Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3896ZX Arachis hypogaea HOM05D005663 ORTHO05D007258 1.1e-116 423.3 212 100.0
arahy.Tifrunner.gnm1.ann1.ILAW0V Arachis hypogaea HOM05D005663 ORTHO05D007258 2.1e-83 312.8 158 97.5
arahy.Tifrunner.gnm1.ann1.6JE7GZ Arachis hypogaea HOM05D005663 ORTHO05D007258 9.9e-78 293.9 158 90.5
arahy.Tifrunner.gnm1.ann1.67XQRG Arachis hypogaea HOM05D005663 ORTHO05D007258 8.4e-77 290.8 158 89.9
arahy.Tifrunner.gnm1.ann1.4DFA8P Arachis hypogaea HOM05D005663 ORTHO05D007258 2.4e-71 272.7 165 83.6
arahy.Tifrunner.gnm1.ann1.B1HTRM Arachis hypogaea HOM05D005663 ORTHO05D007258 2.0e-70 269.6 149 90.6
Glyma.08G146300 Glycine max HOM05D005663 ORTHO05D007258 2.0e-62 243.0 158 73.4
arahy.Tifrunner.gnm1.ann1.YJV2YZ Arachis hypogaea HOM05D005663 ORTHO05D007258 2.6e-62 242.7 150 83.3
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 2.6e-62 242.7 158 73.4
Phvul.002G269000 Phaseolus vulgaris HOM05D005663 ORTHO05D007258 3.4e-62 242.3 167 71.3
Lalb_Chr12g0203331 Lupinus albus HOM05D005663 ORTHO05D007258 5.0e-61 238.4 168 69.6
Glyma.05G188200 Glycine max HOM05D005663 ORTHO05D007258 5.5e-60 235.0 158 72.2
VMungo0251G2076 Vigna mungo HOM05D005663 ORTHO05D007258 7.2e-60 234.6 158 74.7
Lj4g0014342 Lotus japonicus HOM05D005663 ORTHO05D007258 3.0e-58 229.2 156 72.4
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 3.3e-57 225.7 152 69.7
Psat7g048760 Pisum sativum HOM05D005663 ORTHO05D007258 4.3e-57 225.3 169 66.9
arahy.Tifrunner.gnm1.ann1.A2IFSH Arachis hypogaea HOM05D005663 ORTHO05D007258 9.0e-55 217.6 152 74.3
arahy.Tifrunner.gnm1.ann1.I27Z20 Arachis hypogaea HOM05D005663 ORTHO05D007258 9.0e-55 217.6 152 74.3
arahy.Tifrunner.gnm1.ann1.E1FWBU Arachis hypogaea HOM05D005663 ORTHO05D007258 1.5e-54 216.9 151 74.2
arahy.Tifrunner.gnm1.ann1.UQF3WB Arachis hypogaea HOM05D005663 ORTHO05D007258 7.7e-54 214.5 150 74.0
Ca_17664_v3 Cicer arietinum L. HOM05D005663 ORTHO05D007258 1.1e-52 210.7 145 71.7
arahy.Tifrunner.gnm1.ann1.4UVV3S Arachis hypogaea HOM05D005663 ORTHO05D007258 1.6e-43 180.3 117 76.9
RcHm_v2.0_Chr2g0119121 Rosa chinensis HOM05D005663 ORTHO05D007258 4.7e-43 178.7 151 60.9
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 1.4e-42 177.2 176 54.5
FvH4_1g23570 Fragaria vesca HOM05D005663 ORTHO05D007258 3.0e-42 176.0 142 60.6
FAN19G1272 Fragaria x ananassa HOM05D005663 ORTHO05D007258 3.0e-42 176.0 142 60.6
arahy.Tifrunner.gnm1.ann1.9IQI21 Arachis hypogaea HOM05D005663 ORTHO05D007258 3.9e-42 175.6 102 83.3
FAN26G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 8.8e-42 174.5 142 59.9
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 1.7e-40 170.2 153 58.2
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 2.8e-40 169.5 147 59.2
CANSAT01G3211 Cannabis sativa HOM05D005663 ORTHO05D007258 4.1e-39 165.6 158 55.7
Rhsim08G0003400 Rhododendron simsii HOM05D005663 ORTHO05D007258 7.0e-39 164.9 123 65.9
TAR625G0848 Trochodendron aralioides HOM05D005663 ORTHO05D007258 1.2e-38 164.1 143 60.1
CiPaw.03G123800 Carya illinoinensis HOM05D005663 ORTHO05D007258 1.6e-38 163.7 116 69.0
Dinv09933 Davidia involucrata HOM05D005663 ORTHO05D007258 1.6e-38 163.7 163 55.2
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 5.9e-38 161.8 122 67.2
Hma1.2p1_0006F.1_g004880 Hydrangea macrophylla HOM05D005663 ORTHO05D007258 1.3e-37 160.6 164 53.7
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 2.9e-37 159.5 129 63.6
Cpa.g.c33395.2 Carica papaya HOM05D005663 ORTHO05D007258 5.0e-37 158.7 127 65.4
Duzib264G0763 Durio zibethinus HOM05D005663 ORTHO05D007258 1.5e-36 157.1 123 64.2
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 2.5e-36 156.4 126 65.1
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 7.2e-36 154.8 150 54.7
TAR381G0497 Trochodendron aralioides HOM05D005663 ORTHO05D007258 7.2e-36 154.8 167 51.5
COL.COLO4_22418 Corchorus olitorius HOM05D005663 ORTHO05D007258 9.4e-36 154.5 120 64.2
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 1.2e-35 154.1 159 52.8
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 1.6e-35 153.7 146 56.2
PGR119G0285 Punica granatum HOM05D005663 ORTHO05D007258 2.1e-35 153.3 125 63.2
A03p04280 Brassica napus HOM05D005663 ORTHO05D007258 2.7e-35 152.9 154 52.6
Nn5g28726 Nelumbo nucifera HOM05D005663 ORTHO05D007258 3.6e-35 152.5 176 45.5
Thhalv10014407m.g Eutrema salsugineum HOM05D005663 ORTHO05D007258 4.7e-35 152.1 134 59.7
BraA03t09772Z Brassica rapa HOM05D005663 ORTHO05D007258 6.1e-35 151.8 136 55.9
Sp6g33590 Schrenkiella parvula HOM05D005663 ORTHO05D007258 8.0e-35 151.4 134 57.5
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 4.0e-34 149.1 124 60.5
Carub.0006s0824 Capsella rubella HOM05D005663 ORTHO05D007258 5.2e-34 148.7 141 55.3
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 8.8e-34 147.9 144 52.8
AL6G20230 Arabidopsis lyrata HOM05D005663 ORTHO05D007258 1.1e-33 147.5 140 54.3
Aa31LG3G17290 Aethionema arabicum HOM05D005663 ORTHO05D007258 1.5e-33 147.1 132 53.8
arahy.Tifrunner.gnm1.ann1.4L9II4 Arachis hypogaea HOM05D005663 ORTHO05D007258 1.5e-33 147.1 79 89.9
Gohir.D06G155500 Gossypium hirsutum HOM05D005663 ORTHO05D007258 1.5e-33 147.1 124 60.5
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 1.5e-33 147.1 122 63.1
Gorai.010G181700 Gossypium raimondii HOM05D005663 ORTHO05D007258 1.5e-33 147.1 124 60.5
Cc07_g17370 Coffea canephora HOM05D005663 ORTHO05D007258 2.0e-33 146.7 149 49.0
BolC3t13007H Brassica oleracea HOM05D005663 ORTHO05D007258 2.6e-33 146.4 138 53.6
MD15G1343200 Malus domestica HOM05D005663 ORTHO05D007258 4.4e-33 145.6 125 60.0
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 4.4e-33 145.6 163 50.3
C03p04720 Brassica napus HOM05D005663 ORTHO05D007258 5.7e-33 145.2 139 53.2
Potri.001G309300 Populus trichocarpa HOM05D005663 ORTHO05D007258 5.7e-33 145.2 126 61.1
AT5G09820 Arabidopsis thaliana HOM05D005663 ORTHO05D007258 1.3e-32 144.1 145 52.4
Peaxi162Scf00025g02122 Petunia axillaris HOM05D005663 ORTHO05D007258 1.3e-32 144.1 155 50.3
Sabra16G0195100 Salix brachista HOM05D005663 ORTHO05D007258 1.7e-32 143.7 126 58.7
Sopen11g001350 Solanum pennellii HOM05D005663 ORTHO05D007258 1.7e-32 143.7 156 48.7
PSO541G2505 Papaver somniferum HOM05D005663 ORTHO05D007258 2.8e-32 142.9 168 45.8
DCAR_027256 Daucus carota HOM05D005663 ORTHO05D007258 3.7e-32 142.5 152 50.7
COL.COLO4_22420 Corchorus olitorius HOM05D005663 ORTHO05D007258 4.8e-32 142.1 145 55.2
CAN.G249.7 Capsicum annuum HOM05D005663 ORTHO05D007258 1.4e-31 140.6 171 44.4
Eucgr.I00244 Eucalyptus grandis HOM05D005663 ORTHO05D007258 1.4e-31 140.6 129 58.1
CARHR203580 Cardamine hirsuta HOM05D005663 ORTHO05D007258 1.8e-31 140.2 135 54.8
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 2.4e-31 139.8 156 47.4
Nitab4.5_0009320g0020 Nicotiana tabacum HOM05D005663 ORTHO05D007258 3.1e-31 139.4 158 48.7
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 5.3e-31 138.7 119 60.5
CDE04G2754 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 5.3e-31 138.7 129 52.7
CDE12G0169 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 5.3e-31 138.7 129 52.7
MBI09_g20114_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 5.3e-31 138.7 147 51.7
Lj4A856T34 Lonicera japonica HOM05D005663 ORTHO05D007258 7.0e-31 138.3 137 52.6
Oeu047646.1 Olea europaea HOM05D005663 ORTHO05D007258 9.1e-31 137.9 124 60.5
TWI75G0275 Tripterygium wilfordii HOM05D005663 ORTHO05D007258 1.2e-30 137.5 119 61.3
Atru.chr4.540 Acer truncatum HOM05D005663 ORTHO05D007258 1.6e-30 137.1 158 50.6
Atru.chr4.1055 Acer truncatum HOM05D005663 ORTHO05D007258 2.0e-30 136.7 171 46.2
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 2.0e-30 136.7 103 59.2
ECA238G2757 Erigeron canadensis HOM05D005663 ORTHO05D007258 2.7e-30 136.3 94 64.9
HanXRQChr15g0490251 Helianthus annuus HOM05D005663 ORTHO05D007258 4.5e-30 135.6 94 64.9
MBI09_g18623_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 4.5e-30 135.6 94 67.0
Atru.chr4.1044 Acer truncatum HOM05D005663 ORTHO05D007258 5.9e-30 135.2 155 46.5
SalBow2G3104 Salvia bowleyana HOM05D005663 ORTHO05D007258 1.0e-29 134.4 93 66.7
Sc03g0004740 Simmondsia chinensis HOM05D005663 ORTHO05D007258 1.0e-29 134.4 104 60.6
THA.LOC104818465 Tarenaya hassleriana HOM05D005663 ORTHO05D007258 1.7e-29 133.7 153 48.4
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 2.2e-29 133.3 94 64.9
unitig_899.g14706 Utricularia gibba HOM05D005663 ORTHO05D007258 6.5e-29 131.7 92 68.5
SGA_v2.0_scaffold137G35114 Striga asiatica HOM05D005663 ORTHO05D007258 1.1e-28 131.0 119 55.5
Os04g0422000 Oryza sativa ssp. japonica HOM05D005663 ORTHO05D007258 3.2e-28 129.4 92 69.6
Duzib147G1259 Durio zibethinus HOM05D005663 ORTHO05D007258 7.2e-28 128.3 91 62.6
Zm00001eb083210 Zea mays HOM05D005663 ORTHO05D007258 1.2e-27 127.5 93 65.6
BcaNung05557 Brassica carinata HOM05D005663 ORTHO05D007258 6.1e-27 125.2 138 50.0
Migut.H01114 Erythranthe guttata HOM05D005663 ORTHO05D007258 6.1e-27 125.2 107 59.8
PGSC0003DMG400003986 Solanum tuberosum HOM05D005663 ORTHO05D007258 6.1e-27 125.2 81 74.1
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 1.4e-26 124.0 97 60.8
Ah.03g146600 Amaranthus hybridus HOM05D005663 ORTHO05D007258 2.3e-26 123.2 86 67.4
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 1.7e-24 117.1 92 60.9
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 3.7e-24 115.9 96 58.3
arahy.Tifrunner.gnm1.ann1.Y74X5L Arachis hypogaea HOM05D005663 ORTHO05D007258 4.1e-23 112.5 63 85.7
SMO358G0575 Selaginella moellendorffii HOM05D005663 ORTHO05D007258 2.7e-22 109.8 82 64.6
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 3.5e-22 109.4 91 60.4
RcHm_v2.0_Chr2g0119061 Rosa chinensis HOM05D005663 ORTHO05D007258 7.7e-22 108.2 67 76.1
Cre03.g188700 Chlamydomonas reinhardtii HOM05D005663 ORTHO05D007258 1.3e-21 107.5 88 58.0
FAN23G0034 Fragaria x ananassa HOM05D005663 ORTHO05D007258 1.3e-21 107.5 101 53.5
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 5.0e-21 105.5 68 73.5
Prupe.6G163100 Prunus persica HOM05D005663 ORTHO05D007258 2.7e-19 99.8 83 61.4
Mapoly0060s0002 Marchantia polymorpha HOM05D005663 ORTHO05D007258 1.5e-17 94.0 80 57.5
EL10Ac6g15254 Beta vulgaris HOM05D005663 ORTHO05D007258 2.0e-17 93.6 137 40.9
arahy.Tifrunner.gnm1.ann1.SHST7E Arachis hypogaea HOM05D005663 ORTHO05D007258 8.3e-16 88.2 110 47.3
Thecc.01G121200 Theobroma cacao HOM05D005663 ORTHO05D007258 2.4e-15 86.7 128 40.6
arahy.Tifrunner.gnm1.ann1.2XR3X5 Arachis hypogaea HOM05D005663 ORTHO05D007258 3.8e-13 79.3 49 79.6
MD01G1001300 Malus domestica HOM05D005663 ORTHO05D007258 1.5e-12 77.4 81 50.6
CSS0003387 Camellia sinensis var. sinensis HOM05D005663 ORTHO05D007258 1.6e-11 73.9 60 60.0
FAN19G2811 Fragaria x ananassa HOM05D005663 ORTHO05D007258 1.4e-10 70.9 60 60.0
CSS0035922 Camellia sinensis var. sinensis HOM05D005663 ORTHO05D007258 1.8e-10 70.5 48 70.8
FvH4_1g28530 Fragaria vesca HOM05D005663 ORTHO05D007258 5.7e-09 65.5 38 76.3
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 1.7e-08 63.9 110 38.2
Cpa.g.c30992.3 Carica papaya HOM05D002234 ORTHO05D002254 4.1e-07 59.3 107 34.6
THA.LOC104812983 Tarenaya hassleriana HOM05D002234 ORTHO05D002254 7.0e-07 58.5 107 34.6
AL7G31390 Arabidopsis lyrata HOM05D002234 ORTHO05D002254 1.6e-06 57.4 128 34.4
Carub.0007s1908 Capsella rubella HOM05D002234 ORTHO05D002254 2.0e-06 57.0 86 39.5
MSTRG.13126 Avicennia marina HOM05D002234 ORTHO05D002254 3.5e-06 56.2 94 35.1
AT4G22240 Arabidopsis thaliana HOM05D002234 ORTHO05D002254 4.6e-06 55.8 86 39.5
Migut.H01594 Erythranthe guttata HOM05D002234 ORTHO05D002254 4.6e-06 55.8 86 36.0
Migut.M01365 Erythranthe guttata HOM05D002234 ORTHO05D002254 4.6e-06 55.8 90 37.8
Phvul.006G145100 Phaseolus vulgaris HOM05D002234 ORTHO05D002254 4.6e-06 55.8 108 33.3
Ca_25189_v3 Cicer arietinum L. HOM05D002234 ORTHO05D002254 7.8e-06 55.1 94 38.3
unitig_744.g24517 Utricularia gibba HOM05D002234 ORTHO05D002254 7.8e-06 55.1 86 34.9


User provided reference genes

Program Settings