Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 8.1e-165 583.6 272 100.0
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 1.6e-160 569.3 268 98.9
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 4.2e-129 464.9 268 79.9
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 5.5e-129 464.5 268 79.1
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 7.1e-129 464.2 266 80.5
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 7.1e-129 464.2 267 79.4
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 7.1e-129 464.2 268 78.4
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 1.2e-128 463.4 268 79.1
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.8e-127 459.5 268 79.5
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 5.6e-126 454.5 268 77.2
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 1.1e-124 450.3 268 75.7
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 6.9e-124 447.6 262 76.7
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 4.5e-123 444.9 265 74.7
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 4.5e-123 444.9 249 78.7
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 4.5e-123 444.9 268 75.4
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 7.6e-123 444.1 255 78.4
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 1.0e-122 443.7 268 76.5
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 3.8e-122 441.8 249 78.3
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.8e-122 441.8 264 76.1
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.8e-122 441.8 268 74.6
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 4.9e-122 441.4 264 76.1
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 4.9e-122 441.4 265 73.6
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 8.4e-122 440.7 265 74.3
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 5.5e-121 438.0 268 73.5
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 9.3e-121 437.2 268 74.6
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 2.1e-120 436.0 268 74.3
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 2.7e-120 435.6 252 77.4
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 3.5e-120 435.3 258 74.8
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 6.0e-120 434.5 269 73.2
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 6.0e-120 434.5 268 74.6
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 6.0e-120 434.5 251 77.7
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 6.0e-120 434.5 268 73.5
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.0e-119 433.7 260 73.1
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.3e-119 433.3 268 73.9
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.8e-119 433.0 268 73.9
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.0e-119 432.2 251 76.9
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 3.0e-119 432.2 251 76.9
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 3.9e-119 431.8 248 75.8
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 6.7e-119 431.0 252 77.4
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 8.7e-119 430.6 268 71.6
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 2.5e-118 429.1 253 74.7
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.5e-118 429.1 262 72.5
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 2.1e-117 426.0 267 70.8
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 2.8e-117 425.6 270 71.1
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 6.3e-117 424.5 248 75.8
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 8.2e-117 424.1 259 73.7
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 8.2e-117 424.1 269 70.6
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 6.9e-116 421.0 259 72.2
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 9.0e-116 420.6 261 72.4
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 2.6e-115 419.1 261 70.9
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 7.6e-115 417.5 261 71.6
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 1.7e-114 416.4 261 72.0
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.7e-114 416.4 256 73.4
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.1e-113 413.7 264 70.5
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.4e-113 413.3 270 69.3
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 1.4e-113 413.3 270 69.3
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 3.2e-113 412.1 247 74.1
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 5.5e-113 411.4 245 73.9
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 9.3e-113 410.6 261 69.3
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 2.7e-112 409.1 270 68.9
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 1.3e-111 406.8 258 69.8
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 1.8e-111 406.4 270 68.5
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 1.8e-111 406.4 270 68.5
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 3.0e-111 405.6 247 71.3
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 5.1e-111 404.8 268 66.8
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.1e-110 403.7 230 77.4
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 1.9e-110 402.9 227 78.0
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 1.9e-110 402.9 227 78.0
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 2.5e-110 402.5 268 66.4
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 2.5e-110 402.5 248 73.4
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 3.3e-110 402.1 265 67.2
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 4.3e-110 401.7 266 67.7
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 1.6e-109 399.8 270 66.3
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.6e-109 399.8 226 77.4
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 1.6e-109 399.8 247 72.5
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.2e-109 399.4 265 69.1
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.8e-109 398.3 265 66.8
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 6.3e-109 397.9 270 68.9
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.8e-108 396.4 268 65.7
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 3.1e-108 395.6 265 66.4
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 4.1e-108 395.2 265 66.4
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 5.3e-108 394.8 264 67.0
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 6.9e-108 394.4 257 67.3
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 9.0e-108 394.0 263 69.6
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.0e-107 392.9 269 66.2
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.0e-106 390.6 247 68.8
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.3e-106 390.2 246 72.0
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 1.7e-106 389.8 271 67.9
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 3.8e-106 388.7 267 65.9
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 5.0e-106 388.3 264 68.9
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.4e-105 386.7 269 67.3
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.9e-105 386.3 267 65.9
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 4.2e-105 385.2 267 65.2
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 6.1e-104 381.3 247 68.4
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 8.8e-103 377.5 353 53.3
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.7e-101 373.2 217 76.5
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.2e-101 370.9 237 70.9
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 1.1e-100 370.5 269 63.6
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.1e-100 369.0 266 64.7
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 3.1e-100 369.0 266 64.7
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 2.0e-99 366.3 245 66.1
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 2.0e-99 366.3 237 68.8
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 7.7e-99 364.4 360 51.4
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.0e-98 364.0 269 60.6
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.0e-98 364.0 247 68.0
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.9e-97 359.8 258 65.1
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 3.2e-97 359.0 247 64.8
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 1.2e-96 357.1 245 63.7
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 1.4e-95 353.6 247 63.2
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.4e-95 353.6 268 60.1
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 3.0e-95 352.4 210 74.3
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.9e-95 352.1 269 60.2
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.4e-92 343.6 251 64.1
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.0e-90 337.4 208 71.6
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 3.2e-89 332.4 245 62.4
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 8.8e-87 324.3 265 54.7
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.5e-86 323.6 183 77.0
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 1.5e-86 323.6 183 77.0
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 9.7e-86 320.9 267 56.2
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 1.3e-85 320.5 183 76.5
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.7e-85 318.9 266 56.0
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 2.7e-83 312.8 216 65.7
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 8.0e-80 301.2 238 58.8
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 5.2e-79 298.5 180 75.0
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 1.7e-74 283.5 267 49.4
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 6.5e-74 281.6 208 63.0
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.1e-73 280.8 206 63.1
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.1e-68 262.7 265 49.1
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 9.8e-62 241.1 269 45.4
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 9.8e-62 241.1 266 45.5
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 1.7e-61 240.4 228 51.8
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 7.0e-60 235.0 248 45.2
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 7.0e-60 235.0 269 47.6
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 2.7e-59 233.0 222 52.3
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.3e-58 230.7 134 75.4
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 8.9e-47 191.4 93 88.2
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 5.1e-34 149.1 109 66.1
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 8.9e-31 138.3 112 58.9
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 4.3e-25 119.4 134 44.8
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 1.3e-24 117.9 57 91.2
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 6.9e-23 112.1 56 83.9
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 4.2e-12 76.3 44 70.5
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 7.9e-11 72.0 59 54.2
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.0e-10 71.6 119 31.1
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 1.1e-07 61.6 127 33.1


User provided reference genes

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