Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2QW3Q9 Arachis hypogaea HOM05D000306 ORTHO05D007657 0.0e+00 1244.2 613 100.0
VMungo1215G2115 Vigna mungo HOM05D000306 ORTHO05D007657 8.7e-300 1033.1 588 85.5
Lj4g0000904 Lotus japonicus HOM05D000306 ORTHO05D007657 8.4e-295 1016.5 597 84.6
Glyma.17G065600 Glycine max HOM05D000306 ORTHO05D007657 1.6e-293 1012.3 595 83.5
Lalb_Chr07g0180291 Lupinus albus HOM05D000306 ORTHO05D007657 1.3e-287 992.6 580 84.5
Phvul.003G148000 Phaseolus vulgaris HOM05D000306 ORTHO05D007657 2.2e-287 991.9 588 82.7
QL02p097271 Quercus lobata HOM05D000306 ORTHO05D007657 2.2e-287 991.9 606 80.9
Ca_21206_v3 Cicer arietinum L. HOM05D000306 ORTHO05D007657 2.9e-287 991.5 588 83.5
Medtr4g128640 Medicago truncatula HOM05D000306 ORTHO05D007657 1.4e-286 989.2 586 83.1
Sabra18G0081600 Salix brachista HOM05D000306 ORTHO05D007657 1.0e-284 983.0 627 77.0
CiPaw.07G190000 Carya illinoinensis HOM05D000306 ORTHO05D007657 1.8e-284 982.2 619 80.0
Manes.06G026700 Manihot esculenta HOM05D000306 ORTHO05D007657 8.7e-284 979.9 593 80.4
Potri.018G095700 Populus trichocarpa HOM05D000306 ORTHO05D007657 5.3e-281 970.7 591 79.9
Hma1.2p1_3301F.1_g335020 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 2.0e-280 968.8 583 81.6
Cpa.g.sc95.65 Carica papaya HOM05D000306 ORTHO05D007657 4.9e-279 964.1 600 79.8
FvH4_4g09080 Fragaria vesca HOM05D000306 ORTHO05D007657 4.9e-279 964.1 595 80.2
GSVIVG01029150001 Vitis vinifera HOM05D000306 ORTHO05D007657 4.9e-279 964.1 588 80.3
PGR142G2969 Punica granatum HOM05D000306 ORTHO05D007657 7.1e-278 960.3 594 79.3
Gorai.009G006500 Gossypium raimondii HOM05D000306 ORTHO05D007657 2.7e-277 958.4 599 79.0
Dinv42746 Davidia involucrata HOM05D000306 ORTHO05D007657 4.6e-277 957.6 604 79.0
Dinv43355 Davidia involucrata HOM05D000306 ORTHO05D007657 4.6e-277 957.6 604 79.0
Carub.0007s1029 Capsella rubella HOM05D000306 ORTHO05D007657 6.0e-277 957.2 588 78.9
Oeu042129.1 Olea europaea HOM05D000306 ORTHO05D007657 1.0e-276 956.4 597 78.9
CsaV3_2G008000 Cucumis sativus L. HOM05D000306 ORTHO05D007657 1.3e-276 956.1 611 76.9
FAN22G1929 Fragaria x ananassa HOM05D000306 ORTHO05D007657 5.1e-276 954.1 614 77.4
Prupe.1G089400 Prunus persica HOM05D000306 ORTHO05D007657 6.7e-276 953.7 595 79.2
THA.LOC104803506 Tarenaya hassleriana HOM05D000306 ORTHO05D007657 8.7e-276 953.4 579 80.1
C07p57810 Brassica napus HOM05D000306 ORTHO05D007657 1.9e-275 952.2 595 79.0
BraA03t15029Z Brassica rapa HOM05D000306 ORTHO05D007657 1.9e-275 952.2 595 78.8
AL7G21840 Arabidopsis lyrata HOM05D000306 ORTHO05D007657 2.5e-275 951.8 590 78.3
A03p59750 Brassica napus HOM05D000306 ORTHO05D007657 3.3e-275 951.4 595 78.7
Thhalv10024769m.g Eutrema salsugineum HOM05D000306 ORTHO05D007657 3.3e-275 951.4 590 78.6
Aqoxy7G03118 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 5.7e-275 950.7 599 78.6
Eucgr.C00188 Eucalyptus grandis HOM05D000306 ORTHO05D007657 5.7e-275 950.7 590 79.7
BolC7t46241H Brassica oleracea HOM05D000306 ORTHO05D007657 7.4e-275 950.3 595 78.8
Gohir.D05G006400 Gossypium hirsutum HOM05D000306 ORTHO05D007657 4.8e-274 947.6 599 78.6
Sp7g28180 Schrenkiella parvula HOM05D000306 ORTHO05D007657 3.1e-273 944.9 590 77.6
CSS0004024 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 9.0e-273 943.3 588 79.4
Actinidia17107 Actinidia chinensis HOM05D000306 ORTHO05D007657 1.2e-272 943.0 593 78.8
PSO063G6265 Papaver somniferum HOM05D000306 ORTHO05D007657 1.5e-272 942.6 593 78.4
Sed0007717 Sechium edule HOM05D000306 ORTHO05D007657 2.0e-272 942.2 590 78.3
ClCG11G012530 Citrullus lanatus HOM05D000306 ORTHO05D007657 2.6e-272 941.8 644 73.4
PSO782G2546 Papaver somniferum HOM05D000306 ORTHO05D007657 2.6e-272 941.8 593 78.2
MD13G1267100 Malus domestica HOM05D000306 ORTHO05D007657 1.0e-271 939.9 580 80.9
vmacro13107 Vaccinium macrocarpon HOM05D000306 ORTHO05D007657 5.0e-271 937.6 710 69.2
CAN.G584.11 Capsicum annuum HOM05D000306 ORTHO05D007657 1.4e-270 936.0 605 74.5
FAN12G4153 Fragaria x ananassa HOM05D000306 ORTHO05D007657 1.9e-270 935.6 656 72.7
Solyc07g006780.3 Solanum lycopersicum HOM05D000306 ORTHO05D007657 3.2e-270 934.9 605 74.7
Haze_22120 Corylus avellana HOM05D000306 ORTHO05D007657 4.2e-270 934.5 638 76.0
Sopen07g002880 Solanum pennellii HOM05D000306 ORTHO05D007657 1.6e-269 932.6 605 74.5
Glyma.13G094600 Glycine max HOM05D000306 ORTHO05D007657 6.1e-269 930.6 550 82.4
PGSC0003DMG400018753 Solanum tuberosum HOM05D000306 ORTHO05D007657 1.3e-268 929.5 605 74.7
Nn2g12665 Nelumbo nucifera HOM05D000306 ORTHO05D007657 6.7e-268 927.2 580 77.8
Nitab4.5_0000937g0030 Nicotiana tabacum HOM05D000306 ORTHO05D007657 1.9e-267 925.6 575 77.2
Zm00001eb069070 Zea mays HOM05D000306 ORTHO05D007657 7.4e-267 923.7 576 77.8
Ciclev10007754m.g Citrus clementina HOM05D000306 ORTHO05D007657 2.2e-266 922.2 592 77.0
TWI34G1080 Tripterygium wilfordii HOM05D000306 ORTHO05D007657 2.2e-266 922.2 593 77.2
Cc06_g13490 Coffea canephora HOM05D000306 ORTHO05D007657 2.8e-266 921.8 579 77.9
Rhsim01G0007000 Rhododendron simsii HOM05D000306 ORTHO05D007657 6.3e-266 920.6 622 74.9
BcaNung00538 Brassica carinata HOM05D000306 ORTHO05D007657 1.4e-265 919.5 591 77.5
CANSAT11G0744 Cannabis sativa HOM05D000306 ORTHO05D007657 1.4e-265 919.5 595 76.3
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 3.1e-265 918.3 604 74.7
Migut.J01462 Erythranthe guttata HOM05D000306 ORTHO05D007657 5.3e-265 917.5 602 76.1
HanXRQChr03g0068931 Helianthus annuus HOM05D000306 ORTHO05D007657 6.9e-265 917.1 599 75.5
Lsat_1_v5_gn_7_54281 Lactuca sativa HOM05D000306 ORTHO05D007657 7.7e-264 913.7 584 77.6
RcHm_v2.0_Chr4g0403081 Rosa chinensis HOM05D000306 ORTHO05D007657 5.5e-262 907.5 597 76.2
Peaxi162Scf00050g00633 Petunia axillaris HOM05D000306 ORTHO05D007657 4.6e-261 904.4 603 73.8
EL10Ac8g18267 Beta vulgaris HOM05D000306 ORTHO05D007657 1.4e-260 902.9 595 74.5
HPP92_013461 Vanilla planifolia HOM05D000306 ORTHO05D007657 1.8e-260 902.5 594 74.6
ATR0580G308 Amborella trichopoda HOM05D000306 ORTHO05D007657 6.7e-260 900.6 594 74.7
Sc14g0001220 Simmondsia chinensis HOM05D000306 ORTHO05D007657 1.3e-258 896.3 559 78.5
Hund00645 Selenicereus undatus HOM05D000306 ORTHO05D007657 5.3e-257 891.0 673 66.4
Gohir.A05G005700 Gossypium hirsutum HOM05D000306 ORTHO05D007657 6.9e-257 890.6 559 78.4
Nitab4.5_0000244g0290 Nicotiana tabacum HOM05D000306 ORTHO05D007657 1.2e-256 889.8 599 73.5
FAN17G2452 Fragaria x ananassa HOM05D000306 ORTHO05D007657 3.4e-256 888.3 602 74.1
Cfa013520 Carpinus fangiana HOM05D000306 ORTHO05D007657 2.2e-255 885.6 628 73.6
MBI16_g41815_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D007657 3.8e-255 884.8 599 74.6
Hma1.2p1_1423F.1_g282590 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 3.6e-253 878.2 585 75.6
CDE04G1293 Ceratophyllum demersum HOM05D000306 ORTHO05D007657 6.7e-252 874.0 586 73.0
Duzib150G0020 Durio zibethinus HOM05D000306 ORTHO05D007657 6.7e-252 874.0 596 75.0
AUR62040301 Chenopodium quinoa HOM05D000306 ORTHO05D007657 1.3e-250 869.8 602 72.3
AUR62039995 Chenopodium quinoa HOM05D000306 ORTHO05D007657 8.2e-250 867.1 609 70.8
TPR.G5313 Trifolium pratense HOM05D000306 ORTHO05D007657 2.6e-248 862.1 498 84.1
Aa31LG2G20220 Aethionema arabicum HOM05D000306 ORTHO05D007657 3.9e-244 848.2 556 73.7
Atru.chr7.723 Acer truncatum HOM05D000306 ORTHO05D007657 8.8e-244 847.0 523 79.9
Psat4g012000 Pisum sativum HOM05D000306 ORTHO05D007657 4.0e-236 821.6 479 83.5
Mapoly0003s0282 Marchantia polymorpha HOM05D000306 ORTHO05D007657 3.4e-235 818.5 595 65.7
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 4.4e-235 818.1 634 66.2
Pp3c23_15560 Physcomitrium patens HOM05D000306 ORTHO05D007657 2.8e-234 815.5 581 67.8
Thecc.09G168500 Theobroma cacao HOM05D000306 ORTHO05D007657 2.8e-234 815.5 469 84.9
TAR383G0632 Trochodendron aralioides HOM05D000306 ORTHO05D007657 9.4e-230 800.4 501 78.6
AT4G30310 Arabidopsis thaliana HOM05D000306 ORTHO05D007657 4.0e-228 795.0 469 80.6
DCAR_020115 Daucus carota HOM05D000306 ORTHO05D007657 2.3e-204 716.1 447 78.5
SGA_v2.0_scaffold69G23280 Striga asiatica HOM05D000306 ORTHO05D007657 4.0e-204 715.3 485 73.2
Lj9A688T83 Lonicera japonica HOM05D000306 ORTHO05D007657 3.2e-201 705.7 472 73.5
CARHR238220 Cardamine hirsuta HOM05D000306 ORTHO05D007657 8.6e-191 671.0 406 79.1
AagrBONN_evm.TU.Sc2ySwM_117.626 Anthoceros agrestis HOM05D000306 ORTHO05D007657 4.0e-188 662.1 538 60.8
Hma1.2p1_0342F.1_g130620 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 6.8e-188 661.4 607 60.3
Hund00646 Selenicereus undatus HOM05D000306 ORTHO05D007657 9.9e-179 630.9 608 56.2
SMO239G0169 Selaginella moellendorffii HOM05D000306 ORTHO05D007657 1.7e-162 577.0 459 62.1
Os02g0177900 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D007657 3.9e-159 565.8 358 76.8
RcHm_v2.0_Chr4g0405011 Rosa chinensis HOM05D000306 ORTHO05D007657 7.2e-153 545.0 365 73.4
MELO3C004085.2 Cucumis melo HOM05D000306 ORTHO05D007657 1.6e-144 517.3 591 50.3
Nn8g40502 Nelumbo nucifera HOM05D000306 ORTHO05D007657 6.7e-143 511.9 319 79.0
SEGI_13713 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 2.7e-136 490.0 317 71.3
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 2.2e-122 443.7 569 43.2
Aqoxy3G01085 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 4.7e-120 436.0 272 77.9
Nn2g14416 Nelumbo nucifera HOM05D000306 ORTHO05D007657 5.0e-114 416.0 242 82.6
CSS0008880 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 2.0e-107 394.0 240 79.6
SHI02941 Sapria himalayana HOM05D000306 ORTHO05D007657 3.8e-106 389.8 295 67.5
Cfa026537 Carpinus fangiana HOM05D000306 ORTHO05D007657 8.9e-95 352.1 623 34.5
Aqoxy1G02891 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.3e-79 300.8 226 68.1
Aqoxy3G01524 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 6.4e-77 292.7 180 78.9
Lj9A687T77 Lonicera japonica HOM05D000306 ORTHO05D007657 1.1e-55 222.2 146 76.0
arahy.Tifrunner.gnm1.ann1.ID2I7H Arachis hypogaea HOM05D000306 ORTHO05D007657 4.0e-55 220.3 131 87.0
Aqoxy1G03516 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.2e-53 214.5 196 62.8
MELO3C000682.2 Cucumis melo HOM05D000306 ORTHO05D007657 1.9e-52 211.5 136 74.3
SEGI_25583 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 1.2e-43 182.2 137 66.4
HanXRQChr09g0255811 Helianthus annuus HOM05D000306 ORTHO05D007657 2.1e-43 181.4 128 72.7
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 3.9e-42 177.2 566 27.9
Aqoxy3G01525 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 4.1e-39 167.2 88 85.2
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 7.6e-38 162.9 565 26.4
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 1.0e-34 152.5 543 28.7
MELO3C028573.2 Cucumis melo HOM05D000306 ORTHO05D007657 4.8e-32 143.7 104 63.5
arahy.Tifrunner.gnm1.ann1.MK7H36 Arachis hypogaea HOM05D000306 ORTHO05D007657 7.9e-27 126.3 64 87.5
QL02p086401 Quercus lobata HOM05D000306 ORTHO05D007657 1.3e-24 119.0 86 72.1
SEGI_34135 Sequoiadendron giganteum HOM05D000306 ORTHO05D030075 4.8e-24 117.1 69 81.2
QL02p097096 Quercus lobata HOM05D000306 ORTHO05D007657 3.1e-23 114.4 86 70.9
DCAR_020114 Daucus carota HOM05D000306 ORTHO05D007657 1.6e-19 102.1 79 68.4
CAN.G790.37 Capsicum annuum HOM05D000306 ORTHO05D007657 9.7e-17 92.8 53 79.2
RcHm_v2.0_Chr4g0405021 Rosa chinensis HOM05D000306 ORTHO05D030075 9.7e-17 92.8 59 78.0
QL02p097130 Quercus lobata HOM05D000306 ORTHO05D007657 4.8e-16 90.5 65 75.4
TPR.G20440 Trifolium pratense HOM05D000306 ORTHO05D050985 6.5e-13 80.1 41 92.7
MD07G1169000 Malus domestica HOM05D000306 ORTHO05D030075 1.1e-12 79.3 56 78.6
arahy.Tifrunner.gnm1.ann1.QZT5UT Arachis hypogaea HOM05D000200 ORTHO05D010534 1.5e-12 79.0 53 79.2
TPR.G18960 Trifolium pratense HOM05D000306 ORTHO05D007657 1.9e-12 78.6 39 97.4
DCAR_025524 Daucus carota HOM05D003206 ORTHO05D005207 1.3e-08 65.9 544 20.6
SMO271G0060 Selaginella moellendorffii HOM05D003206 ORTHO05D005207 2.2e-08 65.1 563 20.6
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 1.4e-07 62.4 553 20.8
SEGI_29302 Sequoiadendron giganteum HOM05D000306 ORTHO05D050985 1.4e-07 62.4 41 68.3
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 1.8e-07 62.0 575 20.9
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 3.1e-07 61.2 536 21.3
Pp3c5_10000 Physcomitrium patens HOM05D003206 ORTHO05D005207 3.1e-07 61.2 441 20.6
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 9.1e-07 59.7 550 21.3
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 1.6e-06 58.9 541 19.6
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 3.5e-06 57.8 159 28.3
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 3.5e-06 57.8 552 19.6
QL02p097186 Quercus lobata HOM05D000306 ORTHO05D030075 3.5e-06 57.8 41 70.7
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 5.9e-06 57.0 433 21.2
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 5.9e-06 57.0 572 19.8
AUR62011496 Chenopodium quinoa HOM05D003206 ORTHO05D005207 7.7e-06 56.6 547 20.5


User provided reference genes

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