Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2P60TQ Arachis hypogaea HOM05D002674 ORTHO05D007700 3.3e-106 388.7 236 100.0
arahy.Tifrunner.gnm1.ann1.YN8C8B Arachis hypogaea HOM05D002674 ORTHO05D007700 1.8e-88 329.7 230 89.6
Glyma.02G018300 Glycine max HOM05D002674 ORTHO05D007700 2.8e-65 252.7 244 62.7
Phvul.007G146100 Phaseolus vulgaris HOM05D002674 ORTHO05D007700 1.3e-62 243.8 240 62.9
Glyma.10G018600 Glycine max HOM05D002674 ORTHO05D007700 3.2e-61 239.2 235 65.5
VMungo0720G0138 Vigna mungo HOM05D002674 ORTHO05D007700 9.4e-61 237.7 233 65.7
COL.COLO4_23350 Corchorus olitorius HOM05D002674 ORTHO05D007700 6.1e-60 235.0 243 58.8
Psat6g166040 Pisum sativum HOM05D002674 ORTHO05D007700 2.6e-58 229.6 238 58.8
Duzib138G1545 Durio zibethinus HOM05D002674 ORTHO05D007700 7.5e-58 228.0 244 58.2
Lj5g0010238 Lotus japonicus HOM05D002674 ORTHO05D007700 1.7e-57 226.9 257 57.6
Ca_10339_v3 Cicer arietinum L. HOM05D002674 ORTHO05D007700 1.4e-56 223.8 244 56.6
Gohir.A08G075900 Gossypium hirsutum HOM05D002674 ORTHO05D007700 1.4e-56 223.8 244 57.0
Gorai.004G089800 Gossypium raimondii HOM05D002674 ORTHO05D007700 1.8e-56 223.4 244 57.0
Thecc.01G299900 Theobroma cacao HOM05D002674 ORTHO05D007700 2.4e-56 223.0 245 58.4
Gohir.D08G085300 Gossypium hirsutum HOM05D002674 ORTHO05D007700 4.1e-56 222.2 244 56.6
Medtr1g088580 Medicago truncatula HOM05D002674 ORTHO05D007700 9.1e-56 221.1 237 56.5
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 7.7e-55 218.0 246 55.3
Atru.chr5.1151 Acer truncatum HOM05D002674 ORTHO05D007700 1.0e-54 217.6 250 56.4
Ciclev10021537m.g Citrus clementina HOM05D002674 ORTHO05D007700 6.5e-54 214.9 266 54.9
FAN27G2781 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.1e-53 214.2 246 55.3
Lj1A25T5 Lonicera japonica HOM05D002674 ORTHO05D007700 4.2e-53 212.2 247 54.3
Prupe.8G261000 Prunus persica HOM05D002674 ORTHO05D007700 7.2e-53 211.5 258 53.5
CiPaw.07G108400 Carya illinoinensis HOM05D002674 ORTHO05D007700 2.1e-52 209.9 234 57.7
TPR.G34010 Trifolium pratense HOM05D002674 ORTHO05D007700 2.7e-52 209.5 243 53.9
Lalb_Chr06g0163511 Lupinus albus HOM05D002674 ORTHO05D007700 2.3e-51 206.5 237 65.4
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 3.0e-51 206.1 260 52.7
MD03G1287800 Malus domestica HOM05D002674 ORTHO05D007700 5.2e-51 205.3 252 52.0
CANSAT25G1821 Cannabis sativa HOM05D002674 ORTHO05D007700 1.5e-50 203.8 254 52.4
TWI23G1032 Tripterygium wilfordii HOM05D002674 ORTHO05D007700 2.6e-50 203.0 248 54.4
TAR365G1234 Trochodendron aralioides HOM05D002674 ORTHO05D007700 2.6e-50 203.0 258 51.6
QL12p028514 Quercus lobata HOM05D002674 ORTHO05D007700 4.4e-50 202.2 265 52.8
CsaV3_4G000780 Cucumis sativus L. HOM05D002674 ORTHO05D007700 5.7e-50 201.8 255 51.4
ClCG10G010900 Citrullus lanatus HOM05D002674 ORTHO05D007700 9.8e-50 201.1 254 51.6
MELO3C017958.2 Cucumis melo HOM05D002674 ORTHO05D007700 9.8e-50 201.1 255 51.4
Actinidia24347 Actinidia chinensis HOM05D002674 ORTHO05D007700 4.8e-49 198.7 253 54.5
MD11G1310500 Malus domestica HOM05D002674 ORTHO05D007700 3.1e-48 196.1 251 53.0
Potri.014G129500 Populus trichocarpa HOM05D002674 ORTHO05D007700 2.7e-47 193.0 254 53.5
Sabra14G0096100 Salix brachista HOM05D002674 ORTHO05D007700 2.9e-46 189.5 250 52.0
Manes.01G218600 Manihot esculenta HOM05D002674 ORTHO05D007700 3.8e-46 189.1 249 56.2
FAN20G3185 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.5e-45 187.2 246 52.8
AT4G02425 Arabidopsis thaliana HOM05D002674 ORTHO05D007700 1.9e-45 186.8 249 50.2
FAN24G1157 Fragaria x ananassa HOM05D002674 ORTHO05D007700 2.5e-45 186.4 249 53.0
Potri.002G204700 Populus trichocarpa HOM05D002674 ORTHO05D007700 3.2e-45 186.0 250 51.6
FAN15G1012 Fragaria x ananassa HOM05D002674 ORTHO05D007700 4.2e-45 185.7 246 52.8
Aqoxy5G00752 Aquilegia oxysepala HOM05D002674 ORTHO05D007700 5.5e-45 185.3 264 49.6
Carub.0006s3472 Capsella rubella HOM05D002674 ORTHO05D007700 2.7e-44 183.0 249 50.6
FvH4_2g25690 Fragaria vesca HOM05D002674 ORTHO05D007700 3.6e-44 182.6 249 52.6
Eucgr.K03478 Eucalyptus grandis HOM05D002674 ORTHO05D007700 4.7e-44 182.2 253 52.6
HPP92_025205 Vanilla planifolia HOM05D002674 ORTHO05D007700 1.4e-43 180.6 241 49.8
C02p38980 Brassica napus HOM05D002674 ORTHO05D007700 1.8e-43 180.3 244 50.8
BolC2t09909H Brassica oleracea HOM05D002674 ORTHO05D007700 1.8e-43 180.3 244 50.8
Migut.D00215 Erythranthe guttata HOM05D002674 ORTHO05D007700 4.0e-43 179.1 234 50.4
RcHm_v2.0_Chr6g0293961 Rosa chinensis HOM05D002674 ORTHO05D007700 5.2e-43 178.7 247 51.0
BcaC03g16124 Brassica carinata HOM05D002674 ORTHO05D007700 6.8e-43 178.3 245 50.2
Thhalv10028893m.g Eutrema salsugineum HOM05D002674 ORTHO05D007700 6.8e-43 178.3 247 51.4
Sabra02G0154700 Salix brachista HOM05D002674 ORTHO05D008110 8.8e-43 177.9 235 53.2
Rhsim01G0243300 Rhododendron simsii HOM05D002674 ORTHO05D007700 1.2e-42 177.6 262 50.0
Sp6g02330 Schrenkiella parvula HOM05D002674 ORTHO05D007700 1.2e-42 177.6 246 50.4
MBI19_g25354_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D007700 1.5e-42 177.2 239 53.1
THA.LOC104815928 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 2.0e-42 176.8 253 52.6
A02p24720 Brassica napus HOM05D002674 ORTHO05D007700 2.6e-42 176.4 240 50.8
Ah.15g093240 Amaranthus hybridus HOM05D002674 ORTHO05D007700 3.4e-42 176.0 273 54.2
AL6G50650 Arabidopsis lyrata HOM05D002674 ORTHO05D007700 3.4e-42 176.0 235 51.1
CSS0049735 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 3.4e-42 176.0 243 51.9
Cfa005916 Carpinus fangiana HOM05D002674 ORTHO05D007700 3.4e-42 176.0 253 49.4
BraA02t07459Z Brassica rapa HOM05D002674 ORTHO05D007700 7.5e-42 174.9 243 50.2
PSO832G4034 Papaver somniferum HOM05D002674 ORTHO05D007700 7.5e-42 174.9 240 52.5
Nitab4.5_0002470g0100 Nicotiana tabacum HOM05D002674 ORTHO05D007700 9.8e-42 174.5 250 48.0
CDE11G0633 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 1.3e-41 174.1 242 47.9
CARHR250690 Cardamine hirsuta HOM05D002674 ORTHO05D007700 3.7e-41 172.6 254 49.2
PGSC0003DMG402017938 Solanum tuberosum HOM05D002674 ORTHO05D007700 8.3e-41 171.4 263 45.6
Hma1.2p1_0491F.1_g164500 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 1.1e-40 171.0 184 59.2
Sopen06g003880 Solanum pennellii HOM05D002674 ORTHO05D007700 1.4e-40 170.6 263 45.2
Solyc06g009120.3 Solanum lycopersicum HOM05D002674 ORTHO05D007700 2.4e-40 169.9 263 45.2
Lsat_1_v5_gn_7_11800 Lactuca sativa HOM05D002674 ORTHO05D007700 5.4e-40 168.7 259 46.7
Lsat_1_v5_gn_9_5620 Lactuca sativa HOM05D002674 ORTHO05D007700 5.4e-40 168.7 259 46.7
Peaxi162Scf00399g00714 Petunia axillaris HOM05D002674 ORTHO05D007700 4.5e-39 165.6 281 43.4
Sed0013149 Sechium edule HOM05D002674 ORTHO05D007700 4.5e-39 165.6 234 47.0
EL10Ac7g17509 Beta vulgaris HOM05D002674 ORTHO05D007700 1.0e-38 164.5 277 45.5
BcaB05g23628 Brassica carinata HOM05D002674 ORTHO05D007700 1.7e-38 163.7 196 54.1
Nitab4.5_0005805g0020 Nicotiana tabacum HOM05D002674 ORTHO05D007700 2.9e-38 162.9 258 45.0
CDE05G2513 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 5.0e-38 162.2 232 46.6
Cc01_g20810 Coffea canephora HOM05D002674 ORTHO05D007700 5.0e-38 162.2 256 46.1
THA.LOC104825970 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 1.9e-37 160.2 258 48.8
HanXRQChr10g0284651 Helianthus annuus HOM05D002674 ORTHO05D007700 2.5e-37 159.8 280 45.4
Sc24g0003790 Simmondsia chinensis HOM05D002674 ORTHO05D007700 2.5e-37 159.8 266 48.5
Aa31LG1G9740 Aethionema arabicum HOM05D002674 ORTHO05D007700 5.6e-37 158.7 248 53.6
Hund18157 Selenicereus undatus HOM05D002674 ORTHO05D007700 4.7e-36 155.6 257 52.9
Nn3g21481 Nelumbo nucifera HOM05D002674 ORTHO05D007700 1.0e-35 154.5 206 48.5
SGA_v2.0_scaffold1G00369 Striga asiatica HOM05D002674 ORTHO05D007700 4.0e-35 152.5 239 45.2
TAR636G1278 Trochodendron aralioides HOM05D002674 ORTHO05D007700 5.2e-35 152.1 252 44.4
Oeu054122.1 Olea europaea HOM05D002674 ORTHO05D007700 8.9e-35 151.4 186 56.5
DCAR_002828 Daucus carota HOM05D002674 ORTHO05D007700 1.5e-34 150.6 253 47.4
unitig_22.g5241 Utricularia gibba HOM05D002674 ORTHO05D007700 9.8e-34 147.9 239 45.2
vmacro15007 Vaccinium macrocarpon HOM05D002674 ORTHO05D007700 9.8e-34 147.9 261 45.2
Carub.0001s0195 Capsella rubella HOM05D002674 ORTHO05D007700 3.7e-33 146.0 247 45.3
CSS0000533 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 1.1e-32 144.4 263 42.2
CAN.G1280.1 Capsicum annuum HOM05D002674 ORTHO05D007700 2.1e-28 130.2 250 41.2
Aa31LG5G2060 Aethionema arabicum HOM05D002674 ORTHO05D007700 2.0e-26 123.6 258 40.7
Oeu053149.1 Olea europaea HOM05D002674 ORTHO05D007700 8.3e-25 118.2 186 48.9
ATR0796G100 Amborella trichopoda HOM05D002674 ORTHO05D007700 1.6e-23 114.0 248 37.9
ECA247G3124 Erigeron canadensis HOM05D002674 ORTHO05D007700 4.6e-23 112.5 244 39.3
AUR62033139 Chenopodium quinoa HOM05D002674 ORTHO05D007700 6.6e-22 108.6 189 46.6
SEGI_12569 Sequoiadendron giganteum HOM05D002674 ORTHO05D007700 5.6e-21 105.5 226 42.5
HPP92_006921 Vanilla planifolia HOM05D002674 ORTHO05D007700 2.1e-20 103.6 232 38.4
AUR62008632 Chenopodium quinoa HOM05D002674 ORTHO05D007700 2.8e-20 103.2 150 51.3
Hma1.2p1_0491F.1_g164510 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 8.1e-20 101.7 112 59.8
Os01g0316500 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D007700 7.5e-18 95.1 213 46.5
CANSAT56G3445 Cannabis sativa HOM05D002674 ORTHO05D007700 3.2e-16 89.7 104 54.8
Zm00001eb285590 Zea mays HOM05D002674 ORTHO05D007700 2.1e-15 87.0 238 42.4
BolC6t36475H Brassica oleracea HOM05D000186 ORTHO05D015008 1.5e-13 80.9 101 52.5
Zm00001eb018450 Zea mays HOM05D002674 ORTHO05D007700 1.9e-13 80.5 237 38.4
Zm00001eb127170 Zea mays HOM05D002674 ORTHO05D007700 2.5e-13 80.1 235 38.3
BcaC03g16430 Brassica carinata HOM05D002674 ORTHO05D007700 4.3e-13 79.3 90 55.6
C02p62500 Brassica napus HOM05D002674 ORTHO05D007700 1.7e-09 67.4 62 62.9
C05p48610 Brassica napus HOM05D002674 ORTHO05D007700 3.7e-09 66.2 62 61.3
C08p25960 Brassica napus HOM05D002674 ORTHO05D007700 3.7e-09 66.2 62 61.3
BcaB04g18179 Brassica carinata HOM05D002674 ORTHO05D007700 4.9e-09 65.9 41 73.2
C02p42550 Brassica napus HOM05D000186 ORTHO05D015008 6.4e-09 65.5 40 75.0
BcaB07g32361 Brassica carinata HOM05D002674 ORTHO05D007700 1.9e-08 63.9 94 46.8
A08p09760 Brassica napus HOM05D002674 ORTHO05D007700 1.9e-08 63.9 41 70.7
BraA08t32971Z Brassica rapa HOM05D002674 ORTHO05D007700 1.9e-08 63.9 41 70.7
C06p13190 Brassica napus HOM05D002674 ORTHO05D015008 2.4e-08 63.5 40 72.5
BolC9t55650H Brassica oleracea HOM05D002674 ORTHO05D007700 2.4e-08 63.5 61 62.3
A09p66240 Brassica napus HOM05D002674 ORTHO05D007700 4.1e-08 62.8 39 74.4
BolC1t01853H Brassica oleracea HOM05D002674 ORTHO05D007700 4.1e-08 62.8 44 68.2
BcaB06g28993 Brassica carinata HOM05D002674 ORTHO05D007700 9.2e-08 61.6 39 74.4
C09p27860 Brassica napus HOM05D002674 ORTHO05D007700 2.7e-07 60.1 61 60.7


User provided reference genes

Program Settings