Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 9.7e-172 606.7 297 100.0
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 9.7e-172 606.7 297 100.0
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 1.3e-152 543.1 293 89.1
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 3.8e-152 541.6 293 88.7
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 7.2e-151 537.3 293 87.4
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 2.1e-150 535.8 295 87.8
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 2.1e-150 535.8 295 87.5
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 2.7e-150 535.4 293 88.1
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 6.8e-149 530.8 286 89.2
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 4.4e-148 528.1 287 87.8
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 4.4e-148 528.1 295 85.8
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 1.3e-147 526.6 295 84.7
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 3.7e-147 525.0 287 86.4
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 4.8e-147 524.6 290 86.6
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 8.3e-147 523.9 287 86.8
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 1.4e-146 523.1 287 86.8
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 2.4e-146 522.3 287 85.4
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 4.1e-146 521.5 287 86.8
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 4.1e-146 521.5 287 87.1
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 4.1e-146 521.5 287 86.1
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 7.0e-146 520.8 287 86.8
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 9.1e-146 520.4 287 86.8
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 1.6e-145 519.6 287 85.4
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 2.0e-145 519.2 287 85.7
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 2.0e-145 519.2 287 85.7
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 3.5e-145 518.5 287 85.0
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 3.5e-145 518.5 287 86.1
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 5.9e-145 517.7 287 84.7
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 5.9e-145 517.7 287 86.4
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 5.9e-145 517.7 287 85.4
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 1.3e-144 516.5 287 84.0
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 1.7e-144 516.2 287 84.7
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 2.3e-144 515.8 287 85.4
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 2.3e-144 515.8 287 85.4
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 2.3e-144 515.8 295 84.4
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 3.8e-144 515.0 291 84.5
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 3.8e-144 515.0 287 85.4
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 3.8e-144 515.0 287 85.4
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 3.8e-144 515.0 287 85.4
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 6.5e-144 514.2 287 83.3
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 1.5e-143 513.1 292 82.9
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.9e-143 512.7 287 85.0
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 3.3e-143 511.9 287 82.6
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 3.3e-143 511.9 287 82.6
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 3.3e-143 511.9 287 83.3
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 3.3e-143 511.9 292 83.9
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 4.2e-143 511.5 287 84.0
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 9.5e-143 510.4 287 84.3
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 9.5e-143 510.4 290 84.1
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 1.2e-142 510.0 287 82.9
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 1.6e-142 509.6 287 85.0
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.6e-142 509.6 287 85.0
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 3.6e-142 508.4 287 84.7
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 6.1e-142 507.7 287 81.9
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 6.1e-142 507.7 285 84.6
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 8.0e-142 507.3 318 77.4
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 1.4e-141 506.5 287 81.5
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 1.4e-141 506.5 285 83.9
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 2.3e-141 505.8 287 84.0
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 2.3e-141 505.8 287 82.6
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 2.3e-141 505.8 287 84.7
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 2.3e-141 505.8 287 82.2
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 3.0e-141 505.4 287 82.2
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 3.0e-141 505.4 291 81.8
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 5.2e-141 504.6 280 83.9
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 5.2e-141 504.6 287 81.2
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 5.2e-141 504.6 289 83.7
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 8.9e-141 503.8 292 82.9
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 8.9e-141 503.8 292 82.9
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 8.9e-141 503.8 287 82.2
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 8.9e-141 503.8 289 83.7
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 4.4e-140 501.5 295 82.7
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 5.7e-140 501.1 287 83.6
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 5.7e-140 501.1 292 81.8
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 9.8e-140 500.4 287 82.2
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 1.7e-139 499.6 291 80.8
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 2.2e-139 499.2 287 80.8
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 2.2e-139 499.2 287 80.8
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 2.8e-139 498.8 287 80.8
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 3.7e-139 498.4 287 80.5
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 3.7e-139 498.4 287 82.2
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.1e-138 496.9 287 84.0
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 1.4e-138 496.5 287 80.1
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 1.4e-138 496.5 287 80.1
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 3.1e-138 495.4 292 81.2
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 3.1e-138 495.4 287 83.3
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 4.1e-138 495.0 287 80.5
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 4.1e-138 495.0 287 80.8
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 1.2e-137 493.4 288 80.2
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 3.5e-137 491.9 287 80.1
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 1.3e-136 490.0 285 82.5
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 1.1e-135 486.9 287 79.8
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.5e-135 486.5 287 79.8
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 1.9e-135 486.1 268 87.3
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 2.3e-133 479.2 268 85.4
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 1.2e-132 476.9 268 84.7
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 3.4e-132 475.3 296 75.7
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 3.4e-132 475.3 288 76.7
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 5.8e-132 474.6 268 84.3
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 1.3e-131 473.4 296 78.0
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 2.9e-131 472.2 287 79.4
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 2.0e-129 466.1 251 86.9
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 3.5e-129 465.3 266 82.7
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 2.3e-128 462.6 287 78.7
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 2.5e-127 459.1 287 74.2
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 5.6e-127 458.0 308 74.0
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 9.5e-127 457.2 289 74.4
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 9.5e-127 457.2 287 78.0
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 3.4e-124 448.7 285 73.7
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 1.7e-123 446.4 286 76.9
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 2.7e-121 439.1 285 71.6
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 3.5e-121 438.7 307 69.7
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 7.3e-119 431.0 284 71.1
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.1e-117 427.2 268 76.9
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 1.4e-114 416.8 269 73.2
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 5.1e-112 408.3 268 69.8
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 2.0e-108 396.4 290 65.2
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 1.2e-102 377.1 218 81.2
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 4.5e-92 342.0 320 58.1
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.6e-89 333.6 186 86.6
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 1.6e-86 323.6 185 82.7
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 2.9e-83 312.8 179 84.4
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 7.1e-82 308.1 290 51.0
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 2.5e-79 299.7 296 51.7
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 6.2e-78 295.0 168 83.3
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 1.4e-77 293.9 290 53.1
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 1.5e-76 290.4 188 72.3
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 6.7e-72 275.0 300 46.3
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 1.3e-62 244.2 164 75.0
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 1.3e-54 217.6 311 44.1
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 5.9e-52 208.8 219 53.9
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.5e-50 203.4 219 53.0
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 8.2e-46 188.3 106 82.1
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.0e-40 171.4 96 84.4
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.8e-40 170.6 97 82.5
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 3.7e-38 162.9 92 83.7
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 9.5e-26 121.7 82 75.6
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 6.8e-24 115.5 164 42.7
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 7.8e-20 102.1 92 60.9
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 5.2e-08 62.8 51 54.9
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 2.9e-06 57.0 37 81.1


User provided reference genes

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