Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2N10NB Arachis hypogaea HOM05D005668 ORTHO05D007082 1.3e-76 289.7 145 100.0
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 2.4e-54 215.7 172 68.6
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 1.2e-53 213.4 172 68.0
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 1.2e-42 176.8 168 58.9
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 5.6e-40 167.9 164 56.7
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 8.1e-39 164.1 172 53.5
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 2.4e-38 162.5 167 56.3
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 3.1e-38 162.2 169 54.4
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 4.0e-38 161.8 169 54.4
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 3.8e-36 155.2 169 50.9
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 2.7e-34 149.1 165 49.7
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 7.9e-34 147.5 183 49.7
TPR.G2978 Trifolium pratense HOM05D005668 ORTHO05D007082 2.2e-28 129.4 151 53.0
Psat3g035960 Pisum sativum HOM05D005668 ORTHO05D007082 2.1e-26 122.9 105 58.1
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 1.9e-24 116.3 166 44.6
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 1.6e-23 113.2 178 39.3
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 2.8e-23 112.5 168 44.6
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 3.7e-23 112.1 178 38.2
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 1.1e-22 110.5 159 44.0
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 1.1e-22 110.5 169 41.4
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 1.8e-22 109.8 174 40.2
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 1.8e-22 109.8 164 42.1
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 2.4e-22 109.4 101 57.4
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 3.1e-22 109.0 100 59.0
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 4.0e-22 108.6 101 54.5
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 5.3e-22 108.2 100 58.0
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 6.9e-22 107.8 155 40.0
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 1.2e-21 107.1 175 41.1
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 1.5e-21 106.7 167 41.3
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 2.0e-21 106.3 177 39.0
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 3.4e-21 105.5 90 58.9
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 3.4e-21 105.5 158 43.0
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 5.8e-21 104.8 140 43.6
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 1.0e-20 104.0 90 56.7
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 1.0e-20 104.0 159 42.1
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 1.3e-20 103.6 90 56.7
HanXRQChr10g0292601 Helianthus annuus HOM05D005668 ORTHO05D007082 1.3e-20 103.6 100 56.0
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 2.2e-20 102.8 100 54.0
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 2.9e-20 102.4 114 52.6
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 3.8e-20 102.1 100 54.0
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 4.9e-20 101.7 99 52.5
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 4.9e-20 101.7 101 54.5
ECA247G1252 Erigeron canadensis HOM05D005668 ORTHO05D007082 4.9e-20 101.7 100 54.0
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 4.9e-20 101.7 103 53.4
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 4.9e-20 101.7 174 39.1
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 6.5e-20 101.3 101 51.5
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 8.4e-20 100.9 111 50.5
Lsat_1_v5_gn_9_29260 Lactuca sativa HOM05D005668 ORTHO05D007082 1.1e-19 100.5 100 54.0
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 1.1e-19 100.5 98 53.1
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 1.4e-19 100.1 100 52.0
TPR.G339 Trifolium pratense HOM05D005668 ORTHO05D007082 1.4e-19 100.1 142 42.3
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 1.9e-19 99.8 98 54.1
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 1.9e-19 99.8 98 53.1
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 2.5e-19 99.4 103 52.4
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 2.5e-19 99.4 101 49.5
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 3.2e-19 99.0 142 39.4
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 3.2e-19 99.0 100 53.0
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 5.5e-19 98.2 100 50.0
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 7.1e-19 97.8 100 53.0
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 7.1e-19 97.8 101 46.5
CAN.G351.19 Capsicum annuum HOM05D005668 ORTHO05D007082 7.1e-19 97.8 100 52.0
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 7.1e-19 97.8 100 55.0
THA.LOC104823270 Tarenaya hassleriana HOM05D005668 ORTHO05D007082 7.1e-19 97.8 100 49.0
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 9.3e-19 97.4 101 46.5
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 9.3e-19 97.4 88 54.5
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 1.2e-18 97.1 101 46.5
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 1.2e-18 97.1 100 51.0
Carub.0003s0836 Capsella rubella HOM05D005668 ORTHO05D007082 1.6e-18 96.7 141 40.4
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 1.6e-18 96.7 100 54.0
AL3G20360 Arabidopsis lyrata HOM05D005668 ORTHO05D007082 2.1e-18 96.3 142 39.4
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 2.1e-18 96.3 143 42.0
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 2.1e-18 96.3 143 42.0
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 2.1e-18 96.3 100 51.0
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 2.7e-18 95.9 99 49.5
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 2.7e-18 95.9 123 43.1
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 2.7e-18 95.9 174 37.4
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 3.5e-18 95.5 129 43.4
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 3.5e-18 95.5 100 50.0
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 4.6e-18 95.1 97 49.5
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 6.0e-18 94.7 116 46.6
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 6.0e-18 94.7 100 49.0
SGA_v2.0_scaffold75G24983 Striga asiatica HOM05D005668 ORTHO05D007082 6.0e-18 94.7 114 49.1
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 7.9e-18 94.4 99 47.5
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 1.3e-17 93.6 142 43.7
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 1.8e-17 93.2 100 48.0
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 5.1e-17 91.7 83 56.6
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 6.7e-17 91.3 100 48.0
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 8.7e-17 90.9 115 45.2
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 8.7e-17 90.9 115 45.2
Aa31LG3G1740 Aethionema arabicum HOM05D005668 ORTHO05D007082 1.1e-16 90.5 98 48.0
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 1.5e-16 90.1 123 43.9
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 1.9e-16 89.7 155 38.1
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.9e-16 89.7 98 50.0
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 2.5e-16 89.4 100 47.0
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.5e-16 89.4 93 51.6
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 2.5e-16 89.4 93 51.6
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 3.3e-16 89.0 98 49.0
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 5.7e-16 88.2 94 48.9
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 9.7e-16 87.4 98 49.0
unitig_27.g24805 Utricularia gibba HOM05D005668 ORTHO05D007082 1.3e-15 87.0 100 46.0
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 1.6e-15 86.7 100 46.0
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.6e-15 86.7 98 49.0
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 1.6e-15 86.7 98 49.0
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 2.8e-15 85.9 90 50.0
Sc01g0004980 Simmondsia chinensis HOM05D005668 ORTHO05D007082 4.8e-15 85.1 101 46.5
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 6.3e-15 84.7 98 46.9
Dinv35535 Davidia involucrata HOM05D005668 ORTHO05D007082 3.1e-14 82.4 133 45.1
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 4.1e-14 82.0 90 47.8
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 4.1e-14 82.0 101 43.6
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 4.5e-13 78.6 99 44.4
BcaC01g04218 Brassica carinata HOM05D005668 ORTHO05D007082 1.0e-12 77.4 95 46.3
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 8.5e-12 74.3 87 46.0
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 1.9e-11 73.2 112 36.6
BraA03t12781Z Brassica rapa HOM05D005668 ORTHO05D007082 3.6e-10 68.9 80 42.5
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 4.6e-10 68.6 93 41.9
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 4.6e-10 68.6 93 41.9
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 7.9e-10 67.8 84 45.2
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 1.0e-09 67.4 94 39.4
A03p36100 Brassica napus HOM05D005668 ORTHO05D007082 3.0e-09 65.9 77 41.6
Zm00001eb257420 Zea mays HOM05D005668 ORTHO05D007082 8.2e-07 57.8 82 39.0
Nitab4.5_0000008g0300 Nicotiana tabacum HOM05D005668 ORTHO05D007082 2.4e-06 56.2 63 42.9


User provided reference genes

Program Settings