Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 2378.2 1213 100.0
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 2360.5 1213 99.5
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 2050.4 1214 87.3
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 2046.9 1236 86.1
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 2033.1 1236 85.8
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 2022.7 1212 86.3
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 2016.9 1213 84.8
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 2014.6 1206 87.0
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 2013.4 1209 85.9
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 2003.0 1207 86.3
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1955.6 1271 80.5
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1921.7 1209 82.1
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1918.7 1210 81.6
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1907.1 1207 81.0
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1903.6 1241 79.9
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1903.6 1207 80.9
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1892.9 1207 81.2
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1889.4 1208 80.5
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1884.8 1208 80.3
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1877.8 1212 80.9
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1874.8 1218 79.6
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1873.2 1209 80.0
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1868.6 1208 79.7
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1865.5 1208 79.7
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1864.0 1218 79.5
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1862.0 1209 79.2
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1850.5 1208 79.3
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1847.0 1111 85.5
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1846.6 1252 77.2
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1845.5 1256 77.0
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1844.7 1256 77.0
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1844.3 1207 78.7
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1841.2 1208 78.1
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1839.7 1256 77.0
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1835.8 1208 78.6
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1835.1 1205 78.1
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1831.6 1212 78.3
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1831.2 1208 78.7
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1826.6 1239 76.3
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1825.1 1208 77.9
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1820.8 1209 77.7
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1816.6 1156 81.2
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1814.3 1156 81.4
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1812.7 1156 81.3
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1810.4 1156 81.4
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1806.6 1209 77.5
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1796.6 1208 76.7
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1793.1 1207 77.8
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1771.5 1214 76.0
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1771.1 1209 76.7
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1771.1 1156 79.4
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1770.0 1213 76.5
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1768.1 1210 76.0
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1766.5 1265 73.4
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1760.3 1209 77.0
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1751.9 1211 75.3
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1751.5 1208 75.2
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1749.2 1208 75.3
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1742.2 1248 74.5
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1738.4 1213 74.4
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1736.1 1208 74.9
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1735.3 1248 73.9
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1734.5 1210 74.9
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1732.6 1208 74.5
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1731.1 1156 78.5
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1729.5 1208 74.4
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1728.4 1156 78.5
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1725.7 1195 75.0
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1723.4 1207 74.2
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1722.6 1206 73.8
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1716.4 1210 74.1
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1710.7 1220 73.9
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1706.8 1112 78.5
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1705.6 1239 73.1
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1701.8 1211 73.2
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1699.1 1207 72.9
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1696.4 1230 73.3
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1696.0 1212 73.5
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1694.5 1208 73.8
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1693.7 1208 73.6
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1693.3 1208 73.5
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1692.9 1244 71.9
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1690.2 1212 73.0
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1688.7 1208 73.5
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1688.7 1209 73.6
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1687.5 1213 72.1
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1685.6 1208 73.6
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1685.6 1212 72.9
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1685.2 1268 70.4
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1685.2 1213 73.5
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1684.8 1216 73.7
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1684.8 1219 73.7
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1683.7 1212 73.9
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1683.7 1226 72.6
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1677.1 1212 72.2
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1674.8 1215 73.1
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1673.3 1213 73.2
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1671.0 1207 73.0
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1671.0 1210 73.6
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1669.1 1211 72.7
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1663.3 1161 74.5
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1651.7 1210 73.2
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1650.2 1219 71.8
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1646.7 1216 72.3
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1641.3 1216 72.5
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1638.2 1214 71.6
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1622.8 1217 70.7
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1620.1 1214 70.3
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1604.3 1212 71.7
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1598.6 1233 70.5
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1598.6 1223 70.8
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1597.8 1160 71.5
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1569.7 1211 68.3
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1567.7 1214 68.7
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1565.8 1219 68.2
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1540.4 1217 67.1
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1539.6 1215 67.1
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1526.9 1122 72.1
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1516.9 971 79.5
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1486.5 971 78.6
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1481.5 994 77.2
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1476.1 1216 65.8
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1434.1 1047 73.8
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1426.8 1075 70.6
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1341.6 970 73.1
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1290.0 972 71.6
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1286.9 900 74.3
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1276.5 1003 69.0
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1273.8 820 81.5
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1236.5 994 68.2
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1230.7 1211 58.2
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1186.8 827 75.1
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1186.0 831 75.1
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1161.4 832 73.4
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 8.8e-304 1047.3 736 75.3
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 6.3e-302 1041.2 1205 52.8
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 2.0e-279 966.5 1211 47.2
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 9.8e-279 964.1 1244 46.1
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 4.5e-276 955.3 563 85.8
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 1.9e-266 923.3 604 78.1
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.2e-252 877.5 735 65.7
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.6e-191 673.7 455 74.9
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 2.7e-175 620.5 383 82.8
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 5.8e-146 523.1 641 50.4
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.9e-136 491.5 924 39.4
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 4.1e-136 490.3 330 74.8
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 2.6e-130 471.1 330 73.3
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 5.8e-130 469.9 330 73.3
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 8.4e-121 439.5 825 36.5
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.1e-115 422.5 297 75.4
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 7.4e-109 399.8 1343 28.4
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 3.8e-89 334.3 512 42.4
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 7.2e-88 330.1 252 67.5
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 2.4e-83 315.1 282 64.5
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 5.3e-83 313.9 215 73.0
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 3.9e-78 297.7 217 71.4
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 7.4e-77 293.5 182 80.8
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.4e-72 279.3 260 61.9
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 1.0e-70 273.1 199 68.8
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.3e-65 256.1 144 88.2
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 3.8e-65 254.6 198 70.2
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 1.9e-64 252.3 181 71.8
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 2.2e-60 238.8 178 70.2
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 3.1e-51 208.4 132 81.1
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 2.5e-48 198.7 118 87.3
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 6.8e-46 190.7 125 76.0
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 4.4e-37 161.4 92 90.2
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.5e-32 146.4 86 84.9
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 5.6e-32 144.4 91 79.1
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 5.6e-32 144.4 91 79.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 7.3e-24 117.5 78 78.2
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 8.3e-20 104.0 59 84.7
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 7.8e-18 97.4 65 76.9
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 3.3e-16 92.0 69 62.3
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 3.6e-15 88.6 108 50.9
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 6.2e-15 87.8 96 43.8
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.4e-14 86.7 81 53.1
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 2.4e-06 59.3 59 54.2
Lsat_1_v5_gn_6_60101 Lactuca sativa HOM05D003952 ORTHO05D230796 5.2e-06 58.2 32 75.0


User provided reference genes

Program Settings