Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2U1KM1 Arachis hypogaea HOM05D002782 ORTHO05D004868 2.2e-108 395.6 194 100.0
arahy.Tifrunner.gnm1.ann1.UWV4C8 Arachis hypogaea HOM05D002782 ORTHO05D004868 7.4e-96 354.0 176 98.3
Lj4g0000454 Lotus japonicus HOM05D002782 ORTHO05D004868 3.0e-73 278.9 184 77.7
Lalb_Chr05g0229191 Lupinus albus HOM05D002782 ORTHO05D004868 3.0e-73 278.9 187 76.5
Glyma.16G110400 Glycine max HOM05D002782 ORTHO05D004868 2.6e-72 275.8 184 78.3
Glyma.16G077100 Glycine max HOM05D002782 ORTHO05D004868 9.7e-72 273.9 184 77.7
Psat4g106920 Pisum sativum HOM05D002782 ORTHO05D004868 9.7e-72 273.9 186 75.3
Phvul.003G279000 Phaseolus vulgaris HOM05D002782 ORTHO05D004868 2.0e-69 266.2 184 77.2
Medtr8g072360 Medicago truncatula HOM05D002782 ORTHO05D004868 3.5e-69 265.4 186 72.6
Glyma.01G154700 Glycine max HOM05D002782 ORTHO05D004868 7.7e-69 264.2 184 70.7
Glyma.11G089700 Glycine max HOM05D002782 ORTHO05D004868 7.7e-69 264.2 184 71.7
TPR.G14274 Trifolium pratense HOM05D002782 ORTHO05D004868 2.2e-68 262.7 184 73.4
VMungo0251G0085 Vigna mungo HOM05D002782 ORTHO05D004868 9.4e-67 257.3 184 75.0
Medtr5g025280 Medicago truncatula HOM05D002782 ORTHO05D004868 1.6e-66 256.5 186 71.5
Lj2g0021450 Lotus japonicus HOM05D002782 ORTHO05D004868 3.6e-66 255.4 184 69.6
VMungo1215G2342 Vigna mungo HOM05D002782 ORTHO05D004868 2.3e-65 252.7 184 68.5
Duzib068G1320 Durio zibethinus HOM05D002782 ORTHO05D004868 5.2e-65 251.5 181 67.4
Duzib205G0719 Durio zibethinus HOM05D002782 ORTHO05D004868 1.2e-64 250.4 183 66.7
RcHm_v2.0_Chr6g0304431 Rosa chinensis HOM05D002782 ORTHO05D004868 2.6e-64 249.2 183 68.9
arahy.Tifrunner.gnm1.ann1.DH90GK Arachis hypogaea HOM05D002782 ORTHO05D004868 5.7e-64 248.1 184 69.6
arahy.Tifrunner.gnm1.ann1.NHUB83 Arachis hypogaea HOM05D002782 ORTHO05D004868 5.7e-64 248.1 184 69.6
COL.COLO4_10372 Corchorus olitorius HOM05D002782 ORTHO05D004868 7.5e-64 247.7 181 65.7
Lalb_Chr05g0215051 Lupinus albus HOM05D002782 ORTHO05D004868 7.5e-64 247.7 165 74.5
Phvul.002G120700 Phaseolus vulgaris HOM05D002782 ORTHO05D004868 9.8e-64 247.3 184 67.4
Ca_25033_v3 Cicer arietinum L. HOM05D002782 ORTHO05D004868 2.2e-63 246.1 181 70.7
TPR.G5250 Trifolium pratense HOM05D002782 ORTHO05D004868 2.8e-63 245.7 179 69.8
Thecc.03G318500 Theobroma cacao HOM05D002782 ORTHO05D004868 6.3e-63 244.6 181 66.3
Prupe.1G352700 Prunus persica HOM05D002782 ORTHO05D004868 1.1e-62 243.8 184 65.2
FAN27G1804 Fragaria x ananassa HOM05D002782 ORTHO05D004868 3.1e-62 242.3 184 65.8
Gohir.A12G202100 Gossypium hirsutum HOM05D002782 ORTHO05D004868 5.4e-62 241.5 180 64.4
Gohir.D12G204800 Gossypium hirsutum HOM05D002782 ORTHO05D004868 5.4e-62 241.5 180 64.4
Gorai.008G219700 Gossypium raimondii HOM05D002782 ORTHO05D004868 5.4e-62 241.5 180 64.4
Ca_22444_v3 Cicer arietinum L. HOM05D002782 ORTHO05D004868 7.0e-62 241.1 216 61.6
Ca_22451_v3 Cicer arietinum L. HOM05D002782 ORTHO05D004868 7.0e-62 241.1 216 61.6
FAN15G3251 Fragaria x ananassa HOM05D002782 ORTHO05D004868 7.0e-62 241.1 184 65.2
FAN20G2848 Fragaria x ananassa HOM05D002782 ORTHO05D004868 1.2e-61 240.4 184 65.2
GSVIVG01032759001 Vitis vinifera HOM05D002782 ORTHO05D004868 1.6e-61 240.0 182 65.4
FvH4_2g37270 Fragaria vesca HOM05D002782 ORTHO05D004868 3.5e-61 238.8 184 64.7
Atru.chr8.2635 Acer truncatum HOM05D002782 ORTHO05D004868 1.0e-60 237.3 182 64.8
MD08G1000700 Malus domestica HOM05D002782 ORTHO05D004868 3.8e-60 235.3 184 64.7
Lj1A960T72 Lonicera japonica HOM05D002782 ORTHO05D004868 4.2e-59 231.9 177 66.7
Dinv14563 Davidia involucrata HOM05D002782 ORTHO05D004868 5.5e-59 231.5 182 64.3
Potri.004G236900 Populus trichocarpa HOM05D002782 ORTHO05D004868 5.5e-59 231.5 182 63.7
Eucgr.D02556 Eucalyptus grandis HOM05D002782 ORTHO05D004868 7.2e-59 231.1 182 62.6
TWI32G0517 Tripterygium wilfordii HOM05D002782 ORTHO05D004868 7.2e-59 231.1 181 63.5
THA.LOC104811084 Tarenaya hassleriana HOM05D002782 ORTHO05D004868 1.6e-58 229.9 184 63.6
Lalb_Chr09g0324931 Lupinus albus HOM05D002782 ORTHO05D004868 2.1e-58 229.6 184 65.8
PGR031G0598 Punica granatum HOM05D002782 ORTHO05D004868 2.7e-58 229.2 182 64.3
Ciclev10011132m.g Citrus clementina HOM05D002782 ORTHO05D004868 4.7e-58 228.4 182 62.6
Manes.14G167800 Manihot esculenta HOM05D002782 ORTHO05D004868 4.7e-58 228.4 182 63.2
Aqoxy2G00804 Aquilegia oxysepala HOM05D002782 ORTHO05D004868 1.0e-57 227.3 184 62.0
Sopen05g031020 Solanum pennellii HOM05D002782 ORTHO05D004868 1.0e-57 227.3 179 64.8
Peaxi162Scf00045g02532 Petunia axillaris HOM05D002782 ORTHO05D004868 4.0e-57 225.3 179 64.2
Manes.06G009400 Manihot esculenta HOM05D002782 ORTHO05D004868 5.2e-57 224.9 182 62.6
CSS0011991 Camellia sinensis var. sinensis HOM05D002782 ORTHO05D004868 8.8e-57 224.2 183 62.3
CSS0019767 Camellia sinensis var. sinensis HOM05D002782 ORTHO05D004868 8.8e-57 224.2 183 62.3
Sabra01G0180900 Salix brachista HOM05D002782 ORTHO05D004868 1.2e-56 223.8 182 61.5
PGSC0003DMG402027172 Solanum tuberosum HOM05D002782 ORTHO05D004868 1.2e-56 223.8 179 63.7
TAR633G0972 Trochodendron aralioides HOM05D002782 ORTHO05D004868 1.2e-56 223.8 184 61.4
AL7G34910 Arabidopsis lyrata HOM05D002782 ORTHO05D004868 2.0e-56 223.0 180 64.4
CAN.G1268.10 Capsicum annuum HOM05D002782 ORTHO05D004868 2.0e-56 223.0 178 62.4
Sed0022148 Sechium edule HOM05D002782 ORTHO05D004868 2.0e-56 223.0 182 62.6
Lj8C63G18 Lonicera japonica HOM05D002782 ORTHO05D004868 3.4e-56 222.2 178 64.0
Dinv37031 Davidia involucrata HOM05D002782 ORTHO05D004868 9.8e-56 220.7 180 63.3
Sed0021806 Sechium edule HOM05D002782 ORTHO05D004868 1.7e-55 219.9 182 61.0
AT4G19180 Arabidopsis thaliana HOM05D002782 ORTHO05D004868 2.2e-55 219.5 178 64.6
ClCG07G011070 Citrullus lanatus HOM05D002782 ORTHO05D004868 2.2e-55 219.5 182 63.7
MBI03_g28295_MAGBIO Magnolia biondii HOM05D002782 ORTHO05D004868 6.3e-55 218.0 179 60.9
Thhalv10024508m.g Eutrema salsugineum HOM05D002782 ORTHO05D004868 8.3e-55 217.6 178 63.5
Hund15888 Selenicereus undatus HOM05D002782 ORTHO05D004868 8.3e-55 217.6 181 59.1
Nn5g27845 Nelumbo nucifera HOM05D002782 ORTHO05D004868 1.1e-54 217.2 182 61.5
CiPaw.12G054100 Carya illinoinensis HOM05D002782 ORTHO05D004868 1.4e-54 216.9 183 61.7
MELO3C016223.2 Cucumis melo HOM05D002782 ORTHO05D004868 1.8e-54 216.5 182 62.6
Carub.0007s2197 Capsella rubella HOM05D002782 ORTHO05D004868 2.4e-54 216.1 178 63.5
Oeu043176.1 Olea europaea HOM05D002782 ORTHO05D004868 5.4e-54 214.9 180 60.0
Actinidia33910 Actinidia chinensis HOM05D002782 ORTHO05D004868 9.2e-54 214.2 185 60.5
Aa31LG6G1880 Aethionema arabicum HOM05D002782 ORTHO05D004868 9.2e-54 214.2 179 62.0
CARHR226050 Cardamine hirsuta HOM05D002782 ORTHO05D004868 1.2e-53 213.8 181 63.5
Nn1g08490 Nelumbo nucifera HOM05D002782 ORTHO05D004868 1.2e-53 213.8 179 60.9
CsaV3_4G007170 Cucumis sativus L. HOM05D002782 ORTHO05D004868 1.6e-53 213.4 181 61.9
Psat2g146360 Pisum sativum HOM05D002782 ORTHO05D004868 2.0e-53 213.0 153 71.2
Hma1.2p1_0892F.1_g233200 Hydrangea macrophylla HOM05D002782 ORTHO05D004868 3.5e-53 212.2 186 59.7
Cc02_g06070 Coffea canephora HOM05D002782 ORTHO05D004868 4.5e-53 211.8 179 61.5
QL12p003810 Quercus lobata HOM05D002782 ORTHO05D004868 5.9e-53 211.5 138 72.5
Rhsim03G0146400 Rhododendron simsii HOM05D002782 ORTHO05D004868 7.7e-53 211.1 182 57.7
Rhsim03G0146500 Rhododendron simsii HOM05D002782 ORTHO05D004868 1.7e-52 209.9 182 57.1
C07p50290 Brassica napus HOM05D002782 ORTHO05D004868 2.3e-52 209.5 177 63.3
Cpa.g.sc90.28 Carica papaya HOM05D002782 ORTHO05D004868 2.9e-52 209.1 143 72.7
CSS0020383 Camellia sinensis var. sinensis HOM05D002782 ORTHO05D004868 3.8e-52 208.8 188 58.5
CSS0026282 Camellia sinensis var. sinensis HOM05D002782 ORTHO05D004868 3.8e-52 208.8 188 58.5
Ah.16g103860 Amaranthus hybridus HOM05D002782 ORTHO05D004868 5.0e-52 208.4 176 59.1
Nitab4.5_0001106g0100 Nicotiana tabacum HOM05D002782 ORTHO05D004868 5.0e-52 208.4 182 58.8
Sc11g0005260 Simmondsia chinensis HOM05D002782 ORTHO05D004868 6.6e-52 208.0 160 61.2
PSO339G3053 Papaver somniferum HOM05D002782 ORTHO05D004868 2.5e-51 206.1 177 59.9
PSO801G0326 Papaver somniferum HOM05D002782 ORTHO05D004868 3.3e-51 205.7 177 59.3
BcaNung03074 Brassica carinata HOM05D002782 ORTHO05D004868 4.3e-51 205.3 177 62.1
BolC7t45531H Brassica oleracea HOM05D002782 ORTHO05D004868 4.3e-51 205.3 177 62.1
HanXRQChr15g0496001 Helianthus annuus HOM05D002782 ORTHO05D004868 4.3e-51 205.3 177 63.3
EL10Ac2g04886 Beta vulgaris HOM05D002782 ORTHO05D004868 5.6e-51 204.9 185 55.7
SalBow5G4324 Salvia bowleyana HOM05D002782 ORTHO05D004868 7.3e-51 204.5 180 57.8
DCAR_011840 Daucus carota HOM05D002782 ORTHO05D004868 9.5e-51 204.1 183 57.9
Sp7g17880 Schrenkiella parvula HOM05D002782 ORTHO05D004868 9.5e-51 204.1 178 59.6
Migut.F01474 Erythranthe guttata HOM05D002782 ORTHO05D004868 1.6e-50 203.4 187 55.6
PSO765G0081 Papaver somniferum HOM05D002782 ORTHO05D004868 3.6e-50 202.2 179 58.1
MSTRG.8928 Avicennia marina HOM05D002782 ORTHO05D004868 4.7e-50 201.8 183 55.2
ECA232G3685 Erigeron canadensis HOM05D002782 ORTHO05D004868 4.7e-50 201.8 183 61.7
DCAR_024803 Daucus carota HOM05D002782 ORTHO05D004868 8.0e-50 201.1 177 57.1
Oeu023922.2 Olea europaea HOM05D002782 ORTHO05D004868 3.0e-49 199.1 179 57.5
Rhsim09G0180000 Rhododendron simsii HOM05D002782 ORTHO05D004868 4.0e-49 198.7 181 54.7
Solyc05g052490.3 Solanum lycopersicum HOM05D002782 ORTHO05D004868 4.0e-49 198.7 179 59.2
Haze_08439 Corylus avellana HOM05D002782 ORTHO05D004868 6.8e-49 198.0 222 51.4
Os10g0350500 Oryza sativa ssp. japonica HOM05D002782 ORTHO05D004868 8.9e-49 197.6 179 56.4
MSTRG.194 Avicennia marina HOM05D002782 ORTHO05D004868 2.0e-48 196.4 185 54.1
vmacro17692 Vaccinium macrocarpon HOM05D002782 ORTHO05D004868 2.6e-48 196.1 190 54.7
vmacro10005 Vaccinium macrocarpon HOM05D002782 ORTHO05D004868 3.4e-48 195.7 178 55.6
A01p11140 Brassica napus HOM05D002782 ORTHO05D004868 7.5e-48 194.5 180 58.9
BraA01t01060Z Brassica rapa HOM05D002782 ORTHO05D004868 7.5e-48 194.5 180 58.9
SGA_v2.0_scaffold145G36005 Striga asiatica HOM05D002782 ORTHO05D004868 1.3e-47 193.7 184 55.4
PSO349G0201 Papaver somniferum HOM05D002782 ORTHO05D004868 4.9e-47 191.8 160 60.0
C01p13180 Brassica napus HOM05D002782 ORTHO05D004868 6.4e-47 191.4 180 58.9
TAR623G0374 Trochodendron aralioides HOM05D002782 ORTHO05D004868 8.3e-47 191.0 142 65.5
AUR62022933 Chenopodium quinoa HOM05D002782 ORTHO05D004868 1.1e-46 190.7 180 56.1
MBI06_g01058_MAGBIO Magnolia biondii HOM05D002782 ORTHO05D004868 1.1e-46 190.7 181 54.1
Zm00001eb289880 Zea mays HOM05D002782 ORTHO05D004868 4.6e-45 185.3 177 52.5
Migut.F00640 Erythranthe guttata HOM05D002782 ORTHO05D004868 5.9e-45 184.9 184 53.3
AUR62012294 Chenopodium quinoa HOM05D002782 ORTHO05D004868 7.8e-45 184.5 176 55.1
CDE04G2957 Ceratophyllum demersum HOM05D002782 ORTHO05D004868 1.0e-44 184.1 179 52.0
CDE06G2696 Ceratophyllum demersum HOM05D002782 ORTHO05D004868 2.3e-44 183.0 182 50.5
ATR0087G006 Amborella trichopoda HOM05D002782 ORTHO05D004868 5.6e-43 178.3 188 55.3
Lsat_1_v5_gn_9_60901 Lactuca sativa HOM05D002782 ORTHO05D004868 8.0e-42 174.5 179 54.7
Sc10g0002590 Simmondsia chinensis HOM05D002782 ORTHO05D004868 8.9e-41 171.0 138 60.1
Hund13890 Selenicereus undatus HOM05D002782 ORTHO05D004868 3.4e-40 169.1 179 52.0
Actinidia00661 Actinidia chinensis HOM05D002782 ORTHO05D004868 5.8e-40 168.3 148 60.8
SalBow3G1879 Salvia bowleyana HOM05D002782 ORTHO05D004868 1.7e-39 166.8 172 52.3
SalBow3G3151 Salvia bowleyana HOM05D002782 ORTHO05D004868 1.7e-39 166.8 172 52.3
unitig_0.g250 Utricularia gibba HOM05D002782 ORTHO05D004868 1.1e-38 164.1 163 49.1
BcaC09g51432 Brassica carinata HOM05D002782 ORTHO05D004868 2.7e-37 159.5 180 52.2
HanXRQChr08g0222001 Helianthus annuus HOM05D002782 ORTHO05D004868 4.6e-37 158.7 173 50.9
Lsat_1_v5_gn_8_12920 Lactuca sativa HOM05D002782 ORTHO05D004868 2.3e-36 156.4 185 49.2
VMungo0331G1439 Vigna mungo HOM05D002782 ORTHO05D004868 4.0e-33 145.6 104 74.0
HPP92_016789 Vanilla planifolia HOM05D002782 ORTHO05D004868 2.6e-32 142.9 146 53.4
Ah.10g036270 Amaranthus hybridus HOM05D002782 ORTHO05D004868 1.6e-29 133.7 175 45.1
SEGI_18122 Sequoiadendron giganteum HOM05D002782 ORTHO05D004868 7.8e-29 131.3 177 42.9
unitig_0.g2177 Utricularia gibba HOM05D002782 ORTHO05D004868 1.7e-28 130.2 173 44.5
CDE04G0474 Ceratophyllum demersum HOM05D002782 ORTHO05D004868 1.8e-25 120.2 178 39.3
arahy.Tifrunner.gnm1.ann1.7G3YLK Arachis hypogaea HOM05D002782 ORTHO05D023272 1.5e-24 117.1 111 59.5
Mapoly0005s0253 Marchantia polymorpha HOM05D002782 ORTHO05D004868 6.0e-21 105.1 175 39.4
vmacro06951 Vaccinium macrocarpon HOM05D002782 ORTHO05D004868 1.9e-19 100.1 62 72.6
Pp3c21_9650 Physcomitrium patens HOM05D002782 ORTHO05D004868 3.3e-19 99.4 160 37.5
Pp3c21_9651 Physcomitrium patens HOM05D002782 ORTHO05D004868 3.3e-19 99.4 160 37.5
SEGI_28713 Sequoiadendron giganteum HOM05D002782 ORTHO05D004868 3.4e-16 89.4 64 60.9
SEGI_34319 Sequoiadendron giganteum HOM05D002782 ORTHO05D004868 3.4e-16 89.4 64 60.9
Pp3c25_2010 Physcomitrium patens HOM05D002782 ORTHO05D004868 7.6e-16 88.2 161 37.3
Pp3c16_8940 Physcomitrium patens HOM05D002782 ORTHO05D004868 2.2e-15 86.7 56 66.1
SMO347G0180 Selaginella moellendorffii HOM05D002782 ORTHO05D004868 2.9e-15 86.3 56 64.3
Pp3c18_13930 Physcomitrium patens HOM05D002782 ORTHO05D004868 3.5e-13 79.3 125 37.6
CBR_g22884 Chara braunii HOM05D002782 ORTHO05D004868 3.1e-09 66.2 51 56.9
Eucgr.B00247 Eucalyptus grandis HOM05D002782 ORTHO05D010298 9.0e-09 64.7 119 36.1
Cfa019167 Carpinus fangiana HOM05D002782 ORTHO05D010298 1.3e-07 60.8 94 39.4
MBI10_g44383_MAGBIO Magnolia biondii HOM05D002782 ORTHO05D010298 1.3e-07 60.8 93 35.5
Aqoxy3G02845 Aquilegia oxysepala HOM05D002782 ORTHO05D010298 1.7e-07 60.5 90 35.6
Manes.14G063500 Manihot esculenta HOM05D002782 ORTHO05D010298 2.2e-07 60.1 88 33.0
Haze_07544 Corylus avellana HOM05D002782 ORTHO05D010298 2.9e-07 59.7 94 37.2
FAN08G2772 Fragaria x ananassa HOM05D002782 ORTHO05D010298 4.9e-07 58.9 84 38.1
DCAR_026159 Daucus carota HOM05D002782 ORTHO05D010298 6.4e-07 58.5 95 35.8
Hma1.2p1_0046F.1_g026740 Hydrangea macrophylla HOM05D002782 ORTHO05D010298 6.4e-07 58.5 85 36.5
QL10p008917 Quercus lobata HOM05D002782 ORTHO05D010298 8.4e-07 58.2 87 36.8
RcHm_v2.0_Chr7g0193161 Rosa chinensis HOM05D002782 ORTHO05D010298 8.4e-07 58.2 81 35.8
GSVIVG01007701001 Vitis vinifera HOM05D002782 ORTHO05D010298 8.4e-07 58.2 110 27.3
MD06G1170700 Malus domestica HOM05D002782 ORTHO05D010298 1.1e-06 57.8 87 33.3
Lj9A446T60 Lonicera japonica HOM05D002782 ORTHO05D010298 3.2e-06 56.2 61 42.6
PSO832G1880 Papaver somniferum HOM05D002782 ORTHO05D010298 3.2e-06 56.2 44 50.0
Potri.015G079900 Populus trichocarpa HOM05D002782 ORTHO05D010298 3.2e-06 56.2 82 35.4
ECA233G2803 Erigeron canadensis HOM05D002782 ORTHO05D004868 5.4e-06 55.5 29 79.3
FAN13G0516 Fragaria x ananassa HOM05D002782 ORTHO05D010298 5.4e-06 55.5 81 34.6
Nitab4.5_0000058g0140 Nicotiana tabacum HOM05D002782 ORTHO05D004868 5.4e-06 55.5 137 29.9
Prupe.5G170300 Prunus persica HOM05D002782 ORTHO05D010298 5.4e-06 55.5 88 39.8
CiPaw.12G028600 Carya illinoinensis HOM05D002782 ORTHO05D010298 7.1e-06 55.1 47 48.9
AUR62028763 Chenopodium quinoa HOM05D002782 ORTHO05D010298 9.3e-06 54.7 79 35.4


User provided reference genes

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