Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.4e-147 525.0 272 100.0
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.4e-145 519.6 272 98.5
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.6e-112 409.8 248 84.7
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.1e-108 395.6 221 92.8
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.9e-105 386.3 279 74.9
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.8e-103 379.8 279 74.6
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.5e-102 376.7 243 80.7
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.7e-101 373.2 274 73.7
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 6.3e-101 371.3 280 72.5
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 6.5e-98 361.3 221 84.6
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 2.6e-94 349.4 272 70.2
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 2.4e-92 342.8 273 69.6
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.0e-90 337.4 272 68.0
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.0e-83 313.2 180 86.7
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 3.8e-82 308.9 250 68.8
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.3e-74 283.9 272 61.4
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 2.6e-70 269.6 261 59.0
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 5.4e-68 261.9 267 57.7
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 5.4e-68 261.9 268 58.6
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.7e-66 256.9 264 57.2
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 6.6e-66 255.0 246 60.2
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.3e-65 252.7 269 57.2
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 3.3e-65 252.7 263 56.3
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 4.3e-65 252.3 267 54.7
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 3.6e-64 249.2 244 59.8
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 3.6e-64 249.2 267 54.3
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.3e-63 246.5 265 57.0
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 3.0e-63 246.1 267 53.6
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 6.8e-63 245.0 261 55.2
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.5e-62 243.8 264 53.4
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.5e-62 243.8 264 53.4
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 2.0e-62 243.4 264 54.2
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.4e-62 242.7 264 53.4
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 4.4e-62 242.3 265 53.2
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 4.4e-62 242.3 269 55.4
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 7.8e-59 231.5 267 51.7
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 3.3e-57 226.1 261 54.0
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 1.2e-56 224.2 262 53.8
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 2.1e-56 223.4 265 52.1
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 3.6e-56 222.6 269 52.8
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 6.2e-56 221.9 265 50.9
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 3.4e-54 216.1 268 51.1
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.4e-54 216.1 263 50.2
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.3e-53 214.2 244 51.6
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 2.2e-53 213.4 260 50.4
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 3.7e-53 212.6 265 48.3
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 7.0e-52 208.4 264 51.5
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.3e-50 204.1 277 49.8
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 2.3e-50 203.4 273 49.8
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 1.9e-49 200.3 271 48.3
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.2e-48 197.6 267 48.3
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.2e-46 191.0 255 46.7
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 4.4e-46 189.1 255 45.9
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 4.4e-46 189.1 265 47.2
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.9e-45 185.7 275 45.8
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 1.9e-44 183.7 260 48.8
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 2.4e-44 183.3 259 45.2
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.0e-42 177.9 269 46.5
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 1.0e-42 177.9 266 44.4
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.7e-42 177.2 217 53.0
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 3.0e-42 176.4 242 45.5
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 7.6e-38 161.8 270 45.9
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.8e-37 159.5 270 43.7
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 6.4e-37 158.7 267 44.9
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 8.4e-37 158.3 267 43.1
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 8.4e-37 158.3 270 43.7
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.1e-36 157.9 271 45.0
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.4e-36 157.5 273 44.0
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 1.9e-36 157.1 260 45.0
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 2.4e-36 156.8 253 45.5
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.2e-36 156.4 252 44.8
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 4.1e-36 156.0 260 44.6
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.7e-35 153.3 271 40.2
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.6e-35 152.5 270 43.7
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.3e-34 150.2 133 63.9
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 2.3e-34 150.2 134 64.2
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 3.0e-34 149.8 133 64.7
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.0e-34 149.8 133 64.7
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.0e-34 149.8 133 64.7
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.6e-34 148.7 246 44.3
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.9e-33 147.1 133 62.4
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.4e-31 141.0 249 40.6
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 4.0e-31 139.4 270 38.5
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 8.9e-31 138.3 274 39.8
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 3.4e-30 136.3 261 37.9
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 4.9e-29 132.5 244 39.8
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 5.4e-28 129.0 253 39.9
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 1.2e-27 127.9 214 42.1
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 2.7e-27 126.7 256 39.5
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.7e-27 126.7 112 64.3
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 3.5e-27 126.3 261 37.5
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.3e-26 124.4 260 37.7
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.3e-26 123.6 292 37.3
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 5.1e-26 122.5 262 37.4
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 9.6e-25 118.2 247 38.9
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 3.6e-24 116.3 247 36.0
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 4.8e-24 115.9 221 40.3
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 5.3e-23 112.5 261 35.2
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 1.5e-22 110.9 261 34.1
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.5e-22 110.9 261 34.5
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 2.6e-22 110.2 267 35.6
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 4.5e-22 109.4 265 34.7
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 6.4e-21 105.5 251 36.3
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 6.4e-21 105.5 244 36.1
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 8.4e-21 105.1 258 32.9
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.1e-20 104.8 256 37.1
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.1e-20 104.8 145 45.5
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 1.9e-20 104.0 189 41.3
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.4e-20 103.6 114 57.0
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 3.2e-20 103.2 267 32.6
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 1.6e-19 100.9 263 32.3
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 3.5e-19 99.8 260 35.0
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 4.6e-19 99.4 136 46.3
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 4.6e-19 99.4 127 52.0
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 6.0e-19 99.0 260 33.8
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 6.0e-19 99.0 247 32.8
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.8e-18 97.4 256 30.9
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 6.7e-18 95.5 225 33.8
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 6.7e-18 95.5 222 35.6
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 8.7e-18 95.1 234 34.6
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.1e-17 94.7 263 32.7
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 1.1e-17 94.7 243 35.4
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 1.9e-17 94.0 176 40.3
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.5e-17 93.6 268 32.5
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 7.4e-17 92.0 82 59.8
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 9.6e-17 91.7 74 64.9
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 9.6e-17 91.7 121 47.1
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 9.6e-17 91.7 266 35.0
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.6e-16 90.9 272 31.2
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.8e-16 90.1 230 35.2
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.8e-16 90.1 249 34.5
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 4.8e-16 89.4 205 36.1
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 6.2e-16 89.0 271 32.5
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 8.1e-16 88.6 107 50.5
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 3.1e-15 86.7 87 59.8
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 5.3e-15 85.9 253 33.2
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.2e-14 84.7 71 66.2
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 1.5e-14 84.3 94 53.2
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.5e-14 84.3 249 33.7
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 3.4e-14 83.2 226 34.1
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 4.5e-14 82.8 268 32.1
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 7.6e-14 82.0 72 65.3
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 2.2e-13 80.5 72 63.9
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.2e-13 80.5 249 33.7
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.9e-13 80.1 255 32.5
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 1.4e-12 77.8 327 29.1
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 3.2e-12 76.6 72 61.1
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 1.6e-11 74.3 72 56.9
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 1.6e-11 74.3 182 35.2
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.1e-11 73.9 90 50.0
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.5e-11 73.2 246 29.3
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 7.9e-11 72.0 258 29.8
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.0e-10 71.6 262 29.0
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.8e-10 70.9 117 42.7
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.8e-10 70.9 247 29.1
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 3.0e-10 70.1 253 30.0
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 3.0e-10 70.1 69 52.2
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 3.0e-10 70.1 250 30.8
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.1e-09 68.2 197 34.0
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.5e-09 67.8 66 54.5
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.9e-09 67.4 70 52.9
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 3.3e-09 66.6 147 31.3
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 3.3e-09 66.6 240 28.8
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 4.3e-09 66.2 165 31.5
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.3e-08 64.7 118 39.0
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 1.6e-08 64.3 189 29.6
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.8e-08 62.8 65 52.3
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 8.1e-08 62.0 243 27.2
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 1.8e-07 60.8 125 37.6
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 3.1e-07 60.1 241 27.4
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 5.3e-07 59.3 70 51.4
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 9.0e-07 58.5 127 40.2
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 2.6e-06 57.0 158 31.6
SEGI_41193 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 4.5e-06 56.2 109 38.5
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.0e-05 55.1 248 27.0


User provided reference genes

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