Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 6.6e-102 374.0 186 100.0
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 1.2e-98 363.2 186 97.3
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 5.9e-66 254.6 183 75.4
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 9.4e-64 247.3 182 74.7
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 1.4e-62 243.4 191 69.6
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 1.4e-62 243.4 191 69.6
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 2.3e-62 242.7 184 72.3
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 5.1e-62 241.5 183 71.0
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 2.0e-61 239.6 193 72.0
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 8.2e-60 234.2 182 69.8
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 1.2e-58 230.3 190 67.9
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 5.9e-58 228.0 195 63.6
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 3.8e-57 225.3 193 65.8
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 5.0e-57 224.9 198 65.7
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.9e-56 223.0 184 64.1
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 1.6e-55 219.9 191 63.9
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 3.6e-55 218.8 184 64.1
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 4.7e-55 218.4 185 63.2
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 1.0e-54 217.2 185 65.9
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 1.0e-54 217.2 197 65.5
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 1.0e-54 217.2 184 65.8
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 3.9e-54 215.3 181 64.1
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 5.1e-54 214.9 186 65.1
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 1.1e-53 213.8 192 63.5
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 3.3e-53 212.2 183 62.3
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 5.7e-53 211.5 191 64.9
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 4.8e-52 208.4 186 61.8
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 3.1e-51 205.7 182 64.3
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 4.5e-50 201.8 185 61.1
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 5.9e-50 201.4 184 63.6
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 5.9e-50 201.4 184 63.6
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 5.9e-50 201.4 184 63.6
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 7.7e-50 201.1 191 59.7
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 1.0e-49 200.7 193 59.1
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 1.7e-49 199.9 196 61.2
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 3.8e-49 198.7 187 60.4
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 8.5e-49 197.6 181 64.1
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.4e-48 196.8 198 60.6
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 4.2e-48 195.3 181 59.1
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 1.2e-47 193.7 181 61.3
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.2e-47 193.7 187 62.6
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.2e-47 193.7 194 58.8
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.6e-47 193.4 188 60.6
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 2.7e-47 192.6 187 59.9
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 6.7e-46 188.0 187 58.8
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 8.8e-46 187.6 182 59.9
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 8.8e-46 187.6 165 60.0
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.0e-45 186.4 182 60.4
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 3.3e-45 185.7 186 58.6
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 7.4e-45 184.5 182 57.1
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 9.7e-45 184.1 193 57.0
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 9.7e-45 184.1 205 52.7
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.7e-44 183.3 181 55.2
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.7e-44 183.3 183 60.1
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 1.1e-43 180.6 182 57.7
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 1.8e-43 179.9 181 58.0
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 3.1e-43 179.1 181 57.5
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.1e-43 178.7 181 55.8
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 4.5e-42 175.3 202 51.5
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 1.0e-41 174.1 200 52.5
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 1.9e-40 169.9 183 56.3
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 5.5e-40 168.3 180 56.7
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.2e-39 167.2 181 54.1
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.6e-39 166.8 181 53.0
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 2.7e-39 166.0 203 52.7
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.6e-39 165.6 181 53.6
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.6e-39 165.6 181 53.6
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 3.6e-39 165.6 193 52.8
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 6.1e-39 164.9 199 53.3
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 8.0e-39 164.5 198 54.0
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 1.4e-38 163.7 186 53.2
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 1.8e-38 163.3 192 50.5
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.0e-38 162.5 199 53.3
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 6.7e-38 161.4 193 51.3
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 6.7e-38 161.4 183 52.5
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 8.8e-38 161.0 195 53.8
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 8.8e-38 161.0 192 54.7
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 1.2e-37 160.6 186 54.3
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 1.2e-37 160.6 186 54.3
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.2e-37 160.6 210 52.4
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 1.5e-37 160.2 192 50.5
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.0e-37 159.8 193 50.3
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 5.7e-37 158.3 192 52.1
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 5.7e-37 158.3 181 54.1
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 7.5e-37 157.9 183 54.6
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 9.7e-37 157.5 183 54.1
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 1.3e-36 157.1 181 51.4
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 1.3e-36 157.1 181 51.4
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 1.7e-36 156.8 193 51.3
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 2.8e-36 156.0 184 51.6
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.7e-36 155.6 200 53.5
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 6.3e-36 154.8 193 54.9
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 1.4e-35 153.7 187 52.9
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 1.4e-35 153.7 208 45.7
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.4e-35 153.7 194 50.5
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 1.8e-35 153.3 187 52.9
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.8e-35 153.3 203 54.7
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 2.4e-35 152.9 196 56.1
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 3.1e-35 152.5 184 51.6
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 9.1e-35 151.0 187 52.4
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 1.6e-34 150.2 180 49.4
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 2.0e-34 149.8 191 52.9
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 3.5e-34 149.1 212 49.5
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 7.7e-34 147.9 118 64.4
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.0e-33 147.5 189 53.4
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 1.3e-33 147.1 183 56.3
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 2.2e-33 146.4 195 49.2
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 5.0e-33 145.2 183 56.3
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 6.5e-33 144.8 183 55.7
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 6.5e-33 144.8 183 55.7
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 6.5e-33 144.8 183 55.7
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 1.9e-32 143.3 202 48.0
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 3.2e-32 142.5 219 50.7
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 3.2e-32 142.5 219 50.7
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 4.2e-32 142.1 201 46.3
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 5.5e-32 141.7 183 53.0
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 1.6e-31 140.2 180 48.9
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 2.1e-31 139.8 195 51.8
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 2.7e-31 139.4 181 49.7
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 3.6e-31 139.0 219 49.8
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 1.0e-30 137.5 188 47.3
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 2.3e-30 136.3 181 47.5
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 8.8e-30 134.4 195 50.3
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 8.8e-30 134.4 225 48.9
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 1.5e-29 133.7 215 49.8
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 7.5e-29 131.3 190 47.4
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 1.3e-28 130.6 211 42.7
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 1.8e-27 126.7 212 47.6
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 7.7e-26 121.3 186 42.5
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 2.5e-24 116.3 159 50.3
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 1.2e-23 114.0 80 75.0
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 3.6e-23 112.5 192 42.7
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.6e-21 106.3 179 38.0
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 1.3e-20 104.0 181 40.3
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 2.4e-19 99.8 91 60.4
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.2e-18 97.4 185 38.4
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 2.7e-18 96.3 195 37.4
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.7e-17 93.6 105 48.6
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 1.7e-17 93.6 171 42.7
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 3.6e-15 85.9 79 65.8
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 2.3e-14 83.2 190 36.3
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 4.0e-14 82.4 60 68.3
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 8.9e-14 81.3 153 35.3
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 3.9e-09 65.9 191 30.4
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 5.0e-09 65.5 174 31.0
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 6.6e-09 65.1 162 35.8
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 1.1e-08 64.3 177 30.5
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 2.5e-08 63.2 177 29.4
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 7.3e-08 61.6 190 32.1
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 1.6e-07 60.5 179 30.7
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 2.1e-07 60.1 193 29.5
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 2.1e-07 60.1 189 29.6
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 8.0e-07 58.2 177 30.5
TPR.G29474 Trifolium pratense HOM05D008031 ORTHO05D010063 1.8e-06 57.0 189 28.0
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 2.3e-06 56.6 189 30.2
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 2.3e-06 56.6 178 29.8
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 3.1e-06 56.2 183 28.4
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 3.1e-06 56.2 189 30.2
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 4.0e-06 55.8 189 30.2
unitig_88.g27793 Utricularia gibba HOM05D005099 ORTHO05D006087 8.9e-06 54.7 184 29.9
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 8.9e-06 54.7 177 29.9


User provided reference genes

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