Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2Y9ZDG Arachis hypogaea HOM05D006410 ORTHO05D007914 3.2e-226 788.1 403 100.0
arahy.Tifrunner.gnm1.ann1.K0FU58 Arachis hypogaea HOM05D006410 ORTHO05D007914 1.6e-169 599.7 405 80.5
arahy.Tifrunner.gnm1.ann1.LV5WBC Arachis hypogaea HOM05D006410 ORTHO05D007914 1.7e-163 579.7 404 78.5
VMungo1383G1039 Vigna mungo HOM05D006410 ORTHO05D007914 2.3e-107 393.3 387 61.0
Glyma.18G212900 Glycine max HOM05D006410 ORTHO05D007914 4.0e-104 382.5 389 59.4
Glyma.09G273700 Glycine max HOM05D006410 ORTHO05D007914 3.4e-103 379.4 390 59.2
Medtr7g073510 Medicago truncatula HOM05D006410 ORTHO05D007914 7.6e-103 378.3 396 57.6
Lj1g0017463 Lotus japonicus HOM05D006410 ORTHO05D007914 9.9e-103 377.9 387 58.4
Psat3g118640 Pisum sativum HOM05D006410 ORTHO05D007914 1.3e-99 367.5 386 57.0
TPR.G24331 Trifolium pratense HOM05D006410 ORTHO05D007914 5.1e-99 365.5 396 57.1
Phvul.008G081500 Phaseolus vulgaris HOM05D006410 ORTHO05D007914 8.7e-99 364.8 390 58.2
arahy.Tifrunner.gnm1.ann1.PEH6CG Arachis hypogaea HOM05D006410 ORTHO05D007914 2.5e-93 346.7 217 87.1
arahy.Tifrunner.gnm1.ann1.A09QMR Arachis hypogaea HOM05D006410 ORTHO05D007914 2.7e-92 343.2 249 77.5
Lalb_Chr03g0043841 Lupinus albus HOM05D006410 ORTHO05D007914 1.9e-90 337.0 245 75.1
QL07p031892 Quercus lobata HOM05D006410 ORTHO05D007914 2.1e-76 290.4 364 50.5
Haze_22079 Corylus avellana HOM05D006410 ORTHO05D007914 2.3e-75 287.0 308 54.5
Cfa013491 Carpinus fangiana HOM05D006410 ORTHO05D007914 3.9e-75 286.2 286 57.3
Ciclev10012138m.g Citrus clementina HOM05D006410 ORTHO05D007914 7.4e-74 282.0 236 64.4
Prupe.6G295400 Prunus persica HOM05D006410 ORTHO05D007914 7.4e-74 282.0 400 46.2
CiPaw.10G165500 Carya illinoinensis HOM05D006410 ORTHO05D007914 1.7e-73 280.8 274 56.9
Lsat_1_v5_gn_9_39501 Lactuca sativa HOM05D006410 ORTHO05D007914 1.1e-72 278.1 288 58.0
Dinv16966 Davidia involucrata HOM05D006410 ORTHO05D007914 1.5e-71 274.2 234 63.7
Atru.chr8.91 Acer truncatum HOM05D006410 ORTHO05D007914 2.2e-70 270.4 245 58.8
Duzib212G0115 Durio zibethinus HOM05D006410 ORTHO05D007914 2.2e-70 270.4 337 46.9
GSVIVG01030169001 Vitis vinifera HOM05D006410 ORTHO05D007914 2.2e-70 270.4 345 49.0
Rhsim05G0231700 Rhododendron simsii HOM05D006410 ORTHO05D007914 2.9e-70 270.0 266 56.8
RcHm_v2.0_Chr3g0460291 Rosa chinensis HOM05D006410 ORTHO05D007914 2.9e-70 270.0 389 46.3
TAR633G1493 Trochodendron aralioides HOM05D006410 ORTHO05D007914 3.8e-70 269.6 238 61.3
HanXRQChr15g0464751 Helianthus annuus HOM05D006410 ORTHO05D007914 6.5e-70 268.9 278 55.4
MD04G1175900 Malus domestica HOM05D006410 ORTHO05D007914 6.5e-70 268.9 400 44.0
FAN05G4204 Fragaria x ananassa HOM05D006410 ORTHO05D007914 8.5e-70 268.5 376 46.3
ECA247G0827 Erigeron canadensis HOM05D006410 ORTHO05D007914 1.4e-69 267.7 268 57.1
Sabra06G0085200 Salix brachista HOM05D006410 ORTHO05D007914 4.2e-69 266.2 281 55.5
CsaV3_4G027230 Cucumis sativus L. HOM05D006410 ORTHO05D007914 5.5e-69 265.8 297 53.2
FvH4_6g09660 Fragaria vesca HOM05D006410 ORTHO05D007914 5.5e-69 265.8 364 46.4
FAN09G0831 Fragaria x ananassa HOM05D006410 ORTHO05D007914 5.5e-69 265.8 368 45.9
ClCG04G006320 Citrullus lanatus HOM05D006410 ORTHO05D007914 9.4e-69 265.0 299 53.5
Potri.006G109500 Populus trichocarpa HOM05D006410 ORTHO05D007914 1.2e-68 264.6 356 48.9
TWI77G0542 Tripterygium wilfordii HOM05D006410 ORTHO05D007914 1.2e-68 264.6 363 47.1
MD12G1190300 Malus domestica HOM05D006410 ORTHO05D007914 2.1e-68 263.8 416 43.3
Manes.09G123200 Manihot esculenta HOM05D006410 ORTHO05D007914 8.0e-68 261.9 235 62.6
FAN02G1808 Fragaria x ananassa HOM05D006410 ORTHO05D007914 1.0e-67 261.5 396 44.2
FAN14G0316 Fragaria x ananassa HOM05D006410 ORTHO05D007914 1.8e-67 260.8 297 51.5
COL.COLO4_03931 Corchorus olitorius HOM05D006410 ORTHO05D007914 2.3e-67 260.4 340 48.2
Eucgr.J00376 Eucalyptus grandis HOM05D006410 ORTHO05D007914 5.2e-67 259.2 306 52.9
Eucgr.A00566 Eucalyptus grandis HOM05D006410 ORTHO05D007914 8.8e-67 258.5 306 52.6
Solyc10g085690.2 Solanum lycopersicum HOM05D006410 ORTHO05D007914 2.0e-66 257.3 240 58.3
Sopen10g035110 Solanum pennellii HOM05D006410 ORTHO05D007914 2.0e-66 257.3 240 57.9
Thecc.04G150000 Theobroma cacao HOM05D006410 ORTHO05D007914 2.6e-66 256.9 251 55.4
CAN.G1018.3 Capsicum annuum HOM05D006410 ORTHO05D007914 4.4e-66 256.1 264 55.3
arahy.Tifrunner.gnm1.ann1.CPU7B3 Arachis hypogaea HOM05D006410 ORTHO05D007914 9.7e-66 255.0 184 77.7
Eucgr.G01626 Eucalyptus grandis HOM05D006410 ORTHO05D007914 1.7e-65 254.2 238 58.0
PGR004G0643 Punica granatum HOM05D006410 ORTHO05D007914 2.2e-65 253.8 291 50.9
Actinidia20795 Actinidia chinensis HOM05D006410 ORTHO05D007914 3.7e-65 253.1 225 60.9
Eucgr.G00130 Eucalyptus grandis HOM05D006410 ORTHO05D007914 4.8e-65 252.7 306 52.0
Peaxi162Scf00146g01120 Petunia axillaris HOM05D006410 ORTHO05D007914 1.1e-64 251.5 231 57.6
CANSAT21G1321 Cannabis sativa HOM05D006410 ORTHO05D007914 4.1e-64 249.6 368 46.2
Eucgr.H04867 Eucalyptus grandis HOM05D006410 ORTHO05D007914 5.3e-64 249.2 223 60.1
Eucgr.K01292 Eucalyptus grandis HOM05D006410 ORTHO05D007914 2.6e-63 246.9 298 51.0
Nitab4.5_0009611g0010 Nicotiana tabacum HOM05D006410 ORTHO05D007914 2.6e-63 246.9 289 50.5
PSO339G1476 Papaver somniferum HOM05D006410 ORTHO05D007914 2.6e-63 246.9 237 56.5
PSO384G4459 Papaver somniferum HOM05D006410 ORTHO05D007914 1.3e-62 244.6 237 56.1
Hma1.2p1_0537F.1_g174300 Hydrangea macrophylla HOM05D006410 ORTHO05D007914 1.5e-61 241.1 230 57.8
Nitab4.5_0000381g0170 Nicotiana tabacum HOM05D006410 ORTHO05D007914 1.5e-61 241.1 324 46.6
vmacro20378 Vaccinium macrocarpon HOM05D006410 ORTHO05D007914 1.9e-61 240.7 256 55.1
Aqoxy4G03284 Aquilegia oxysepala HOM05D006410 ORTHO05D007914 2.5e-61 240.4 244 55.7
Gorai.005G003500 Gossypium raimondii HOM05D006410 ORTHO05D007914 5.5e-61 239.2 352 44.3
Gohir.D02G003000 Gossypium hirsutum HOM05D006410 ORTHO05D007914 7.2e-61 238.8 352 44.3
Ca_07767_v3 Cicer arietinum L. HOM05D006410 ORTHO05D007914 8.0e-60 235.3 189 67.7
Gohir.A02G002700 Gossypium hirsutum HOM05D006410 ORTHO05D007914 4.0e-59 233.0 291 48.5
Nn2g10260 Nelumbo nucifera HOM05D006410 ORTHO05D007914 5.2e-59 232.6 239 54.0
Cc06_g00300 Coffea canephora HOM05D006410 ORTHO05D007914 6.7e-59 232.3 277 51.6
CDE04G0338 Ceratophyllum demersum HOM05D006410 ORTHO05D007914 2.0e-58 230.7 234 53.8
Hund19754 Selenicereus undatus HOM05D006410 ORTHO05D007914 3.7e-57 226.5 245 53.9
EL10Ac7g17116 Beta vulgaris HOM05D006410 ORTHO05D007914 2.4e-56 223.8 292 49.0
Sc07g0005960 Simmondsia chinensis HOM05D006410 ORTHO05D007914 2.4e-56 223.8 190 63.7
AUR62029781 Chenopodium quinoa HOM05D006410 ORTHO05D007914 3.1e-56 223.4 295 48.8
SalBow5G5142 Salvia bowleyana HOM05D006410 ORTHO05D007914 4.1e-56 223.0 241 52.3
Zm00001eb395200 Zea mays HOM05D006410 ORTHO05D007914 5.3e-56 222.6 261 50.2
Ca_07774_v3 Cicer arietinum L. HOM05D006410 ORTHO05D007914 9.1e-56 221.9 213 60.1
BcaB01g03675 Brassica carinata HOM05D006410 ORTHO05D007914 7.7e-55 218.8 275 48.0
HPP92_026801 Vanilla planifolia HOM05D006410 ORTHO05D007914 1.3e-54 218.0 277 47.3
Carub.0004s2056 Capsella rubella HOM05D006410 ORTHO05D007914 1.7e-54 217.6 225 54.2
THA.LOC104806212 Tarenaya hassleriana HOM05D006410 ORTHO05D007914 1.7e-54 217.6 200 59.5
Thhalv10017800m.g Eutrema salsugineum HOM05D006410 ORTHO05D007914 2.2e-54 217.2 286 48.6
HPP92_000776 Vanilla planifolia HOM05D006410 ORTHO05D007914 2.9e-54 216.9 277 46.9
MSTRG.5489 Avicennia marina HOM05D006410 ORTHO05D007914 1.5e-53 214.5 221 52.9
CARHR133250 Cardamine hirsuta HOM05D006410 ORTHO05D007914 1.5e-53 214.5 216 56.0
ATR1127G206 Amborella trichopoda HOM05D006410 ORTHO05D007914 2.5e-53 213.8 242 50.4
AT2G38570 Arabidopsis thaliana HOM05D006410 ORTHO05D007914 7.2e-53 212.2 165 66.1
AL4G35850 Arabidopsis lyrata HOM05D006410 ORTHO05D007914 9.4e-53 211.8 165 65.5
A03p21390 Brassica napus HOM05D006410 ORTHO05D007914 1.2e-52 211.5 190 57.9
BraA03t11374Z Brassica rapa HOM05D006410 ORTHO05D007914 1.2e-52 211.5 252 48.8
Sp4g20910 Schrenkiella parvula HOM05D006410 ORTHO05D007914 3.6e-52 209.9 219 53.4
BcaC01g05529 Brassica carinata HOM05D006410 ORTHO05D007914 1.4e-51 208.0 244 50.0
BolC3t14920H Brassica oleracea HOM05D006410 ORTHO05D007914 1.4e-51 208.0 303 44.6
Lj3A940G60 Lonicera japonica HOM05D006410 ORTHO05D007914 6.8e-51 205.7 138 74.6
C03p25260 Brassica napus HOM05D006410 ORTHO05D007914 1.5e-50 204.5 244 49.2
SGA_v2.0_scaffold85G26601 Striga asiatica HOM05D006410 ORTHO05D007914 2.0e-47 194.1 262 45.0
SEGI_21416 Sequoiadendron giganteum HOM05D006410 ORTHO05D007914 4.0e-43 179.9 241 40.7
CSS0050432 Camellia sinensis var. sinensis HOM05D006410 ORTHO05D007914 1.7e-41 174.5 192 53.6
SalBow5G0627 Salvia bowleyana HOM05D006410 ORTHO05D007914 8.3e-41 172.2 182 52.7
BcaB01g00971 Brassica carinata HOM05D006410 ORTHO05D007914 3.1e-40 170.2 179 54.7
Cpa.g.sc86.77 Carica papaya HOM05D006410 ORTHO05D007914 5.4e-40 169.5 165 56.4
CSS0030024 Camellia sinensis var. sinensis HOM05D006410 ORTHO05D007914 3.8e-38 163.3 155 58.7
MELO3C025226.2 Cucumis melo HOM05D006410 ORTHO05D007914 2.1e-36 157.5 277 39.7
AagrBONN_evm.TU.Sc2ySwM_344.4011 Anthoceros agrestis HOM05D006410 ORTHO05D007914 4.1e-32 143.3 158 46.2
RhsimUnG0084100 Rhododendron simsii HOM05D006410 ORTHO05D007914 3.9e-30 136.7 118 59.3
CSS0025367 Camellia sinensis var. sinensis HOM05D006410 ORTHO05D007914 1.1e-29 135.2 96 70.8
Os03g0334100 Oryza sativa ssp. japonica HOM05D006410 ORTHO05D007914 3.3e-29 133.7 99 67.7
RhsimUnG0080900 Rhododendron simsii HOM05D006410 ORTHO05D007914 3.3e-29 133.7 117 58.1
Sed0027859 Sechium edule HOM05D006410 ORTHO05D007914 4.0e-27 126.7 117 59.0
MCO09G517 Micromonas commoda HOM05D006410 ORTHO05D007914 4.3e-21 106.7 165 37.0
CBR_g644 Chara braunii HOM05D006410 ORTHO05D007914 3.4e-18 97.1 167 35.3
Duzib151G0462 Durio zibethinus HOM05D006410 ORTHO05D007914 2.9e-17 94.0 61 73.8
SEGI_07330 Sequoiadendron giganteum HOM05D006410 ORTHO05D007914 4.0e-11 73.6 96 40.6
CDE04G1109 Ceratophyllum demersum HOM05D040252 ORTHO05D007914 3.8e-09 67.0 49 69.4
Cre17.g738200 Chlamydomonas reinhardtii HOM05D006410 ORTHO05D007914 1.6e-07 61.6 154 32.5
Lsat_1_v5_gn_8_97960 Lactuca sativa HOM05D006410 ORTHO05D007914 3.0e-06 57.4 52 63.5


User provided reference genes

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