Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 0.0e+00 1251.5 644 100.0
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 0.0e+00 1135.2 638 92.6
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 1.6e-179 633.6 663 56.4
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 9.8e-169 597.8 652 52.6
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 9.5e-164 581.3 649 51.6
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 3.7e-160 569.3 643 50.9
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.9e-156 557.0 654 50.8
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 1.4e-154 550.8 683 47.0
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 8.3e-152 541.6 638 48.0
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 1.1e-151 541.2 774 45.2
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 3.9e-149 532.7 680 46.5
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 2.8e-147 526.6 631 50.1
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 2.8e-147 526.6 861 41.0
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 1.4e-143 514.2 602 48.3
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 1.4e-143 514.2 675 45.5
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 4.7e-139 499.2 744 42.7
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 3.1e-130 469.9 671 42.8
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 9.2e-127 458.4 444 55.9
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 2.7e-126 456.8 543 47.7
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 4.6e-126 456.1 699 43.2
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 4.3e-124 449.5 571 46.8
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 1.3e-120 438.0 728 38.6
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 6.0e-118 429.1 753 39.3
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 1.2e-113 414.8 684 40.8
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 2.2e-112 410.6 730 37.7
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 7.9e-110 402.1 668 39.5
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 5.1e-109 399.4 675 40.6
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 2.5e-108 397.1 677 39.3
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.1e-106 391.7 696 37.8
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.9e-104 382.9 759 34.9
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 6.4e-104 382.5 659 39.3
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 8.4e-104 382.1 573 41.9
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 1.9e-103 380.9 663 38.8
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 5.5e-103 379.4 662 37.2
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 1.6e-102 377.9 761 34.8
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 1.3e-101 374.8 702 37.5
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.8e-101 374.4 623 40.4
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 8.7e-101 372.1 627 39.4
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 1.5e-100 371.3 671 38.0
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 4.3e-100 369.8 666 37.4
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 2.1e-99 367.5 633 37.8
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.0e-98 363.2 755 34.3
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.0e-97 360.9 656 37.0
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 3.4e-97 360.1 653 37.7
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 7.6e-97 359.0 558 41.6
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 7.6e-97 359.0 743 34.5
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 2.2e-96 357.5 680 36.5
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 1.9e-95 354.4 689 36.0
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 3.2e-95 353.6 640 37.7
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 7.9e-94 349.0 650 36.5
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 2.8e-91 340.5 789 32.6
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 9.0e-90 335.5 647 36.3
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 3.8e-88 330.1 458 42.8
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 8.5e-88 328.9 364 51.9
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.9e-87 327.8 353 54.1
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.1e-86 324.3 727 32.5
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 2.7e-86 323.9 405 45.9
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 3.9e-85 320.1 825 30.7
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 5.7e-84 316.2 752 32.2
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 4.8e-83 313.2 700 32.7
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 6.9e-82 309.3 653 35.4
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 5.9e-81 306.2 643 33.1
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 2.2e-80 304.3 709 32.0
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 9.4e-79 298.9 396 46.0
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 1.2e-78 298.5 635 33.9
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.6e-78 298.1 645 34.0
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 2.7e-78 297.4 642 33.0
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 3.9e-77 293.5 647 34.5
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 5.7e-76 289.7 630 33.3
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 1.3e-75 288.5 845 28.8
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 2.8e-75 287.3 667 34.3
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.1e-74 285.4 787 29.6
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-74 285.4 301 51.5
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 1.8e-74 284.6 677 31.9
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.3e-74 283.1 304 51.6
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 5.3e-74 283.1 566 34.1
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 7.0e-74 282.7 645 32.4
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 2.0e-73 281.2 783 31.2
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 5.9e-73 279.6 324 50.3
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 7.7e-73 279.3 652 32.2
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.0e-72 278.9 788 31.7
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 2.9e-72 277.3 647 32.3
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 6.5e-72 276.2 642 32.4
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 6.5e-72 276.2 647 34.0
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.9e-71 274.6 754 31.8
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 3.2e-71 273.9 298 48.7
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.4e-71 272.3 309 48.5
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 1.2e-70 271.9 668 31.7
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 1.4e-69 268.5 283 53.7
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 3.0e-69 267.3 314 47.8
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.1e-68 265.4 659 31.9
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.1e-68 265.4 685 32.3
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.6e-68 264.2 317 46.1
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 5.7e-68 263.1 497 39.2
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-67 261.9 140 96.4
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 2.8e-67 260.8 263 51.7
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 3.7e-67 260.4 676 31.1
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.6e-65 255.0 648 32.7
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.6e-65 254.2 705 29.5
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 2.6e-65 254.2 461 37.3
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 5.9e-65 253.1 815 29.2
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 6.5e-64 249.6 310 45.5
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.5e-63 246.5 269 49.8
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 4.7e-62 243.4 298 44.6
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 8.8e-61 239.2 302 46.0
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.4e-60 236.9 297 45.5
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 5.7e-60 236.5 301 42.9
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 9.8e-60 235.7 568 33.3
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.7e-59 235.0 671 29.4
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 7.0e-58 229.6 828 26.6
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.7e-57 227.6 306 42.5
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.7e-56 224.9 278 46.0
arahy.Tifrunner.gnm1.ann1.369X3S Arachis hypogaea HOM05D004076 ORTHO05D004606 1.5e-55 221.9 172 69.8
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 2.7e-54 217.6 117 94.0
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 3.6e-54 217.2 467 35.3
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.0e-53 214.2 640 29.4
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 4.0e-53 213.8 653 29.7
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 5.2e-53 213.4 415 37.8
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.5e-52 211.8 701 29.0
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 5.7e-52 209.9 468 35.7
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.8e-50 204.9 637 28.9
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 2.4e-50 204.5 274 45.3
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 1.2e-49 202.2 265 44.2
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 2.0e-49 201.4 654 29.1
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 7.7e-49 199.5 220 50.5
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.2e-46 192.2 214 50.0
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 4.6e-41 173.7 590 28.8
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 1.1e-39 169.1 832 25.7
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 3.1e-37 161.0 304 36.8
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-33 149.1 185 46.5
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-33 149.1 185 46.5
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 3.3e-31 141.0 122 63.1
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 9.5e-31 139.4 322 34.5
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 7.5e-28 129.8 159 44.7
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.3e-27 129.0 189 40.7
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.3e-24 119.0 219 37.4
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 3.9e-24 117.5 594 23.9
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 4.0e-21 107.5 121 43.8
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 5.2e-21 107.1 170 39.4
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 2.2e-19 101.7 174 38.5
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 2.2e-19 101.7 174 36.8
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 1.4e-18 99.0 202 34.2
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 2.4e-18 98.2 202 34.7
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 4.1e-18 97.4 204 34.8
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 7.1e-18 96.7 124 42.7
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.1e-17 95.1 84 58.3
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.1e-17 95.1 132 41.7
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 1.7e-16 92.0 354 25.7
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 1.1e-15 89.4 224 33.5
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 7.3e-15 86.7 227 30.4
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 9.6e-15 86.3 178 37.6
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 2.4e-13 81.6 129 34.9
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 8.9e-13 79.7 77 55.8
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 3.8e-11 74.3 119 37.8
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 7.1e-10 70.1 122 34.4
Medtr8g463810 Medicago truncatula HOM05D000208 ORTHO05D000130 1.5e-07 62.4 61 57.4
QL93p0319_0003 Quercus lobata HOM05D000002 ORTHO05D000001 3.3e-07 61.2 47 66.0


User provided reference genes

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