Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.35WTTC Arachis hypogaea HOM05D006340 ORTHO05D007568 3.3e-257 891.7 649 100.0
arahy.Tifrunner.gnm1.ann1.31L8TN Arachis hypogaea HOM05D006340 ORTHO05D007568 1.3e-245 853.2 653 97.7
Glyma.20G096700 Glycine max HOM05D006340 ORTHO05D007568 2.4e-143 513.5 663 74.1
Glyma.10G146700 Glycine max HOM05D006340 ORTHO05D007568 1.2e-142 511.1 666 74.0
Phvul.007G201700 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 9.0e-138 495.0 663 72.7
Ca_10176_v3 Cicer arietinum L. HOM05D006340 ORTHO05D007568 4.9e-136 489.2 666 72.7
Medtr1g084120 Medicago truncatula HOM05D006340 ORTHO05D007568 9.3e-135 485.0 665 68.4
TPR.G2586 Trifolium pratense HOM05D006340 ORTHO05D007568 6.2e-131 472.2 681 69.9
Lalb_Chr02g0147781 Lupinus albus HOM05D006340 ORTHO05D007568 4.9e-128 462.6 655 71.1
Lj5g0007706 Lotus japonicus HOM05D006340 ORTHO05D007568 2.8e-123 446.8 674 67.7
VMungo0720G2454 Vigna mungo HOM05D006340 ORTHO05D007568 2.4e-122 443.7 654 68.7
QL03p014074 Quercus lobata HOM05D006340 ORTHO05D007568 1.1e-103 381.7 670 63.7
TAR362G0132 Trochodendron aralioides HOM05D006340 ORTHO05D007568 1.9e-103 380.9 660 63.3
Cfa006707 Carpinus fangiana HOM05D006340 ORTHO05D007568 3.3e-100 370.2 670 63.7
Psat6g152600 Pisum sativum HOM05D006340 ORTHO05D007568 4.8e-99 366.3 521 60.5
Glyma.03G231000 Glycine max HOM05D006340 ORTHO05D007568 7.0e-98 362.5 655 65.0
Phvul.001G224800 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 1.2e-97 361.7 658 65.2
TWI36G0703 Tripterygium wilfordii HOM05D006340 ORTHO05D007568 2.5e-95 354.0 666 63.8
Glyma.19G228200 Glycine max HOM05D006340 ORTHO05D007568 5.5e-95 352.8 654 64.5
Actinidia35518 Actinidia chinensis HOM05D006340 ORTHO05D007568 7.2e-95 352.4 678 61.5
VMungo1383G0056 Vigna mungo HOM05D006340 ORTHO05D007568 9.4e-95 352.1 655 64.4
Ciclev10000538m.g Citrus clementina HOM05D006340 ORTHO05D007568 8.0e-94 349.0 662 62.2
Haze_04056 Corylus avellana HOM05D006340 ORTHO05D007568 2.3e-93 347.4 674 58.6
CSS0010691 Camellia sinensis var. sinensis HOM05D006340 ORTHO05D007568 3.0e-93 347.1 666 60.8
TAR633G1326 Trochodendron aralioides HOM05D006340 ORTHO05D007568 4.0e-93 346.7 655 61.5
Prupe.6G312400 Prunus persica HOM05D006340 ORTHO05D007568 5.7e-92 342.8 684 61.3
Atru.chr2.357 Acer truncatum HOM05D006340 ORTHO05D007568 2.2e-91 340.9 676 60.8
Potri.013G008200 Populus trichocarpa HOM05D006340 ORTHO05D007568 1.8e-90 337.8 665 60.6
CiPaw.07G030100 Carya illinoinensis HOM05D006340 ORTHO05D007568 4.1e-90 336.7 671 61.5
CsaV3_2G007150 Cucumis sativus L. HOM05D006340 ORTHO05D007568 5.9e-89 332.8 647 60.6
Potri.005G013000 Populus trichocarpa HOM05D006340 ORTHO05D007568 7.7e-89 332.4 669 59.3
Nn3g21728 Nelumbo nucifera HOM05D006340 ORTHO05D007568 6.5e-88 329.3 671 59.2
Actinidia16863 Actinidia chinensis HOM05D006340 ORTHO05D007568 5.5e-87 326.2 711 49.1
Sabra13G0006900 Salix brachista HOM05D006340 ORTHO05D007568 6.1e-86 322.8 673 50.4
Hma1.2p1_0008F-1.1_g005560 Hydrangea macrophylla HOM05D006340 ORTHO05D007568 5.2e-85 319.7 664 61.4
Thecc.05G323700 Theobroma cacao HOM05D006340 ORTHO05D007568 1.5e-84 318.2 672 59.8
ClCG02G014860 Citrullus lanatus HOM05D006340 ORTHO05D007568 5.7e-84 316.2 669 45.0
MD00G1208300 Malus domestica HOM05D006340 ORTHO05D007568 9.8e-84 315.5 665 60.2
Sed0011043 Sechium edule HOM05D006340 ORTHO05D007568 2.2e-83 314.3 649 59.8
Lju926C5T2 Lonicera japonica HOM05D006340 ORTHO05D007568 6.3e-83 312.8 652 55.8
MBI18_g32031_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 6.3e-83 312.8 685 44.4
Aqoxy2G02721 Aquilegia oxysepala HOM05D006340 ORTHO05D007568 1.1e-82 312.0 662 59.4
Duzib128G1170 Durio zibethinus HOM05D006340 ORTHO05D007568 1.8e-82 311.2 641 60.5
Duzib177G0712 Durio zibethinus HOM05D006340 ORTHO05D007568 3.1e-82 310.5 672 60.0
Sed0017369 Sechium edule HOM05D006340 ORTHO05D007568 4.1e-82 310.1 663 58.1
CANSAT54G2981 Cannabis sativa HOM05D006340 ORTHO05D007568 5.4e-82 309.7 660 60.0
MELO3C004178.2 Cucumis melo HOM05D006340 ORTHO05D007568 7.7e-81 305.8 652 49.8
Dinv30898 Davidia involucrata HOM05D006340 ORTHO05D007568 3.8e-80 303.5 656 40.9
Cpa.g.sc48.167 Carica papaya HOM05D006340 ORTHO05D007568 2.5e-79 300.8 655 59.5
Manes.09G177400 Manihot esculenta HOM05D006340 ORTHO05D007568 3.2e-79 300.4 657 51.6
GSVIVG01031248001 Vitis vinifera HOM05D006340 ORTHO05D007568 4.2e-79 300.1 659 58.9
COL.COLO4_05545 Corchorus olitorius HOM05D006340 ORTHO05D007568 3.6e-78 297.0 663 60.3
CiPaw.08G154900 Carya illinoinensis HOM05D006340 ORTHO05D007568 6.8e-77 292.7 669 58.7
AUR62006742 Chenopodium quinoa HOM05D006340 ORTHO05D007568 2.0e-76 291.2 651 60.5
PSO761G0363 Papaver somniferum HOM05D006340 ORTHO05D007568 2.6e-76 290.8 650 58.8
MBI19_g03242_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 3.4e-76 290.4 649 49.5
DCAR_025287 Daucus carota HOM05D006340 ORTHO05D007568 4.4e-76 290.0 661 57.9
ATR0693G206 Amborella trichopoda HOM05D006340 ORTHO05D007568 5.7e-76 289.7 646 59.4
Lj5C328T5 Lonicera japonica HOM05D006340 ORTHO05D007568 5.7e-76 289.7 654 55.0
PGR031G1700 Punica granatum HOM05D006340 ORTHO05D007568 1.7e-75 288.1 638 61.3
Gohir.D11G284300 Gossypium hirsutum HOM05D006340 ORTHO05D007568 2.8e-75 287.3 661 59.0
MD12G1205300 Malus domestica HOM05D006340 ORTHO05D007568 1.8e-74 284.6 667 57.6
Sabra05G0021400 Salix brachista HOM05D006340 ORTHO05D007568 2.4e-74 284.3 690 35.4
arahy.Tifrunner.gnm1.ann1.Y7QP4L Arachis hypogaea HOM05D006340 ORTHO05D007568 3.1e-74 283.9 646 55.3
Lsat_1_v5_gn_5_40480 Lactuca sativa HOM05D006340 ORTHO05D007568 4.1e-74 283.5 636 59.4
PSO210G6591 Papaver somniferum HOM05D006340 ORTHO05D007568 2.0e-73 281.2 540 66.1
ECA246G2180 Erigeron canadensis HOM05D006340 ORTHO05D007568 5.0e-72 276.6 643 60.3
Os01g0300900 Oryza sativa ssp. japonica HOM05D006340 ORTHO05D007568 5.0e-72 276.6 643 52.3
AUR62000387 Chenopodium quinoa HOM05D006340 ORTHO05D007568 5.6e-71 273.1 650 59.2
DCAR_029344 Daucus carota HOM05D006340 ORTHO05D007568 3.6e-70 270.4 636 44.3
Gorai.007G307200 Gossypium raimondii HOM05D006340 ORTHO05D007568 3.0e-69 267.3 661 58.1
Gorai.004G236300 Gossypium raimondii HOM05D006340 ORTHO05D007568 4.0e-69 266.9 655 57.4
HanXRQChr11g0324231 Helianthus annuus HOM05D006340 ORTHO05D007568 5.2e-69 266.5 633 60.5
Cc02_g35160 Coffea canephora HOM05D006340 ORTHO05D007568 6.8e-69 266.2 672 53.6
Zm00001eb340330 Zea mays HOM05D006340 ORTHO05D007568 1.2e-68 265.4 656 53.8
Zm00001eb130130 Zea mays HOM05D006340 ORTHO05D007568 2.0e-68 264.6 654 48.8
Nitab4.5_0001338g0100 Nicotiana tabacum HOM05D006340 ORTHO05D007568 1.7e-67 261.5 689 51.1
CAN.G1076.21 Capsicum annuum HOM05D006340 ORTHO05D007568 2.9e-67 260.8 667 51.7
Gohir.A08G205400 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.1e-66 258.8 670 56.9
vmacro01568 Vaccinium macrocarpon HOM05D006340 ORTHO05D007568 1.1e-66 258.8 681 46.8
PGSC0003DMG400002763 Solanum tuberosum HOM05D006340 ORTHO05D007568 1.4e-66 258.5 663 58.1
Rhsim11G0096500 Rhododendron simsii HOM05D006340 ORTHO05D007568 2.4e-66 257.7 663 53.2
Sopen01g044100 Solanum pennellii HOM05D006340 ORTHO05D007568 2.7e-65 254.2 662 58.0
Gohir.D08G222500 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.3e-64 251.9 655 56.8
Nitab4.5_0004525g0020 Nicotiana tabacum HOM05D006340 ORTHO05D007568 6.6e-64 249.6 660 52.3
Eucgr.H03294 Eucalyptus grandis HOM05D006340 ORTHO05D007568 2.5e-63 247.7 652 56.0
EL10Ac4g09463 Beta vulgaris HOM05D006340 ORTHO05D007568 1.4e-61 241.9 651 56.5
Hund07311 Selenicereus undatus HOM05D006340 ORTHO05D007568 3.4e-60 237.3 653 54.8
RcHm_v2.0_Chr3g0457201 Rosa chinensis HOM05D006340 ORTHO05D007568 4.4e-60 236.9 681 55.8
HPP92_005420 Vanilla planifolia HOM05D006340 ORTHO05D007568 1.1e-58 232.3 576 61.6
Ah.06g195990 Amaranthus hybridus HOM05D006340 ORTHO05D007568 9.2e-58 229.2 665 55.2
arahy.Tifrunner.gnm1.ann1.9H9EE5 Arachis hypogaea HOM05D006340 ORTHO05D007568 2.7e-57 227.6 650 43.4
Oeu052936.1 Olea europaea HOM05D006340 ORTHO05D007568 2.3e-56 224.6 659 54.6
Oeu053742.1 Olea europaea HOM05D006340 ORTHO05D007568 3.0e-56 224.2 639 56.5
Dinv24462 Davidia involucrata HOM05D006340 ORTHO05D007568 7.3e-55 219.5 345 43.8
FvH4_6g07501 Fragaria vesca HOM05D006340 ORTHO05D007568 1.1e-53 215.7 693 54.4
FAN14G3207 Fragaria x ananassa HOM05D006340 ORTHO05D007568 1.2e-52 212.2 692 53.6
FAN02G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 2.0e-52 211.5 687 54.6
THA.LOC104816894 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 7.5e-52 209.5 540 49.6
Migut.N00937 Erythranthe guttata HOM05D006340 ORTHO05D007568 3.1e-45 187.6 555 53.2
Sabra05G0020800 Salix brachista HOM05D006340 ORTHO05D007568 5.2e-45 186.8 345 61.4
Sc16g0009070 Simmondsia chinensis HOM05D006340 ORTHO05D007568 8.1e-38 162.9 491 49.7
Sabra05G0009200 Salix brachista HOM05D006340 ORTHO05D007568 1.8e-37 161.8 202 76.7
Solyc01g100600.4 Solanum lycopersicum HOM05D006340 ORTHO05D007568 6.9e-37 159.8 501 47.3
SGA_v2.0_scaffold5G02892 Striga asiatica HOM05D006340 ORTHO05D007568 2.0e-36 158.3 672 39.0
FAN09G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 1.1e-34 152.5 529 48.0
Sabra05G0020900 Salix brachista HOM05D006340 ORTHO05D007568 3.2e-34 151.0 274 42.0
Peaxi162Scf01061g00014 Petunia axillaris HOM05D006340 ORTHO05D007568 4.6e-33 147.1 515 31.7
CDE08G0055 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 1.1e-29 136.0 475 45.7
MSTRG.27937 Avicennia marina HOM05D006340 ORTHO05D007568 1.4e-29 135.6 203 70.9
PSO541G0443 Papaver somniferum HOM05D006340 ORTHO05D007568 2.4e-29 134.8 274 38.7
Gohir.A11G274100 Gossypium hirsutum HOM05D006340 ORTHO05D007568 5.3e-29 133.7 508 46.7
Dinv24463 Davidia involucrata HOM05D006340 ORTHO05D007568 1.2e-28 132.5 177 78.0
CDE02G0367 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 5.8e-28 130.2 631 37.4
SMO115G0101 Selaginella moellendorffii HOM05D006340 ORTHO05D007568 3.0e-24 117.9 612 35.3
MSTRG.27938 Avicennia marina HOM05D006340 ORTHO05D007568 9.6e-23 112.8 375 31.5
SalBow3G0642 Salvia bowleyana HOM05D006340 ORTHO05D007568 2.4e-21 108.2 299 35.1
unitig_52.g17414 Utricularia gibba HOM05D006340 ORTHO05D007568 4.0e-21 107.5 232 46.6
FAN05G4753 Fragaria x ananassa HOM05D006340 ORTHO05D007568 1.5e-20 105.5 397 50.6
THA.LOC104824492 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 5.5e-18 97.1 58 69.0
Sabra05G0022400 Salix brachista HOM05D006340 ORTHO05D007568 6.7e-16 90.1 230 35.2
ECA169G0006 Erigeron canadensis HOM05D006340 ORTHO05D007568 1.7e-11 75.5 54 63.0
SMO022G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.3e-08 65.1 53 50.9
arahy.Tifrunner.gnm1.ann1.IB7YTW Arachis hypogaea HOM05D001137 ORTHO05D001967 3.0e-08 64.7 184 23.4
SMO201G0046 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.9e-08 64.3 48 50.0
SMO228G0070 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 8.7e-08 63.2 46 52.2
AagrBONN_evm.TU.Sc2ySwM_117.2646 Anthoceros agrestis HOM05D001137 ORTHO05D007568 1.1e-07 62.8 195 23.6
SMO199G0080 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 1.5e-07 62.4 46 52.2
SMO274G0045 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.5e-07 62.4 46 52.2
arahy.Tifrunner.gnm1.ann1.PM4BFB Arachis hypogaea HOM05D001137 ORTHO05D001967 1.9e-07 62.0 184 22.8
Aa31LG5G15960 Aethionema arabicum HOM05D001137 ORTHO05D001967 3.3e-07 61.2 203 24.6
HPP92_006046 Vanilla planifolia HOM05D003320 ORTHO05D003941 3.3e-07 61.2 52 48.1
MBI18_g03639_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 4.3e-07 60.8 77 48.1
BcaB05g24833 Brassica carinata HOM05D003320 ORTHO05D003941 7.4e-07 60.1 54 40.7
Mapoly0031s0090 Marchantia polymorpha HOM05D003320 ORTHO05D003941 7.4e-07 60.1 47 48.9
Oeu020840.1 Olea europaea HOM05D001137 ORTHO05D001967 7.4e-07 60.1 187 25.1
SMO125G0002 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 7.4e-07 60.1 46 50.0
CANSAT25G3609 Cannabis sativa HOM05D003320 ORTHO05D003941 1.3e-06 59.3 46 47.8
Gohir.A13G174200 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.3e-06 59.3 49 53.1
Gohir.D13G179900 Gossypium hirsutum HOM05D001137 ORTHO05D001967 1.3e-06 59.3 49 53.1
Gorai.013G205300 Gossypium raimondii HOM05D001137 ORTHO05D001967 1.3e-06 59.3 49 53.1
SMO360G0028 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.3e-06 59.3 46 50.0
TWI12G0524 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 1.3e-06 59.3 49 53.1
CSS0013666 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 1.6e-06 58.9 48 50.0
CBR_g42082 Chara braunii HOM05D003320 ORTHO05D003941 2.1e-06 58.5 48 47.9
MBI16_g10850_MAGBIO Magnolia biondii HOM05D003320 ORTHO05D003941 2.1e-06 58.5 46 50.0
Psat5g193320 Pisum sativum HOM05D001137 ORTHO05D001967 2.1e-06 58.5 49 49.0
SMO077G0003 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.8e-06 58.2 46 47.8
SMO253G0002 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.8e-06 58.2 46 47.8
Migut.L00877 Erythranthe guttata HOM05D003320 ORTHO05D003941 3.7e-06 57.8 46 52.2
CSS0049494 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 4.8e-06 57.4 46 50.0
HanXRQChr16g0502481 Helianthus annuus HOM05D003320 ORTHO05D003941 4.8e-06 57.4 54 48.1
Lsat_1_v5_gn_4_110741 Lactuca sativa HOM05D003320 ORTHO05D003941 4.8e-06 57.4 54 46.3
Lalb_Chr13g0302781 Lupinus albus HOM05D003320 ORTHO05D003941 4.8e-06 57.4 46 50.0
Nitab4.5_0002344g0120 Nicotiana tabacum HOM05D001137 ORTHO05D001967 4.8e-06 57.4 192 25.0
Oeu057198.3 Olea europaea HOM05D003320 ORTHO05D003941 4.8e-06 57.4 46 50.0
PSO017G6858 Papaver somniferum HOM05D003320 ORTHO05D003941 4.8e-06 57.4 46 47.8
PSO478G2958 Papaver somniferum HOM05D003320 ORTHO05D003941 4.8e-06 57.4 46 47.8
SMO171G0124 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 4.8e-06 57.4 44 54.5
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 4.8e-06 57.4 46 50.0
HPP92_027115 Vanilla planifolia HOM05D003320 ORTHO05D003941 4.8e-06 57.4 46 47.8
Glyma.17G080100 Glycine max HOM05D003320 ORTHO05D003941 6.3e-06 57.0 46 50.0
Peaxi162Scf00201g00346 Petunia axillaris HOM05D003320 ORTHO05D003941 6.3e-06 57.0 50 46.0
HPP92_013434 Vanilla planifolia HOM05D003320 ORTHO05D003941 6.3e-06 57.0 46 47.8
CAN.G1652.17 Capsicum annuum HOM05D001137 ORTHO05D001967 8.2e-06 56.6 47 46.8
Cc00_g26630 Coffea canephora HOM05D001137 ORTHO05D001967 8.2e-06 56.6 52 46.2
ECA232G1579 Erigeron canadensis HOM05D003320 ORTHO05D003941 8.2e-06 56.6 54 46.3
Glyma.03G236500 Glycine max HOM05D001137 ORTHO05D001967 8.2e-06 56.6 194 24.7
Lj5A258T11 Lonicera japonica HOM05D001137 ORTHO05D001967 8.2e-06 56.6 43 53.5
Nitab4.5_0002144g0040 Nicotiana tabacum HOM05D001137 ORTHO05D001967 8.2e-06 56.6 43 51.2
Phvul.003G183500 Phaseolus vulgaris HOM05D003320 ORTHO05D003941 8.2e-06 56.6 46 52.2
Prupe.5G207100 Prunus persica HOM05D003320 ORTHO05D003941 8.2e-06 56.6 46 47.8
SMO090G0001 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 8.2e-06 56.6 46 47.8
Sopen01g042910 Solanum pennellii HOM05D001137 ORTHO05D001967 8.2e-06 56.6 196 25.5
SGA_v2.0_scaffold176G39381 Striga asiatica HOM05D001137 ORTHO05D001967 8.2e-06 56.6 47 48.9


User provided reference genes

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