Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 7.8e-61 238.0 255 100.0
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 7.8e-61 238.0 255 100.0
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 4.6e-53 212.2 261 92.3
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 5.1e-52 208.8 261 92.7
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 6.6e-52 208.4 261 92.7
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 5.6e-51 205.3 256 92.2
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 6.2e-50 201.8 260 91.5
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 6.2e-50 201.8 260 92.3
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 4.0e-49 199.1 263 90.5
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 5.2e-49 198.7 257 89.1
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 1.5e-48 197.2 259 90.3
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 9.9e-48 194.5 261 90.8
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 1.3e-47 194.1 264 90.2
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 4.9e-47 192.2 263 90.1
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 5.4e-46 188.7 255 89.4
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 1.2e-45 187.6 261 90.4
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 4.6e-45 185.7 257 86.4
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.0e-44 184.5 256 87.5
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 1.7e-44 183.7 255 89.4
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 5.1e-44 182.2 263 84.0
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 6.6e-44 181.8 262 87.8
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.1e-43 181.0 257 89.5
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.1e-43 181.0 264 86.7
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.6e-42 177.2 262 85.5
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 2.1e-42 176.8 265 86.4
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 2.8e-42 176.4 262 79.8
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 3.6e-42 176.0 265 84.9
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 4.7e-42 175.6 259 86.9
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 6.2e-42 175.3 274 85.0
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.1e-41 174.5 265 76.6
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 8.4e-39 164.9 261 82.4
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.4e-38 164.1 241 87.6
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 2.7e-37 159.8 238 84.5
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 1.0e-36 157.9 254 81.5
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.3e-36 156.8 241 86.3
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 6.6e-36 155.2 253 80.2
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 1.9e-35 153.7 262 80.2
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 5.6e-35 152.1 255 84.3
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 1.8e-33 147.1 265 57.7
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 5.3e-33 145.6 256 81.6
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 6.9e-33 145.2 257 80.5
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 9.0e-33 144.8 257 65.0
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 2.9e-31 139.8 256 81.2
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 3.2e-30 136.3 255 77.6
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 3.2e-30 136.3 260 82.3
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 4.2e-30 136.0 241 81.7
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.2e-29 134.4 239 82.0
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 2.1e-29 133.7 256 75.0
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.1e-29 133.7 237 76.4
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 5.1e-28 129.0 263 75.3
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.1e-28 129.0 247 79.8
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 6.6e-28 128.6 217 87.6
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 1.5e-27 127.5 255 76.5
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 1.5e-27 127.5 234 80.8
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 5.6e-27 125.6 255 73.7
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 5.6e-27 125.6 240 80.0
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 9.6e-27 124.8 266 68.0
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.3e-26 124.4 251 77.7
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.3e-26 124.4 248 79.4
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 2.1e-26 123.6 250 78.4
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.1e-26 123.6 250 78.4
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 2.1e-26 123.6 267 69.7
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 3.6e-26 122.9 240 79.6
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 6.2e-26 122.1 247 78.9
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 1.8e-25 120.6 239 79.9
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 1.8e-25 120.6 268 69.0
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 2.4e-25 120.2 269 68.8
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.5e-24 117.5 208 65.4
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 3.4e-24 116.3 255 76.1
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 1.7e-23 114.0 250 75.2
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 1.1e-22 111.3 255 75.7
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.9e-22 110.5 129 92.2
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 5.4e-22 109.0 264 77.3
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 9.3e-22 108.2 280 38.2
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 3.5e-21 106.3 215 82.3
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.1e-20 102.4 255 76.1
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.3e-18 97.8 240 77.1
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.3e-18 97.8 260 69.2
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 2.8e-18 96.7 252 63.9
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 1.1e-17 94.7 245 75.1
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 1.4e-17 94.4 246 74.8
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 3.1e-17 93.2 241 68.0
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.3e-17 92.4 50 82.0
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 6.9e-17 92.0 241 75.9
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 2.0e-16 90.5 137 86.1
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 2.6e-16 90.1 246 74.0
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 3.4e-16 89.7 246 74.8
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 1.7e-15 87.4 180 86.1
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.7e-15 87.4 241 73.9
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.2e-15 87.0 212 75.9
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 3.8e-15 86.3 242 49.6
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 8.4e-15 85.1 64 68.8
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.4e-14 84.3 242 73.6
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 1.4e-14 84.3 332 59.0
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 1.4e-14 84.3 239 74.1
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 2.5e-14 83.6 238 72.3
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 3.2e-14 83.2 149 76.5
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 7.1e-14 82.0 65 67.7
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 7.1e-14 82.0 51 70.6
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 1.6e-13 80.9 240 72.1
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.1e-13 80.5 245 71.4
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 2.7e-13 80.1 51 66.7
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 6.0e-13 79.0 48 75.0
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 5.1e-12 75.9 52 65.4
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 6.7e-12 75.5 52 65.4
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 6.7e-12 75.5 52 65.4
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 6.7e-12 75.5 50 66.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 6.7e-12 75.5 65 55.4
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 8.7e-12 75.1 49 65.3
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 8.7e-12 75.1 49 65.3
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 8.7e-12 75.1 51 68.6
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.1e-11 74.7 44 72.7
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 1.9e-11 73.9 232 73.3
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 3.3e-11 73.2 56 62.5
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 4.3e-11 72.8 51 62.7
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 5.7e-11 72.4 248 64.9
Zm00001eb022680 Zea mays HOM05D004463 ORTHO05D004724 7.4e-11 72.0 259 65.6
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 9.6e-11 71.6 47 70.2
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 9.6e-11 71.6 213 77.5
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 1.3e-10 71.2 56 58.9
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 1.6e-10 70.9 51 60.8
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 2.8e-10 70.1 47 68.1
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 3.7e-10 69.7 51 62.7
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 8.2e-10 68.6 51 64.7
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 1.1e-09 68.2 135 81.5
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 9.0e-09 65.1 58 53.4
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 9.0e-09 65.1 48 62.5
Peaxi162Scf00684g00132 Petunia axillaris HOM05D004463 ORTHO05D004724 9.0e-09 65.1 72 62.5
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.0e-08 63.9 51 58.8
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 2.6e-08 63.5 48 62.5
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.4e-08 63.2 200 72.5
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 4.5e-08 62.8 51 58.8
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 4.5e-08 62.8 51 60.8
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 4.5e-08 62.8 43 62.8
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 5.8e-08 62.4 51 58.8
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 7.6e-08 62.0 109 90.8
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 7.6e-08 62.0 34 82.4
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 1.0e-07 61.6 51 58.8
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 1.7e-07 60.8 51 56.9
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 2.2e-07 60.5 46 54.3
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.9e-07 60.1 42 64.3
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.9e-07 60.1 51 56.9
AUR62016820 Chenopodium quinoa HOM05D004463 ORTHO05D004724 5.0e-07 59.3 106 91.5
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 5.0e-07 59.3 51 54.9
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 5.0e-07 59.3 48 58.3
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 8.4e-07 58.5 51 56.9
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 8.4e-07 58.5 51 56.9
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 8.4e-07 58.5 51 54.9
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 8.4e-07 58.5 50 52.0
Cfa005098 Carpinus fangiana HOM05D065658 ORTHO05D004724 1.4e-06 57.8 45 57.8
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.5e-06 57.0 42 59.5
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 3.2e-06 56.6 43 60.5
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.2e-06 56.6 43 60.5
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.2e-06 56.6 43 60.5
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.2e-06 56.6 43 60.5
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 3.2e-06 56.6 43 60.5
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 3.2e-06 56.6 35 71.4
Lj7P673T50 Lonicera japonica HOM05D004463 ORTHO05D004724 4.2e-06 56.2 109 68.8
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 4.2e-06 56.2 43 58.1
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 9.3e-06 55.1 42 64.3


User provided reference genes

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