Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 1.2e-95 353.2 184 100.0
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 2.1e-71 272.7 186 82.8
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 2.1e-47 193.0 179 64.2
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 4.6e-47 191.8 133 79.7
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 7.9e-47 191.0 113 88.5
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 1.3e-46 190.3 129 79.8
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 1.8e-46 189.9 132 80.3
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 2.3e-46 189.5 130 81.5
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 3.9e-46 188.7 130 76.2
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 3.9e-46 188.7 116 85.3
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 6.7e-46 188.0 124 81.5
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 1.1e-45 187.2 136 74.3
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 1.5e-45 186.8 130 80.0
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 1.5e-45 186.8 108 89.8
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 1.9e-45 186.4 128 80.5
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 2.5e-45 186.0 120 81.7
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 4.3e-45 185.3 108 89.8
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 5.6e-45 184.9 119 80.7
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 7.4e-45 184.5 148 69.6
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 7.4e-45 184.5 108 88.0
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 7.4e-45 184.5 125 77.6
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 7.4e-45 184.5 107 90.7
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 7.4e-45 184.5 126 80.2
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 7.4e-45 184.5 145 71.7
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 9.6e-45 184.1 148 69.6
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 1.6e-44 183.3 119 79.8
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 1.6e-44 183.3 140 73.6
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.1e-44 183.0 126 79.4
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.1e-44 183.0 126 79.4
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 2.1e-44 183.0 126 79.4
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 2.8e-44 182.6 122 80.3
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.7e-44 182.2 130 74.6
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 3.7e-44 182.2 118 81.4
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 3.7e-44 182.2 119 81.5
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 4.8e-44 181.8 121 80.2
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 4.8e-44 181.8 103 92.2
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 4.8e-44 181.8 107 85.0
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 6.2e-44 181.4 126 77.0
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 6.2e-44 181.4 140 70.7
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 6.2e-44 181.4 117 81.2
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 8.1e-44 181.0 126 79.4
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 8.1e-44 181.0 125 77.6
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 1.1e-43 180.6 105 89.5
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 1.1e-43 180.6 109 84.4
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 1.4e-43 180.3 108 83.3
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 1.8e-43 179.9 106 87.7
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 2.4e-43 179.5 107 84.1
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 2.4e-43 179.5 125 79.2
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 4.0e-43 178.7 111 82.9
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 4.0e-43 178.7 126 77.8
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 5.3e-43 178.3 115 80.9
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 6.9e-43 177.9 115 80.0
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 6.9e-43 177.9 115 80.0
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 6.9e-43 177.9 115 80.0
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 6.9e-43 177.9 105 87.6
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 6.9e-43 177.9 105 87.6
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 6.9e-43 177.9 104 88.5
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 6.9e-43 177.9 124 79.0
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 1.2e-42 177.2 120 78.3
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 1.2e-42 177.2 126 73.8
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 1.2e-42 177.2 107 85.0
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 2.6e-42 176.0 121 76.9
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 2.6e-42 176.0 126 77.0
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 3.4e-42 175.6 112 79.5
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 4.5e-42 175.3 129 70.5
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 5.8e-42 174.9 107 82.2
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 5.8e-42 174.9 107 82.2
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 5.8e-42 174.9 107 82.2
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 5.8e-42 174.9 107 82.2
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 5.8e-42 174.9 107 84.1
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 5.8e-42 174.9 129 71.3
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 5.8e-42 174.9 115 79.1
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 5.8e-42 174.9 108 83.3
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 7.6e-42 174.5 120 75.0
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 7.6e-42 174.5 131 73.3
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 7.6e-42 174.5 121 76.9
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.0e-41 174.1 126 75.4
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 1.7e-41 173.3 137 67.9
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 1.7e-41 173.3 122 75.4
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 1.7e-41 173.3 128 68.8
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 3.8e-41 172.2 127 74.0
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 3.8e-41 172.2 105 81.9
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 3.8e-41 172.2 108 80.6
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 3.8e-41 172.2 123 74.8
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 8.4e-41 171.0 107 80.4
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 8.4e-41 171.0 108 79.6
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 1.4e-40 170.2 123 74.0
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 1.4e-40 170.2 110 79.1
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 1.9e-40 169.9 129 69.8
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 3.2e-40 169.1 124 71.0
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 4.2e-40 168.7 105 81.0
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 4.2e-40 168.7 123 75.6
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 7.1e-40 167.9 105 80.0
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 7.1e-40 167.9 105 80.0
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 1.6e-39 166.8 139 69.1
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 3.5e-39 165.6 103 80.6
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 1.1e-37 160.6 99 80.8
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 1.1e-37 160.6 107 72.9
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 2.8e-36 156.0 122 65.6
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 2.4e-35 152.9 107 71.0
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 2.4e-35 152.9 107 71.0
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 2.6e-34 149.4 106 70.8
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 1.3e-30 137.1 108 66.7
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.8e-30 136.7 126 66.7
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 5.1e-30 135.2 110 63.6
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 5.1e-30 135.2 79 88.6
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 1.1e-29 134.0 75 93.3
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 1.9e-29 133.3 78 88.5
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 1.8e-27 126.7 81 79.0
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 4.1e-27 125.6 76 82.9
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 5.0e-25 118.6 104 56.7
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 2.2e-20 103.2 80 73.8
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 2.4e-19 99.8 53 92.5
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 3.4e-18 95.9 79 59.5
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 7.9e-15 84.7 111 43.2


User provided reference genes

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