Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 6.7e-151 537.3 276 100.0
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 3.8e-114 415.2 276 82.6
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 9.5e-89 330.9 276 67.4
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 3.1e-87 325.9 269 67.3
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.7e-85 320.1 276 65.2
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 8.1e-80 301.2 277 61.7
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 1.3e-77 293.9 276 63.0
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 2.4e-76 289.7 276 62.7
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 2.1e-75 286.6 273 60.1
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.8e-72 275.4 282 57.8
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 2.0e-70 270.0 282 56.7
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 3.8e-69 265.8 276 56.2
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 3.2e-68 262.7 283 58.0
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 3.5e-67 259.2 279 56.6
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 4.6e-67 258.8 266 56.4
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 3.0e-66 256.1 266 55.6
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 3.9e-66 255.8 276 58.3
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 5.1e-66 255.4 276 55.1
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 1.9e-65 253.4 266 55.3
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 3.3e-65 252.7 266 55.6
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.6e-65 251.9 266 56.0
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 2.1e-64 250.0 276 56.2
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.1e-64 250.0 266 55.3
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 4.8e-64 248.8 276 54.7
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 2.4e-63 246.5 271 55.4
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 2.4e-63 246.5 276 54.3
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 3.1e-63 246.1 276 54.0
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 1.2e-62 244.2 276 54.3
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 1.2e-62 244.2 276 52.5
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 3.4e-62 242.7 276 52.2
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 4.5e-62 242.3 276 55.8
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 4.5e-62 242.3 266 53.4
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 7.6e-62 241.5 266 54.5
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 7.6e-62 241.5 233 58.8
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 9.9e-62 241.1 330 49.7
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 2.2e-61 240.0 269 52.4
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.9e-61 239.6 273 52.4
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.1e-60 237.7 266 55.3
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.4e-60 237.3 266 53.0
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 2.4e-60 236.5 276 52.9
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.2e-60 236.1 266 53.8
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 4.2e-60 235.7 317 49.8
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.2e-60 235.7 266 53.4
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 9.3e-60 234.6 282 51.1
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 9.3e-60 234.6 276 52.9
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 2.1e-59 233.4 276 52.5
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.7e-59 233.0 277 53.1
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 4.6e-59 232.3 276 52.2
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 4.6e-59 232.3 285 51.6
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 6.0e-59 231.9 279 52.0
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.0e-58 231.1 276 52.5
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 3.0e-58 229.6 238 56.7
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.1e-58 228.8 276 51.4
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 5.1e-58 228.8 278 51.4
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 8.7e-58 228.0 241 55.6
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.1e-57 227.6 276 50.7
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 1.5e-57 227.3 274 52.6
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 1.9e-57 226.9 274 52.2
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.9e-57 226.9 276 51.1
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.5e-57 226.5 276 50.7
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 5.6e-57 225.3 279 49.5
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 9.6e-57 224.6 274 52.9
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.3e-56 224.2 238 54.2
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.3e-56 224.2 238 54.2
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 3.7e-56 222.6 278 49.6
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.2e-56 221.5 238 54.2
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.1e-55 221.1 274 50.7
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.4e-55 220.7 266 51.1
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 4.0e-55 219.2 233 54.5
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 2.0e-54 216.9 277 50.2
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.0e-54 216.9 266 50.0
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 2.6e-54 216.5 237 52.3
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 2.6e-54 216.5 237 53.2
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 4.5e-54 215.7 260 49.6
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 5.8e-54 215.3 269 49.8
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 5.8e-54 215.3 261 49.4
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.2e-53 213.4 284 48.2
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 8.4e-53 211.5 236 52.1
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.4e-52 210.7 263 51.3
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.9e-52 210.3 229 53.3
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 3.2e-52 209.5 268 48.5
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 5.5e-52 208.8 261 49.4
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 5.5e-52 208.8 267 48.3
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 5.5e-52 208.8 267 48.3
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.5e-52 208.8 276 48.6
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 9.3e-52 208.0 146 74.0
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.2e-51 207.6 276 47.8
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 1.6e-51 207.2 137 78.1
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 3.5e-51 206.1 238 51.3
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.6e-51 205.7 211 56.4
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 6.0e-51 205.3 267 48.7
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 7.9e-51 204.9 276 48.9
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 7.9e-51 204.9 269 49.4
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.0e-50 204.5 216 57.9
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 1.8e-50 203.8 250 48.8
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 2.3e-50 203.4 229 53.7
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 5.1e-50 202.2 259 49.8
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.5e-49 200.7 222 52.7
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 3.3e-49 199.5 270 46.3
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 5.7e-49 198.7 243 50.2
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 9.7e-49 198.0 240 50.4
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 9.7e-49 198.0 277 48.4
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 3.7e-48 196.1 279 46.6
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 4.8e-48 195.7 266 45.9
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.1e-47 194.5 277 46.9
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 1.4e-47 194.1 144 71.5
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.4e-47 194.1 265 46.8
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.8e-47 193.7 277 47.7
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 9.0e-47 191.4 221 49.8
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.7e-46 188.3 217 53.5
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 2.2e-45 186.8 240 50.8
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.2e-45 186.8 270 44.8
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 2.9e-45 186.4 235 50.2
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 6.5e-45 185.3 267 43.8
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 5.5e-44 182.2 135 69.6
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 9.4e-44 181.4 196 57.7
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 2.1e-43 180.3 271 46.5
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 2.7e-43 179.9 276 44.9
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 4.6e-43 179.1 271 45.0
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 7.9e-43 178.3 234 45.3
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 1.4e-42 177.6 234 47.4
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 1.4e-42 177.6 237 47.7
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 1.4e-42 177.6 238 47.9
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 1.8e-42 177.2 266 45.9
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 3.0e-42 176.4 234 47.0
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 3.0e-42 176.4 234 47.0
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 1.5e-41 174.1 111 75.7
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 2.0e-41 173.7 281 45.6
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 2.0e-41 173.7 125 72.8
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 2.5e-41 173.3 277 43.3
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 4.3e-41 172.6 255 45.1
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 5.7e-41 172.2 278 43.2
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 5.7e-41 172.2 267 44.2
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.7e-40 170.6 228 48.7
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 1.4e-39 167.5 235 45.5
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.4e-39 167.5 212 47.2
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 1.8e-39 167.2 130 65.4
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 6.9e-39 165.2 274 42.0
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 9.1e-39 164.9 104 72.1
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.2e-38 164.5 165 55.2
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 1.5e-38 164.1 105 76.2
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 1.5e-38 164.1 272 43.0
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 3.4e-38 162.9 167 55.1
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 4.5e-38 162.5 236 45.3
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 5.9e-38 162.2 273 42.1
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 7.7e-38 161.8 126 65.1
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 1.0e-37 161.4 103 75.7
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 2.5e-36 156.8 237 44.7
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 3.6e-35 152.9 102 72.5
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 4.7e-35 152.5 184 48.4
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 6.1e-35 152.1 233 44.6
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 4.5e-30 136.0 85 76.5
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 4.5e-30 136.0 85 76.5
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.3e-29 134.4 236 41.1
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 6.5e-29 132.1 112 61.6
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 5.2e-26 122.5 104 60.6
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 6.7e-26 122.1 188 44.7
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 4.4e-25 119.4 81 70.4
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.1e-23 112.8 85 67.1
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 2.0e-22 110.5 88 65.9
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 8.0e-19 98.6 90 61.1
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 7.5e-17 92.0 93 49.5
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.6e-11 74.3 81 45.7
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 3.6e-11 73.2 263 29.7
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.4e-10 71.2 78 47.4
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 7.5e-09 65.5 40 75.0
QL09p050907 Quercus lobata HOM05D004056 ORTHO05D004894 9.8e-09 65.1 96 47.9
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 3.5e-06 56.6 43 60.5


User provided reference genes

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