Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 0.0e+00 1119.8 556 100.0
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 0.0e+00 1090.1 556 96.4
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 1.1e-229 800.0 503 78.1
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 6.8e-227 790.8 547 73.7
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 1.8e-224 782.7 566 71.7
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 2.4e-224 782.3 558 72.2
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 5.6e-221 771.2 536 73.5
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 1.8e-219 766.1 534 72.5
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 4.3e-189 665.2 509 64.0
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 4.3e-189 665.2 555 62.5
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 5.8e-186 654.8 556 61.2
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 2.9e-185 652.5 485 67.8
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 1.5e-181 640.2 542 62.0
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 4.3e-181 638.6 503 64.2
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 7.4e-181 637.9 514 60.9
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 9.6e-181 637.5 542 60.1
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 5.3e-179 631.7 522 65.9
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 5.8e-178 628.2 521 61.6
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 2.9e-177 625.9 461 67.5
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 3.2e-176 622.5 492 63.4
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 7.1e-176 621.3 498 61.6
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 8.7e-174 614.4 489 62.4
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 1.5e-173 613.6 471 63.1
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 3.3e-173 612.5 506 61.1
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 5.6e-173 611.7 489 62.4
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 1.3e-172 610.5 474 63.7
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 2.8e-172 609.4 467 63.2
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 4.8e-172 608.6 493 62.7
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 4.0e-171 605.5 464 63.4
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 1.2e-170 604.0 551 55.9
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 1.5e-170 603.6 417 67.9
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 2.6e-170 602.8 506 60.9
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 1.9e-168 596.7 473 62.8
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 9.3e-168 594.3 548 56.9
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 1.6e-167 593.6 482 62.4
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 3.0e-166 589.3 424 67.7
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 3.9e-166 589.0 438 63.5
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 6.3e-164 581.6 472 60.4
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 1.4e-163 580.5 473 60.0
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 4.1e-163 578.9 482 59.1
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 5.3e-163 578.6 418 64.8
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 2.0e-162 576.6 478 60.5
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 2.0e-162 576.6 470 60.9
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 4.5e-162 575.5 418 64.4
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 6.5e-161 571.6 472 61.4
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 1.2e-159 567.4 522 55.9
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 3.6e-159 565.8 538 54.1
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 6.1e-159 565.1 404 64.6
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 3.9e-158 562.4 541 54.3
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 2.5e-157 559.7 407 62.4
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 4.3e-157 558.9 470 58.7
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 4.3e-157 558.9 512 56.2
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 7.4e-157 558.1 469 58.2
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 2.2e-156 556.6 540 53.3
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 4.8e-156 555.4 305 85.9
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 1.1e-155 554.3 429 61.5
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 5.3e-155 552.0 512 53.5
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 1.2e-154 550.8 518 55.8
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 3.4e-154 549.3 529 53.7
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 3.4e-154 549.3 461 59.2
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 7.7e-154 548.1 513 53.2
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 2.9e-153 546.2 477 57.2
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 5.0e-153 545.4 368 69.6
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 6.5e-153 545.0 408 61.5
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 4.2e-152 542.3 475 57.3
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 5.5e-152 542.0 468 57.5
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 5.5e-152 542.0 486 57.6
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 1.0e-150 537.7 494 55.5
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 8.8e-150 534.6 470 56.4
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 5.7e-149 531.9 468 57.1
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 1.3e-148 530.8 435 58.2
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 1.7e-148 530.4 471 55.4
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 2.8e-148 529.6 465 57.2
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 2.8e-148 529.6 437 57.0
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 1.1e-147 527.7 467 57.2
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 4.1e-147 525.8 297 83.5
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 2.6e-146 523.1 468 57.5
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 3.4e-146 522.7 468 57.1
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 5.9e-146 521.9 466 56.9
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 1.3e-145 520.8 467 57.0
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 1.1e-144 517.7 589 49.2
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 2.5e-144 516.5 508 54.3
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 4.0e-134 482.6 362 59.7
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 1.5e-133 480.7 443 55.3
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 1.3e-124 451.1 293 72.4
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 3.8e-121 439.5 386 52.6
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 2.3e-118 430.3 466 46.1
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 1.8e-115 420.6 299 66.6
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 4.5e-114 416.0 242 84.3
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 1.0e-113 414.8 411 47.7
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 2.9e-113 413.3 441 47.6
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 1.3e-105 387.9 285 66.0
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 3.3e-104 383.3 572 43.5
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 4.0e-102 376.3 288 63.5
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 4.1e-99 366.3 519 42.4
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.4e-94 351.3 261 66.7
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 2.4e-91 340.5 471 41.2
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 7.1e-91 339.0 220 69.1
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 3.0e-89 333.6 369 45.5
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 5.1e-89 332.8 381 43.8
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 2.1e-87 327.4 231 65.4
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 3.1e-86 323.6 246 65.4
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 6.9e-70 269.2 266 62.4
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 9.0e-70 268.9 269 54.3
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 3.2e-67 260.4 494 34.0
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 1.0e-65 255.4 260 56.9
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 9.0e-62 242.3 237 58.6
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 3.4e-61 240.4 168 66.7
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 1.2e-58 231.9 317 39.1
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 6.9e-46 189.5 329 32.8
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 2.7e-42 177.6 183 51.9
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 1.3e-39 168.7 103 79.6
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 1.7e-39 168.3 247 42.9
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 6.9e-38 162.9 380 28.2
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 2.1e-34 151.4 352 30.1
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 5.1e-33 146.7 99 73.7
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 4.5e-29 133.7 141 48.2
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 5.5e-27 126.7 91 69.2
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 4.1e-22 110.5 205 35.6
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 2.0e-21 108.2 98 54.1
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 7.5e-16 89.7 63 63.5
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 1.4e-14 85.5 66 68.2
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 4.7e-10 70.5 35 74.3
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 5.2e-09 67.0 41 68.3


User provided reference genes

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