Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.5e-133 479.6 244 100.0
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 4.0e-131 471.5 243 98.8
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 9.9e-106 387.1 246 79.7
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 8.4e-105 384.0 246 77.2
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 7.1e-104 380.9 246 77.2
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 2.3e-102 375.9 245 79.2
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 6.7e-102 374.4 245 77.6
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 4.5e-98 361.7 246 73.6
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.4e-96 356.7 243 75.7
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 9.3e-96 354.0 247 72.9
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 3.9e-94 348.6 244 73.0
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 5.1e-94 348.2 243 74.5
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.9e-93 346.3 247 72.1
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 3.7e-92 342.0 244 70.9
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.4e-91 340.1 244 69.7
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 4.5e-90 335.1 243 69.1
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 7.6e-90 334.3 244 70.1
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 1.0e-89 334.0 246 69.9
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 2.9e-89 332.4 245 71.0
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.8e-89 332.0 243 68.7
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.2e-87 327.0 245 70.6
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.6e-87 326.6 245 69.4
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 7.9e-87 324.3 245 68.2
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.0e-86 323.9 238 67.6
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.3e-86 323.6 238 68.1
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 1.8e-86 323.2 245 67.3
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 1.8e-86 323.2 243 66.3
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 3.9e-86 322.0 243 67.1
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 3.9e-86 322.0 243 67.5
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 3.9e-86 322.0 245 69.0
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.1e-85 320.5 243 69.1
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.3e-85 318.9 244 66.0
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 4.3e-85 318.5 245 66.9
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 5.7e-85 318.2 246 67.1
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.3e-84 317.0 254 64.2
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.6e-84 316.6 244 65.6
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 2.2e-84 316.2 246 68.3
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 2.8e-84 315.8 244 66.0
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 3.7e-84 315.5 244 66.0
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 4.8e-84 315.1 243 67.5
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 6.3e-84 314.7 245 66.5
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 1.4e-83 313.5 243 66.3
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 1.8e-83 313.2 244 65.6
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 2.4e-83 312.8 246 64.6
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 4.1e-83 312.0 243 65.0
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 5.3e-83 311.6 238 67.2
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 6.9e-83 311.2 244 65.2
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 1.5e-82 310.1 244 66.4
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.6e-82 309.3 238 66.4
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.6e-82 309.3 244 64.8
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 3.4e-82 308.9 244 65.6
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 3.4e-82 308.9 242 65.3
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.0e-81 307.4 245 65.7
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 1.3e-81 307.0 244 64.8
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 1.1e-80 303.9 249 62.7
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.5e-80 302.8 243 65.8
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 9.4e-80 300.8 244 65.6
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.2e-79 300.4 247 63.2
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.6e-79 300.1 243 62.1
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 4.6e-79 298.5 243 63.0
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 6.1e-79 298.1 243 64.2
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.9e-79 297.7 243 64.6
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.4e-78 297.0 243 63.8
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.4e-78 297.0 247 61.1
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.4e-78 297.0 238 66.0
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.0e-78 295.8 243 65.0
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 6.7e-78 294.7 296 56.1
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.1e-77 293.9 247 60.7
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.5e-77 293.5 244 61.9
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 3.3e-77 292.4 251 62.2
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 9.7e-77 290.8 238 63.9
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 2.8e-76 289.3 246 61.0
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 4.8e-76 288.5 245 61.6
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 8.2e-76 287.7 238 63.0
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 8.2e-76 287.7 244 61.5
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.1e-75 287.3 244 59.4
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.4e-75 287.0 264 58.7
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.4e-75 286.2 244 60.7
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 4.1e-75 285.4 243 62.1
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.2e-74 283.9 243 63.8
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 3.4e-74 282.3 245 58.8
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 4.5e-74 282.0 246 59.8
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 2.2e-73 279.6 238 61.8
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 5.0e-73 278.5 243 58.8
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 5.0e-73 278.5 243 58.8
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.4e-72 276.9 243 62.1
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.4e-72 276.9 243 58.4
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 2.5e-72 276.2 241 60.6
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 3.2e-72 275.8 244 61.5
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 4.2e-72 275.4 243 58.4
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 7.2e-72 274.6 246 59.8
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 7.2e-72 274.6 246 60.6
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 1.6e-71 273.5 248 58.5
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.7e-71 272.7 243 57.6
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 3.6e-71 272.3 238 59.2
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 6.1e-71 271.6 244 59.8
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.0e-70 270.8 238 60.5
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 1.4e-70 270.4 244 59.4
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 1.8e-70 270.0 244 59.0
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 1.8e-70 270.0 238 58.8
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 2.3e-70 269.6 244 56.6
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.9e-70 268.9 242 59.5
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 5.1e-70 268.5 247 58.7
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 5.1e-70 268.5 244 57.4
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 6.7e-70 268.1 243 58.0
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 6.7e-70 268.1 243 58.0
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.5e-69 266.9 237 56.1
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 2.0e-69 266.5 240 58.3
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 2.6e-69 266.2 243 57.6
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 3.3e-69 265.8 245 59.6
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.4e-69 264.6 243 58.8
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 7.4e-69 264.6 245 58.4
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 7.4e-69 264.6 249 55.0
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 9.7e-69 264.2 239 59.0
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.3e-68 263.8 238 58.0
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 1.3e-68 263.8 246 58.1
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.7e-68 263.5 250 56.4
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 6.3e-68 261.5 245 55.5
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 8.2e-68 261.2 239 54.4
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.4e-67 260.4 247 57.1
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 1.4e-67 260.4 244 55.3
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 5.3e-67 258.5 238 58.4
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 5.3e-67 258.5 239 58.6
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 9.1e-67 257.7 243 57.2
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 2.6e-66 256.1 238 54.2
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 5.9e-66 255.0 226 58.8
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 7.7e-66 254.6 244 56.1
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.7e-65 253.4 237 56.1
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 6.5e-65 251.5 204 66.2
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 4.2e-64 248.8 247 55.5
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.6e-63 246.9 243 53.1
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 4.7e-63 245.4 244 56.1
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 6.1e-63 245.0 185 70.8
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 2.3e-62 243.0 247 51.4
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 2.3e-62 243.0 248 51.6
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.3e-62 243.0 246 54.9
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 3.3e-61 239.2 247 54.3
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.7e-60 236.9 249 53.8
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.7e-60 236.9 238 51.3
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.1e-59 232.3 239 53.1
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 7.0e-59 231.5 249 53.0
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 8.5e-57 224.6 204 59.3
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 6.1e-55 218.4 240 47.5
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 6.1e-55 218.4 244 48.0
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 8.0e-55 218.0 160 72.5
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.3e-54 216.5 238 47.1
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.1e-51 207.6 299 43.8
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.5e-50 202.6 245 48.6
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.2e-48 196.1 157 64.3
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 1.2e-47 194.1 238 43.7
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 2.4e-43 179.9 239 41.8
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 3.1e-43 179.5 238 42.0
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 4.5e-42 175.6 242 40.5
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 1.4e-38 164.1 164 57.3
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.5e-37 160.6 118 71.2
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.4e-37 159.1 111 68.5
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.4e-35 152.1 108 66.7
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 1.6e-31 140.6 84 77.4
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 8.0e-31 138.3 181 47.5
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.0e-30 136.0 101 66.3
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.6e-29 133.3 176 43.2
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 1.6e-26 124.0 111 57.7
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.8e-26 121.7 75 72.0
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 9.5e-24 114.8 169 39.6
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-22 110.9 88 62.5
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 2.2e-20 103.6 64 65.6
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 1.4e-19 100.9 143 42.0
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 4.6e-18 95.9 54 68.5
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 4.0e-14 82.8 43 88.4
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 4.1e-11 72.8 111 34.2
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 3.5e-10 69.7 48 64.6
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 2.1e-07 60.5 75 53.3
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 1.1e-06 58.2 144 32.6
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 1.1e-06 58.2 102 36.3


User provided reference genes

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