Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 0.0e+00 1799.3 909 100.0
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 0.0e+00 1706.0 909 95.7
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 0.0e+00 1242.3 871 73.2
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 0.0e+00 1242.3 871 72.9
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 0.0e+00 1215.7 869 72.2
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 0.0e+00 1214.9 868 72.1
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 0.0e+00 1206.4 889 69.1
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 0.0e+00 1162.5 888 68.4
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 0.0e+00 1153.7 867 68.7
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 0.0e+00 1094.7 866 66.6
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 5.4e-306 1054.3 890 62.6
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 2.6e-300 1035.4 863 64.2
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 5.6e-295 1017.7 865 63.4
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 6.0e-265 917.9 874 56.2
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 2.8e-262 909.1 872 55.5
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.4e-261 906.7 873 55.4
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 9.0e-261 904.0 872 55.3
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 1.1e-255 887.1 877 55.1
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 4.3e-255 885.2 893 53.9
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 9.0e-253 877.5 892 53.4
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 5.5e-250 868.2 873 53.8
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.2e-249 867.1 891 52.6
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 8.7e-248 860.9 873 53.7
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 7.4e-247 857.8 872 52.1
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 9.7e-247 857.4 872 52.2
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.4e-245 853.6 874 53.3
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.8e-245 853.2 871 52.6
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.1e-245 852.0 871 53.0
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 6.9e-245 851.3 871 53.0
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 9.0e-245 850.9 903 52.0
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.2e-244 850.5 916 51.6
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 4.5e-244 848.6 871 52.6
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.9e-244 848.2 907 51.2
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 5.9e-244 848.2 872 52.9
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 2.7e-241 839.3 901 50.4
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.0e-236 823.2 873 51.9
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.0e-235 820.8 873 51.8
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 5.0e-235 818.5 879 51.1
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.7e-233 812.8 912 49.5
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 3.6e-233 812.4 890 49.3
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 8.8e-232 807.7 763 56.4
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.0e-231 806.6 906 48.9
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 3.3e-231 805.8 958 48.1
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 3.3e-231 805.8 874 50.2
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 2.2e-230 803.1 897 50.1
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 4.8e-230 802.0 876 50.7
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 4.1e-229 798.9 878 49.8
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 5.9e-228 795.0 827 52.0
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.0e-227 794.3 875 51.1
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.0e-227 794.3 910 48.8
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.1e-226 790.8 873 48.5
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 2.0e-223 780.0 759 55.5
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 2.0e-223 780.0 874 48.2
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 3.7e-222 775.8 872 49.8
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 6.3e-222 775.0 876 48.1
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.4e-221 773.1 890 48.9
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 3.1e-221 772.7 876 48.1
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 1.2e-220 770.8 877 48.1
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 6.5e-219 765.0 875 49.1
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 4.2e-218 762.3 968 45.6
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.3e-211 740.7 877 47.7
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.2e-209 734.2 903 46.2
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 2.1e-209 733.4 897 45.3
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 8.0e-209 731.5 900 45.8
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 5.2e-208 728.8 875 45.7
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 4.8e-206 722.2 897 45.5
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 7.0e-205 718.4 890 46.5
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 5.0e-203 712.2 895 44.6
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 8.6e-203 711.4 879 45.6
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 8.6e-203 711.4 900 44.9
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.2e-201 707.6 696 52.7
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 2.1e-201 706.8 721 52.6
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.2e-199 701.0 900 45.4
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 1.6e-196 690.6 900 44.2
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 2.0e-196 690.3 880 44.5
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 7.8e-196 688.3 925 43.4
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 4.0e-192 676.0 883 44.5
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.5e-191 674.1 883 44.8
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 2.6e-191 673.3 939 42.5
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 5.8e-191 672.2 883 44.7
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 7.5e-191 671.8 652 55.8
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 9.8e-191 671.4 883 44.3
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 9.8e-191 671.4 883 44.4
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 1.7e-190 670.6 693 50.6
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 2.9e-190 669.8 883 44.2
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 8.3e-190 668.3 875 43.9
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.1e-189 666.0 873 44.2
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.3e-187 661.0 899 43.5
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 1.5e-186 657.5 949 42.9
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.4e-184 651.0 739 47.6
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 2.4e-181 640.2 818 46.2
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.5e-180 636.3 875 43.9
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.7e-179 634.0 881 43.9
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.7e-179 634.0 876 42.2
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 6.8e-176 622.1 709 48.2
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.0e-175 620.5 889 41.3
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 2.2e-174 617.1 828 43.5
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.9e-173 614.0 879 41.4
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 1.5e-170 604.4 680 48.7
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 4.9e-166 589.3 685 47.9
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 2.9e-158 563.5 876 39.3
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.4e-157 560.5 617 49.3
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 5.4e-149 532.7 876 38.7
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.7e-145 520.0 678 44.5
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.7e-145 520.0 696 43.5
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.6e-132 478.0 915 36.3
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 2.0e-127 461.1 566 47.5
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.7e-126 458.0 823 37.4
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.1e-124 451.1 801 37.1
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 1.1e-122 445.3 630 40.6
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.5e-119 434.9 739 36.8
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 3.8e-118 430.3 874 34.9
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.0e-110 405.6 703 36.3
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.2e-109 400.6 539 41.9
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.4e-98 364.0 347 58.8
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 5.7e-98 363.2 771 34.2
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 7.0e-96 356.3 261 68.6
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.2e-94 351.3 958 29.6
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.2e-94 351.3 958 29.6
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 3.4e-90 337.4 240 70.4
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.2e-87 328.9 289 60.9
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 7.5e-82 309.7 192 81.8
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 3.2e-80 304.3 788 29.3
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 7.8e-79 299.7 585 34.4
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.3e-78 298.9 253 61.7
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 5.4e-72 276.9 192 71.4
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 5.4e-72 276.9 590 32.0
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 1.6e-71 275.4 199 66.3
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.1e-69 269.2 723 30.3
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 8.9e-67 259.6 525 33.0
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.5e-66 258.8 191 68.6
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.5e-53 214.9 370 36.2
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 8.1e-52 209.9 749 27.1
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 3.8e-49 201.1 331 37.2
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 3.2e-48 198.0 143 70.6
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 7.1e-48 196.8 260 45.4
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 3.0e-46 191.4 225 44.9
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 2.0e-42 178.7 191 50.8
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.9e-40 172.2 145 60.7
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.1e-38 164.1 205 42.4
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.5e-37 162.5 163 54.0
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 2.1e-36 158.7 108 70.4
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.4e-35 156.0 230 42.2
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 4.9e-33 147.5 168 46.4
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 6.4e-33 147.1 90 77.8
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.1e-32 146.4 91 75.8
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 3.0e-30 138.3 303 30.7
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 3.9e-30 137.9 102 73.5
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.1e-29 136.3 187 41.2
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 2.5e-29 135.2 233 36.9
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.3e-29 134.8 210 38.1
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.8e-27 129.0 84 79.8
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.6e-26 123.6 198 37.9
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 2.7e-23 115.2 203 33.0
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 5.7e-21 107.5 103 56.3
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 6.2e-20 104.0 110 46.4
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 9.0e-19 100.1 184 33.2
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 1.5e-18 99.4 181 34.8
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 3.4e-18 98.2 170 33.5
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.1e-13 83.2 50 82.0
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.5e-13 82.8 186 36.6
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 7.2e-08 63.9 107 33.6


User provided reference genes

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