Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 7.2e-163 577.4 340 100.0
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 9.4e-155 550.4 338 96.4
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 3.2e-86 322.8 287 57.5
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 1.6e-85 320.5 287 59.9
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 2.7e-85 319.7 287 59.2
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 3.5e-85 319.3 287 59.6
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 3.5e-85 319.3 288 59.0
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 7.9e-85 318.2 287 59.2
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 5.1e-84 315.5 287 58.2
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 1.5e-83 313.9 278 59.4
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 7.4e-83 311.6 287 58.2
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 3.7e-82 309.3 268 60.4
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 7.1e-78 295.0 268 54.1
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 1.2e-77 294.3 268 54.9
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 1.3e-76 290.8 267 55.4
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 7.4e-75 285.0 267 53.9
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 1.6e-74 283.9 275 53.5
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 1.6e-74 283.9 268 54.5
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 2.8e-74 283.1 287 52.6
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 2.8e-74 283.1 266 54.9
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 8.2e-74 281.6 274 51.8
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 1.8e-73 280.4 266 54.5
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 4.1e-73 279.3 265 52.8
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 6.9e-73 278.5 266 53.4
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 2.0e-72 276.9 275 52.7
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 3.4e-72 276.2 267 52.8
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 1.0e-71 274.6 267 52.8
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 1.3e-71 274.2 267 50.9
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 2.9e-71 273.1 266 52.3
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 3.8e-71 272.7 278 50.4
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 6.5e-71 271.9 278 49.3
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 3.2e-70 269.6 278 48.9
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 3.2e-70 269.6 279 49.1
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 4.2e-70 269.2 311 45.3
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 1.2e-69 267.7 269 52.0
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 1.6e-69 267.3 279 52.0
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 1.6e-69 267.3 278 49.6
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.6e-69 267.3 267 52.1
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.1e-69 266.9 267 52.1
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 2.7e-69 266.5 275 49.1
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 2.7e-69 266.5 266 51.5
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 2.7e-69 266.5 267 52.8
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.6e-69 265.8 267 51.7
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.6e-69 265.8 267 51.7
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.1e-69 265.4 267 51.7
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 3.3e-67 259.6 266 47.7
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 9.7e-67 258.1 280 48.2
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 2.8e-66 256.5 274 50.0
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 6.3e-66 255.4 274 49.6
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 6.3e-66 255.4 283 49.1
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 1.1e-65 254.6 270 49.3
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 9.1e-65 251.5 290 46.9
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 5.9e-64 248.8 278 50.7
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 5.0e-63 245.7 248 51.6
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.5e-63 245.4 242 52.5
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 4.2e-62 242.7 262 49.6
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 2.1e-61 240.4 231 54.5
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 2.7e-61 240.0 279 49.1
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 1.8e-60 237.3 287 47.0
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 3.0e-60 236.5 222 54.5
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 1.1e-59 234.6 292 44.5
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 2.0e-59 233.8 281 44.8
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 9.7e-59 231.5 280 44.3
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 9.7e-59 231.5 316 43.0
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 2.2e-58 230.3 269 45.7
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 1.0e-55 221.5 309 42.7
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 1.9e-54 217.2 260 48.1
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 9.4e-54 214.9 269 43.5
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 1.2e-53 214.5 268 44.4
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 1.8e-52 210.7 262 45.8
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 3.0e-52 209.9 261 44.4
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 6.7e-52 208.8 267 43.8
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 9.7e-51 204.9 193 54.4
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 2.2e-50 203.8 207 49.8
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 9.1e-49 198.4 190 52.6
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 1.6e-45 187.6 206 50.0
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 2.7e-45 186.8 206 50.0
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 6.1e-45 185.7 206 49.5
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 3.7e-42 176.4 186 49.5
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 1.8e-41 174.1 153 57.5
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 2.3e-28 130.6 129 50.4
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 1.5e-11 74.7 111 40.5
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 3.7e-10 70.1 187 26.2


User provided reference genes

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