Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2X7NJS Arachis hypogaea HOM05D004236 ORTHO05D004903 6.3e-114 414.1 204 100.0
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 2.6e-30 136.3 72 91.7
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 2.6e-30 136.3 72 91.7
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 4.8e-29 132.1 72 84.7
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 1.4e-28 130.6 72 86.1
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 1.4e-28 130.6 72 83.3
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 1.4e-28 130.6 72 83.3
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 3.1e-28 129.4 72 84.7
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 1.2e-27 127.5 72 80.6
arahy.Tifrunner.gnm1.ann1.YBT00D Arachis hypogaea HOM05D004236 ORTHO05D019770 2.6e-27 126.3 68 89.7
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 2.2e-26 123.2 72 81.9
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 2.2e-26 123.2 72 81.9
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 2.2e-26 123.2 72 83.3
arahy.Tifrunner.gnm1.ann1.RD0JM0 Arachis hypogaea HOM05D004236 ORTHO05D004903 2.9e-26 122.9 82 74.4
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 3.8e-26 122.5 72 80.6
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 3.8e-26 122.5 72 81.9
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 9.4e-25 117.9 72 70.8
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 1.2e-24 117.5 72 73.6
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 1.4e-23 114.0 72 70.8
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 1.4e-23 114.0 72 70.8
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 3.0e-23 112.8 72 72.2
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 3.0e-23 112.8 72 70.8
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 3.9e-23 112.5 72 70.8
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 5.2e-23 112.1 74 71.6
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 5.2e-23 112.1 72 72.2
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 6.7e-23 111.7 72 70.8
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 6.7e-23 111.7 72 70.8
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 8.8e-23 111.3 72 68.1
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 8.8e-23 111.3 73 69.9
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 8.8e-23 111.3 73 69.9
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 8.8e-23 111.3 72 73.6
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 1.1e-22 110.9 72 68.1
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 2.0e-22 110.2 72 72.2
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 3.3e-22 109.4 72 69.4
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 5.7e-22 108.6 72 69.4
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 5.7e-22 108.6 72 70.8
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 7.4e-22 108.2 72 72.2
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 9.7e-22 107.8 72 69.4
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 9.7e-22 107.8 73 67.1
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.3e-21 107.5 72 70.8
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.3e-21 107.5 72 70.8
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 1.3e-21 107.5 72 68.1
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 2.2e-21 106.7 73 69.9
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 2.8e-21 106.3 72 72.2
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 8.2e-21 104.8 73 64.4
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 8.2e-21 104.8 72 68.1
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 8.2e-21 104.8 67 73.1
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 1.1e-20 104.4 71 67.6
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 3.1e-20 102.8 72 63.9
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 3.1e-20 102.8 72 63.9
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 5.3e-20 102.1 72 63.9
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 7.0e-20 101.7 72 63.9
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 7.0e-20 101.7 72 63.9
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 9.1e-20 101.3 72 65.3
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 9.1e-20 101.3 73 64.4
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 9.1e-20 101.3 72 65.3
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.2e-19 100.9 72 68.1
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.6e-19 100.5 72 63.9
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 2.0e-19 100.1 72 68.1
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.6e-19 99.8 72 65.3
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 3.5e-19 99.4 73 60.3
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 3.5e-19 99.4 72 63.9
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 3.5e-19 99.4 73 63.0
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 5.9e-19 98.6 74 67.6
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 5.9e-19 98.6 72 65.3
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 7.7e-19 98.2 72 63.9
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 1.3e-18 97.4 72 59.7
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 1.3e-18 97.4 72 62.5
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 1.7e-18 97.1 72 61.1
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 2.2e-18 96.7 72 62.5
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 2.2e-18 96.7 73 61.6
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 2.2e-18 96.7 72 61.1
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 2.2e-18 96.7 72 65.3
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 2.2e-18 96.7 76 61.8
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 5.0e-18 95.5 72 62.5
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 6.5e-18 95.1 72 63.9
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 6.5e-18 95.1 72 61.1
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 6.5e-18 95.1 72 63.9
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 8.5e-18 94.7 72 62.5
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 1.5e-17 94.0 72 59.7
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 1.5e-17 94.0 72 58.3
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 1.5e-17 94.0 72 61.1
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 1.5e-17 94.0 72 62.5
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 1.5e-17 94.0 72 58.3
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 1.9e-17 93.6 72 59.7
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.9e-17 93.6 72 63.9
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 2.5e-17 93.2 72 58.3
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 2.5e-17 93.2 72 58.3
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 3.2e-17 92.8 82 58.5
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 3.2e-17 92.8 72 61.1
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 3.2e-17 92.8 72 61.1
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 4.2e-17 92.4 72 58.3
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 4.2e-17 92.4 72 58.3
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 7.2e-17 91.7 75 60.0
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 1.2e-16 90.9 77 58.4
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 1.6e-16 90.5 73 58.9
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 1.6e-16 90.5 72 61.1
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 2.7e-16 89.7 72 62.5
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 2.7e-16 89.7 72 55.6
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 2.7e-16 89.7 72 55.6
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 3.6e-16 89.4 72 61.1
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 6.1e-16 88.6 72 61.1
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 8.0e-16 88.2 72 59.7
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 1.8e-15 87.0 78 55.1
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 2.3e-15 86.7 74 55.4
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 2.3e-15 86.7 72 56.9
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 3.0e-15 86.3 68 64.7
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 5.2e-15 85.5 72 58.3
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 5.2e-15 85.5 72 58.3
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 5.2e-15 85.5 72 58.3
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 5.2e-15 85.5 72 58.3
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 5.2e-15 85.5 72 58.3
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 5.2e-15 85.5 72 58.3
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 6.7e-15 85.1 68 60.3
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 8.8e-15 84.7 74 56.8
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 8.8e-15 84.7 72 54.2
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 1.2e-14 84.3 72 54.2
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 1.2e-14 84.3 73 56.2
Solyc03g034415.1 Solanum lycopersicum HOM05D004236 ORTHO05D004903 1.5e-14 84.0 71 57.7
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 2.0e-14 83.6 72 54.2
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 1.7e-13 80.5 72 54.2
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 6.3e-13 78.6 75 48.0
Lsat_1_v5_gn_0_260 Lactuca sativa HOM05D004236 ORTHO05D004903 6.3e-13 78.6 93 48.4
Lsat_1_v5_gn_0_31400 Lactuca sativa HOM05D004236 ORTHO05D004903 6.3e-13 78.6 93 48.4
Lsat_1_v5_gn_3_124540 Lactuca sativa HOM05D004236 ORTHO05D004903 6.3e-13 78.6 93 48.4
Lsat_1_v5_gn_3_86660 Lactuca sativa HOM05D004236 ORTHO05D004903 6.3e-13 78.6 93 48.4
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 1.1e-12 77.8 67 59.7
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 1.8e-12 77.0 72 54.2
arahy.Tifrunner.gnm1.ann1.44HJ96 Arachis hypogaea HOM05D000256 ORTHO05D000119 5.3e-12 75.5 54 66.7
Lsat_1_v5_gn_2_36660 Lactuca sativa HOM05D004236 ORTHO05D004903 5.3e-12 75.5 67 59.7
SHI07808 Sapria himalayana HOM05D004236 ORTHO05D004903 5.3e-12 75.5 71 53.5
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 1.6e-11 73.9 72 52.8
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 2.7e-11 73.2 72 50.0
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 2.2e-10 70.1 76 46.1
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 8.5e-10 68.2 72 51.4
SEGI_28739 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 3.6e-08 62.8 72 45.8
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 8.0e-08 61.6 77 45.5
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 7.5e-06 55.1 72 38.9


User provided reference genes

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