Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 2.1e-135 485.7 246 100.0
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-112 410.2 243 88.5
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.2e-104 382.1 243 81.5
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.4e-104 380.6 243 80.7
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.3e-97 360.1 216 87.5
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 6.1e-95 351.3 180 98.3
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.6e-87 326.6 216 79.6
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 2.0e-74 283.1 251 62.9
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.7e-74 282.7 251 64.1
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.3e-73 280.4 246 64.2
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.0e-70 270.8 252 61.1
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 3.4e-69 265.8 244 60.2
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 1.7e-68 263.5 244 61.1
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 5.9e-66 255.0 245 60.4
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.0e-54 217.6 225 56.9
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 7.8e-50 201.4 245 51.0
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.0e-49 201.1 244 51.6
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 3.6e-47 192.6 244 50.0
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 4.7e-47 192.2 240 49.6
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 4.0e-46 189.1 247 50.2
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 8.3e-44 181.4 244 48.4
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 8.3e-44 181.4 241 48.5
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 7.1e-43 178.3 245 45.7
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.1e-42 176.8 244 47.5
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 4.6e-42 175.6 244 45.1
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 3.9e-41 172.6 244 44.7
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.1e-40 171.0 248 44.4
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.5e-40 170.6 240 47.5
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.3e-40 169.5 241 44.8
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 3.3e-40 169.5 241 44.8
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 7.3e-40 168.3 238 45.8
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.2e-39 167.5 245 44.5
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.1e-39 166.8 244 43.4
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.1e-39 166.8 244 45.5
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 8.1e-39 164.9 244 42.6
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.4e-38 164.1 248 43.1
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 3.1e-38 162.9 244 45.1
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 6.8e-38 161.8 241 43.2
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.4e-37 159.5 244 43.4
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 1.3e-36 157.5 251 45.0
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 2.2e-36 156.8 247 42.9
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.6e-34 150.6 245 42.4
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 3.5e-34 149.4 250 43.6
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 1.0e-33 147.9 272 39.7
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 2.5e-32 143.3 245 41.6
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 7.3e-32 141.7 244 41.4
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 2.8e-31 139.8 249 41.8
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 4.7e-31 139.0 242 41.3
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 4.7e-31 139.0 244 39.8
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 1.8e-30 137.1 242 38.8
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 8.9e-30 134.8 239 41.4
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 2.9e-28 129.8 250 42.4
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.4e-27 127.5 238 38.7
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 3.2e-27 126.3 245 40.8
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 7.1e-27 125.2 238 37.8
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 9.3e-27 124.8 256 39.5
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 5.1e-25 119.0 242 36.0
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 6.6e-25 118.6 250 37.6
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 5.6e-24 115.5 246 39.4
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.1e-23 113.6 254 37.0
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.8e-23 113.2 247 37.7
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 1.1e-22 111.3 229 37.1
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.6e-21 106.7 255 37.6
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 9.9e-21 104.8 246 36.6
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 9.9e-21 104.8 255 37.6
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.7e-20 104.0 255 37.3
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.4e-19 100.9 177 41.2
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 4.2e-19 99.4 258 35.7
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 5.4e-19 99.0 246 35.8
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.2e-18 97.8 257 38.5
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 3.5e-18 96.3 253 34.0
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 4.6e-18 95.9 243 33.7
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 2.3e-17 93.6 250 33.2
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.0e-17 93.2 257 36.2
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 1.9e-16 90.5 250 34.4
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.9e-16 90.5 251 33.9
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 7.4e-16 88.6 111 49.5
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.3e-15 87.8 109 48.6
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 1.6e-15 87.4 109 49.5
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.6e-15 87.4 109 49.5
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.6e-15 87.4 109 49.5
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 2.8e-15 86.7 250 31.6
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 3.6e-15 86.3 251 33.9
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 6.2e-15 85.5 243 31.3
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-14 84.7 109 46.8
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 1.8e-14 84.0 160 38.8
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 3.4e-13 79.7 225 34.7
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 5.8e-13 79.0 253 34.4
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 7.6e-13 78.6 246 32.5
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.3e-12 77.8 98 52.0
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.9e-12 76.6 176 39.2
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 4.9e-12 75.9 247 32.4
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 4.9e-12 75.9 252 31.3
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 2.4e-11 73.6 258 30.2
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.4e-11 73.6 248 31.9
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 7.1e-11 72.0 252 31.0
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 7.1e-11 72.0 252 31.0
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 7.1e-11 72.0 187 34.2
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 4.6e-10 69.3 234 29.1
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 1.0e-09 68.2 245 32.7
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.0e-09 68.2 253 28.9
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 3.0e-09 66.6 251 30.7
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.9e-09 66.2 242 28.5
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.9e-09 66.2 120 39.2
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 1.1e-08 64.7 244 27.5
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.5e-08 64.3 232 28.9
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.9e-08 63.9 254 26.4
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 3.3e-08 63.2 251 29.5
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 7.4e-08 62.0 246 29.3
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 7.4e-08 62.0 250 28.8
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 1.3e-07 61.2 256 27.7
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 1.3e-07 61.2 245 26.9
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 6.2e-07 58.9 245 29.8
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.1e-06 58.2 276 29.7
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.8e-06 57.4 266 25.6
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 2.4e-06 57.0 241 29.0
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 3.1e-06 56.6 112 40.2
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 6.9e-06 55.5 258 31.4


User provided reference genes

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