 80.1 85 51.8
AT3G18290 Arabidopsis thaliana HOM05D000548 ORTHO05D001552 1.6e-13 80.1 85 51.8
BcaB04g20777 Brassica carinata HOM05D000548 ORTHO05D001552 1.6e-13 80.1 85 51.8
Carub.0003s1807 Capsella rubella HOM05D000548 ORTHO05D001552 1.6e-13 80.1 85 51.8
Thhalv10019915m.g Eutrema salsugineum HOM05D000548 ORTHO05D001552 1.6e-13 80.1 85 51.8
Gorai.007G005400 Gossypium raimondii HOM05D000548 ORTHO05D001552 1.6e-13 80.1 85 51.8
TPR.G15369 Trifolium pratense HOM05D000548 ORTHO05D001552 1.6e-13 80.1 66 60.6
ClCG06G014680 Citrullus lanatus HOM05D000548 ORTHO05D001552 2.1e-13 79.7 85 50.6
CsaV3_1G003960 Cucumis sativus L. HOM05D000548 ORTHO05D001552 2.1e-13 79.7 85 50.6
Dinv15696 Davidia involucrata HOM05D000548 ORTHO05D001552 2.1e-13 79.7 89 49.4
Duzib205G0874 Durio zibethinus HOM05D000548 ORTHO05D001552 2.1e-13 79.7 85 50.6
Gohir.A11G005100 Gossypium hirsutum HOM05D000548 ORTHO05D001552 2.1e-13 79.7 85 51.8
CANSAT80G1741 Cannabis sativa HOM05D000548 ORTHO05D001552 2.8e-13 79.3 85 50.6
CARHR093650 Cardamine hirsuta HOM05D000548 ORTHO05D001552 2.8e-13 79.3 85 51.8
MELO3C017320.2 Cucumis melo HOM05D000548 ORTHO05D001552 2.8e-13 79.3 85 50.6
Duzib068G0486 Durio zibethinus HOM05D000548 ORTHO05D001552 2.8e-13 79.3 89 49.4
BcaC09g48790 Brassica carinata HOM05D000548 ORTHO05D001552 3.6e-13 79.0 85 50.6
A01p36030 Brassica napus HOM05D000548 ORTHO05D001552 3.6e-13 79.0 85 50.6
C01p45880 Brassica napus HOM05D000548 ORTHO05D001552 3.6e-13 79.0 85 50.6
BolC1t04550H Brassica oleracea HOM05D000548 ORTHO05D001552 3.6e-13 79.0 85 50.6
BraA01t03682Z Brassica rapa HOM05D000548 ORTHO05D001552 3.6e-13 79.0 85 50.6
Sed0007904 Sechium edule HOM05D000548 ORTHO05D001552 4.8e-13 78.6 85 50.6
Potri.012G055100 Populus trichocarpa HOM05D000548 ORTHO05D001552 6.2e-13 78.2 89 48.3
Sabra12G0038800 Salix brachista HOM05D000548 ORTHO05D001552 6.2e-13 78.2 89 48.3
vmacro17704 Vaccinium macrocarpon HOM05D000548 ORTHO05D001552 6.2e-13 78.2 89 48.3
QL10p025720 Quercus lobata HOM05D000548 ORTHO05D001552 8.1e-13 77.8 88 51.1
THA.LOC104809834 Tarenaya hassleriana HOM05D000548 ORTHO05D001552 8.1e-13 77.8 85 50.6
Haze_18701 Corylus avellana HOM05D000548 ORTHO05D001552 1.1e-12 77.4 66 59.1
Rhsim08G0131900 Rhododendron simsii HOM05D000548 ORTHO05D001552 1.1e-12 77.4 89 47.2
Sp3g16420 Schrenkiella parvula HOM05D000548 ORTHO05D001552 1.1e-12 77.4 85 51.8
vmacro01391 Vaccinium macrocarpon HOM05D000548 ORTHO05D001552 1.1e-12 77.4 85 51.8
Atru.chr9.870 Acer truncatum HOM05D000548 ORTHO05D001552 1.8e-12 76.6 89 48.3
Actinidia02462 Actinidia chinensis HOM05D000548 ORTHO05D001552 1.8e-12 76.6 89 47.2
CSS0017130 Camellia sinensis var. sinensis HOM05D000548 ORTHO05D001552 1.8e-12 76.6 85 51.8
CSS0042728 Camellia sinensis var. sinensis HOM05D000548 ORTHO05D001552 1.8e-12 76.6 85 51.8
Medtr6g083900 Medicago truncatula HOM05D000548 ORTHO05D001552 1.8e-12 76.6 89 50.6
Actinidia02673 Actinidia chinensis HOM05D000548 ORTHO05D011935 2.4e-12 76.3 89 47.2
Glyma.09G182600 Glycine max HOM05D000548 ORTHO05D001552 2.4e-12 76.3 89 49.4
COL.COLO4_04904 Corchorus olitorius HOM05D000548 ORTHO05D001552 3.1e-12 75.9 89 48.3
Nitab4.5_0001616g0110 Nicotiana tabacum HOM05D000548 ORTHO05D001552 3.1e-12 75.9 85 50.6
Nitab4.5_0005528g0100 Nicotiana tabacum HOM05D000548 ORTHO05D001552 3.1e-12 75.9 85 50.6
BcaC05g28617 Brassica carinata HOM05D000548 ORTHO05D001552 4.0e-12 75.5 79 50.6
CSS0050289 Camellia sinensis var. sinensis HOM05D000548 ORTHO05D001552 4.0e-12 75.5 89 46.1
DCAR_007254 Daucus carota HOM05D000548 ORTHO05D001552 4.0e-12 75.5 85 50.6
Migut.E00361 Erythranthe guttata HOM05D000548 ORTHO05D001552 4.0e-12 75.5 85 50.6
MBI16_g13192_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D001552 4.0e-12 75.5 85 50.6
MBI16_g28237_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D011935 4.0e-12 75.5 85 50.6
Hma1.2p1_0653F.1_g196160 Hydrangea macrophylla HOM05D000548 ORTHO05D001552 5.3e-12 75.1 89 47.2
Migut.L01044 Erythranthe guttata HOM05D000548 ORTHO05D001552 6.9e-12 74.7 85 50.6
Nn1g00632 Nelumbo nucifera HOM05D000548 ORTHO05D001552 6.9e-12 74.7 85 49.4
Prupe.5G223100 Prunus persica HOM05D000548 ORTHO05D001552 6.9e-12 74.7 89 50.6
Eucgr.B00741 Eucalyptus grandis HOM05D000548 ORTHO05D001552 9.0e-12 74.3 85 48.2
MD06G1217900 Malus domestica HOM05D000548 ORTHO05D001552 9.0e-12 74.3 89 49.4
Sopen05g004870 Solanum pennellii HOM05D000548 ORTHO05D001552 9.0e-12 74.3 85 49.4
Rhsim12G0085700 Rhododendron simsii HOM05D000548 ORTHO05D001552 1.2e-11 73.9 85 49.4
Lj6A754T51 Lonicera japonica HOM05D000548 ORTHO05D001552 1.5e-11 73.6 85 49.4
Aqoxy3G00242 Aquilegia oxysepala HOM05D000548 ORTHO05D001552 2.0e-11 73.2 85 48.2
Dinv31615 Davidia involucrata HOM05D000548 ORTHO05D001552 2.0e-11 73.2 85 47.1
HanXRQChr11g0341021 Helianthus annuus HOM05D000548 ORTHO05D001552 2.6e-11 72.8 85 48.2
MD14G1228100 Malus domestica HOM05D000548 ORTHO05D001552 2.6e-11 72.8 89 49.4
PSO063G0045 Papaver somniferum HOM05D000548 ORTHO05D001552 2.6e-11 72.8 89 47.2
PSO782G0850 Papaver somniferum HOM05D000548 ORTHO05D001552 2.6e-11 72.8 89 47.2
TAR622G0465 Trochodendron aralioides HOM05D000548 ORTHO05D001552 2.6e-11 72.8 85 50.6
FvH4_5g11860 Fragaria vesca HOM05D000548 ORTHO05D001552 4.5e-11 72.0 89 48.3
FAN18G2292 Fragaria x ananassa HOM05D000548 ORTHO05D001552 4.5e-11 72.0 89 48.3
FAN08G1473 Fragaria x ananassa HOM05D000548 ORTHO05D001552 5.8e-11 71.6 89 48.3
FAN13G3165 Fragaria x ananassa HOM05D000548 ORTHO05D001552 5.8e-11 71.6 89 48.3
Lsat_1_v5_gn_8_40260 Lactuca sativa HOM05D000548 ORTHO05D001552 5.8e-11 71.6 85 47.1
RcHm_v2.0_Chr7g0185731 Rosa chinensis HOM05D000548 ORTHO05D001552 5.8e-11 71.6 89 48.3
Actinidia13654 Actinidia chinensis HOM05D000548 ORTHO05D001552 7.6e-11 71.2 85 48.2
MSTRG.856 Avicennia marina HOM05D000548 ORTHO05D001552 7.6e-11 71.2 66 51.5
Ciclev10018545m.g Citrus clementina HOM05D000548 ORTHO05D001552 9.9e-11 70.9 66 56.1
MBI09_g07742_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D001552 9.9e-11 70.9 85 48.2
Oeu057740.1 Olea europaea HOM05D000548 ORTHO05D001552 9.9e-11 70.9 85 45.9
PGR083G1736 Punica granatum HOM05D000548 ORTHO05D001552 9.9e-11 70.9 85 48.2
CAN.G610.58 Capsicum annuum HOM05D000548 ORTHO05D001552 1.3e-10 70.5 85 48.2
Cpa.g.sc65.51 Carica papaya HOM05D000548 ORTHO05D001552 1.3e-10 70.5 85 48.2
Cc11_g09850 Coffea canephora HOM05D000548 ORTHO05D001552 1.3e-10 70.5 93 46.2
ECA233G4080 Erigeron canadensis HOM05D000548 ORTHO05D001552 1.7e-10 70.1 85 45.9
GSVIVG01008317001 Vitis vinifera HOM05D000548 ORTHO05D001552 1.7e-10 70.1 66 50.0
GSVIVG01011863001 Vitis vinifera HOM05D000548 ORTHO05D001552 2.2e-10 69.7 66 53.0
Oeu034218.1 Olea europaea HOM05D000548 ORTHO05D001552 2.9e-10 69.3 85 47.1
Peaxi162Scf00683g00026 Petunia axillaris HOM05D000548 ORTHO05D001552 2.9e-10 69.3 66 53.0
Cc04_g07020 Coffea canephora HOM05D000548 ORTHO05D001552 3.8e-10 68.9 66 51.5
HanXRQChr08g0213501 Helianthus annuus HOM05D000548 ORTHO05D001552 8.4e-10 67.8 85 45.9
Manes.06G065800 Manihot esculenta HOM05D000548 ORTHO05D001552 8.4e-10 67.8 85 47.1
Nitab4.5_0003433g0060 Nicotiana tabacum HOM05D000548 ORTHO05D001552 8.4e-10 67.8 66 50.0
Duzib248G0424 Durio zibethinus HOM05D000548 ORTHO05D001552 1.1e-09 67.4 85 48.2
Lj5C150T18 Lonicera japonica HOM05D000548 ORTHO05D001552 1.1e-09 67.4 66 51.5
Nitab4.5_0002906g0130 Nicotiana tabacum HOM05D000548 ORTHO05D001552 1.4e-09 67.0 66 51.5
Os01g0689451 Oryza sativa ssp. japonica HOM05D000548 ORTHO05D001552 1.4e-09 67.0 85 44.7
Thecc.02G224900 Theobroma cacao HOM05D000548 ORTHO05D001552 1.4e-09 67.0 85 48.2
Nn6g33678 Nelumbo nucifera HOM05D000548 ORTHO05D001552 1.9e-09 66.6 66 54.5
MD16G1039900 Malus domestica HOM05D000548 ORTHO05D001552 2.4e-09 66.2 85 45.9
SGA_v2.0_scaffold38G14966 Striga asiatica HOM05D000548 ORTHO05D001552 2.4e-09 66.2 85 47.1
Peaxi162Scf00753g00119 Petunia axillaris HOM05D000548 ORTHO05D001552 3.2e-09 65.9 93 45.2
HPP92_006398 Vanilla planifolia HOM05D000548 ORTHO05D001552 3.2e-09 65.9 85 45.9
Zm00001eb156300 Zea mays HOM05D000548 ORTHO05D001552 3.2e-09 65.9 85 43.5
CAN.G1425.22 Capsicum annuum HOM05D000548 ORTHO05D001552 4.2e-09 65.5 85 44.7
DCAR_023640 Daucus carota HOM05D000548 ORTHO05D001552 4.2e-09 65.5 85 45.9
Zm00001eb360580 Zea mays HOM05D000548 ORTHO05D001552 4.2e-09 65.5 85 43.5
PGR119G0673 Punica granatum HOM05D000548 ORTHO05D001552 5.5e-09 65.1 85 45.9
HPP92_011525 Vanilla planifolia HOM05D000548 ORTHO05D001552 5.5e-09 65.1 89 43.8
Hund20766 Selenicereus undatus HOM05D000548 ORTHO05D001552 2.1e-08 63.2 66 48.5
Sc11g0003540 Simmondsia chinensis HOM05D000548 ORTHO05D001552 2.1e-08 63.2 89 43.8
TAR629G2613 Trochodendron aralioides HOM05D000548 ORTHO05D001552 2.7e-08 62.8 85 44.7
Atru.chr11.164 Acer truncatum HOM05D000548 ORTHO05D001552 3.5e-08 62.4 85 44.7
MSTRG.2224 Avicennia marina HOM05D000548 ORTHO05D001552 3.5e-08 62.4 85 42.4
MBI01_g24554_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D011935 3.5e-08 62.4 55 54.5
Potri.010G122200 Populus trichocarpa HOM05D000548 ORTHO05D001552 3.5e-08 62.4 89 42.7
Sabra10G0092300 Salix brachista HOM05D000548 ORTHO05D001552 3.5e-08 62.4 89 42.7
Ciclev10014065m.g Citrus clementina HOM05D000548 ORTHO05D001552 4.6e-08 62.0 85 44.7
MBI08_g38848_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D011935 4.6e-08 62.0 82 43.9
Potri.008G123300 Populus trichocarpa HOM05D000548 ORTHO05D001552 6.0e-08 61.6 89 42.7
Gohir.A04G097800 Gossypium hirsutum HOM05D000548 ORTHO05D001552 7.9e-08 61.2 85 45.9
Solyc03g119300.4 Solanum lycopersicum HOM05D000548 ORTHO05D001552 1.0e-07 60.8 66 50.0
Sopen03g038180 Solanum pennellii HOM05D000548 ORTHO05D001552 1.0e-07 60.8 66 50.0
MSTRG.13547 Avicennia marina HOM05D000548 ORTHO05D001552 1.3e-07 60.5 85 43.5
MBI03_g07324_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D011935 3.0e-07 59.3 59 52.5
Prupe.1G314300 Prunus persica HOM05D000548 ORTHO05D001552 3.0e-07 59.3 85 42.4
CANSAT01G1036 Cannabis sativa HOM05D000548 ORTHO05D001552 5.1e-07 58.5 67 53.7
Duzib251G0415 Durio zibethinus HOM05D000548 ORTHO05D001552 5.1e-07 58.5 89 42.7
FAN07G2112 Fragaria x ananassa HOM05D000548 ORTHO05D001552 5.1e-07 58.5 66 43.9
Prupe.2G085600 Prunus persica HOM05D000548 ORTHO05D001552 6.7e-07 58.2 48 54.2
Sabra08G0093600 Salix brachista HOM05D000548 ORTHO05D001552 8.7e-07 57.8 89 40.4
ATR1125G088 Amborella trichopoda HOM05D000548 ORTHO05D001552 1.1e-06 57.4 47 61.7
FvH4_4g26990 Fragaria vesca HOM05D000548 ORTHO05D001552 1.1e-06 57.4 66 43.9
FAN12G2934 Fragaria x ananassa HOM05D000548 ORTHO05D001552 1.1e-06 57.4 66 43.9
FAN12G3869 Fragaria x ananassa HOM05D000548 ORTHO05D001552 1.1e-06 57.4 66 43.9
FAN17G1200 Fragaria x ananassa HOM05D000548 ORTHO05D001552 1.1e-06 57.4 66 43.9
FAN22G1194 Fragaria x ananassa HOM05D000548 ORTHO05D001552 1.1e-06 57.4 66 43.9
Gorai.012G121900 Gossypium raimondii HOM05D000548 ORTHO05D001552 1.1e-06 57.4 85 42.4
MBI14_g39707_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D011935 1.1e-06 57.4 50 58.0
Sc04g0006160 Simmondsia chinensis HOM05D000548 ORTHO05D001552 1.1e-06 57.4 66 45.5
Ah.02g127680 Amaranthus hybridus HOM05D000548 ORTHO05D001552 1.5e-06 57.0 66 45.5
Gohir.D04G137500 Gossypium hirsutum HOM05D000548 ORTHO05D001552 1.9e-06 56.6 83 43.4
QL01p040509 Quercus lobata HOM05D000548 ORTHO05D001552 2.5e-06 56.2 66 43.9
RcHm_v2.0_Chr4g0434791 Rosa chinensis HOM05D000548 ORTHO05D001552 2.5e-06 56.2 66 42.4
CiPaw.06G018000 Carya illinoinensis HOM05D000548 ORTHO05D001552 4.3e-06 55.5 112 37.5
THA.LOC104816755 Tarenaya hassleriana HOM05D000548 ORTHO05D001552 4.3e-06 55.5 66 42.4
MBI06_g46049_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D011935 7.4e-06 54.7 66 43.9
MBI08_g04251_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D011935 7.4e-06 54.7 44 59.1
MBI09_g20571_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D011935 7.4e-06 54.7 66 43.9
MBI12_g47576_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D011935 7.4e-06 54.7 66 43.9
MBI15_g22200_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D011935 7.4e-06 54.7 66 43.9
MBI15_g46034_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D011935 7.4e-06 54.7 66 43.9
MBI19_g46602_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D011935 7.4e-06 54.7 66 43.9
AUR62002840 Chenopodium quinoa HOM05D000548 ORTHO05D001552 9.6e-06 54.3 66 43.9
AUR62037305 Chenopodium quinoa HOM05D000548 ORTHO05D001552 9.6e-06 54.3 66 43.9
MBI08_g30375_MAGBIO Magnolia biondii HOM05D000548 ORTHO05D011935 9.6e-06 54.3 66 43.9


User provided reference genes

Program Settings