Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.27XHB7 Arachis hypogaea HOM05D006480 ORTHO05D008072 1.3e-79 299.7 149 100.0
arahy.Tifrunner.gnm1.ann1.2A26X2 Arachis hypogaea HOM05D006480 ORTHO05D008072 3.0e-57 225.3 119 93.3
Glyma.04G087700 Glycine max HOM05D006480 ORTHO05D008072 1.2e-50 203.4 119 81.5
Glyma.06G089400 Glycine max HOM05D006480 ORTHO05D008072 3.6e-50 201.8 119 80.7
Medtr3g110600 Medicago truncatula HOM05D006480 ORTHO05D008072 1.8e-49 199.5 119 80.7
Lalb_Chr11g0064651 Lupinus albus HOM05D006480 ORTHO05D008072 2.3e-49 199.1 120 79.2
Psat0s2525g0120 Pisum sativum HOM05D006480 ORTHO05D008072 2.3e-49 199.1 119 80.7
VMungo1309G2678 Vigna mungo HOM05D006480 ORTHO05D008072 4.0e-49 198.4 107 86.9
Phvul.009G113300 Phaseolus vulgaris HOM05D006480 ORTHO05D008072 5.2e-49 198.0 119 79.0
Psat5g019760 Pisum sativum HOM05D006480 ORTHO05D008072 5.2e-49 198.0 119 79.8
Sc15g0005270 Simmondsia chinensis HOM05D006480 ORTHO05D008072 1.5e-48 196.4 119 79.0
TPR.G12422 Trifolium pratense HOM05D006480 ORTHO05D008072 3.4e-48 195.3 119 79.0
Lj1g0003564 Lotus japonicus HOM05D006480 ORTHO05D008072 5.8e-48 194.5 119 76.5
AT1G10030 Arabidopsis thaliana HOM05D006480 ORTHO05D008072 9.8e-48 193.7 119 78.2
Ca_30083_v3 Cicer arietinum L. HOM05D006480 ORTHO05D008072 9.8e-48 193.7 119 77.3
AL1G20730 Arabidopsis lyrata HOM05D006480 ORTHO05D008072 1.3e-47 193.4 119 78.2
CARHR010140 Cardamine hirsuta HOM05D006480 ORTHO05D008072 1.7e-47 193.0 119 77.3
Potri.002G112700 Populus trichocarpa HOM05D006480 ORTHO05D008072 1.7e-47 193.0 119 76.5
CiPaw.15G154000 Carya illinoinensis HOM05D006480 ORTHO05D008072 2.2e-47 192.6 113 80.5
Hund05252 Selenicereus undatus HOM05D006480 ORTHO05D008072 2.9e-47 192.2 128 71.9
MELO3C003481.2 Cucumis melo HOM05D006480 ORTHO05D008072 6.4e-47 191.0 151 64.9
Manes.05G185600 Manihot esculenta HOM05D006480 ORTHO05D008072 6.4e-47 191.0 119 75.6
RcHm_v2.0_Chr6g0247791 Rosa chinensis HOM05D006480 ORTHO05D008072 8.3e-47 190.7 119 76.5
Ah.05g166870 Amaranthus hybridus HOM05D006480 ORTHO05D008072 1.1e-46 190.3 119 75.6
FvH4_2g03000 Fragaria vesca HOM05D006480 ORTHO05D008072 1.1e-46 190.3 119 76.5
FAN15G0464 Fragaria x ananassa HOM05D006480 ORTHO05D008072 1.1e-46 190.3 126 73.0
MD05G1108500 Malus domestica HOM05D006480 ORTHO05D008072 1.1e-46 190.3 119 75.6
Ciclev10002836m.g Citrus clementina HOM05D006480 ORTHO05D008072 1.4e-46 189.9 119 75.6
CsaV3_3G048380 Cucumis sativus L. HOM05D006480 ORTHO05D008072 1.4e-46 189.9 119 76.5
Eucgr.F02200 Eucalyptus grandis HOM05D006480 ORTHO05D008072 1.9e-46 189.5 119 75.6
Manes.18G039100 Manihot esculenta HOM05D006480 ORTHO05D008072 1.9e-46 189.5 119 74.8
Sp1g08680 Schrenkiella parvula HOM05D006480 ORTHO05D008072 1.9e-46 189.5 119 77.3
Actinidia10245 Actinidia chinensis HOM05D006480 ORTHO05D008072 2.4e-46 189.1 119 74.8
MSTRG.25010 Avicennia marina HOM05D006480 ORTHO05D008072 2.4e-46 189.1 119 75.6
Gohir.A05G213700 Gossypium hirsutum HOM05D006480 ORTHO05D008072 2.4e-46 189.1 119 73.9
THA.LOC104816778 Tarenaya hassleriana HOM05D006480 ORTHO05D008072 2.4e-46 189.1 119 74.8
Aa31LG1G4870 Aethionema arabicum HOM05D006480 ORTHO05D008072 4.1e-46 188.3 138 69.6
ECA234G4602 Erigeron canadensis HOM05D006480 ORTHO05D008072 4.1e-46 188.3 119 74.8
Thhalv10009099m.g Eutrema salsugineum HOM05D006480 ORTHO05D008072 4.1e-46 188.3 119 76.5
Prupe.8G152200 Prunus persica HOM05D006480 ORTHO05D008072 4.1e-46 188.3 119 74.8
BcaC05g24816 Brassica carinata HOM05D006480 ORTHO05D008072 5.4e-46 188.0 119 75.6
A06p06730 Brassica napus HOM05D006480 ORTHO05D008072 5.4e-46 188.0 119 75.6
Carub.0001s0945 Capsella rubella HOM05D006480 ORTHO05D008072 5.4e-46 188.0 119 76.5
Nn5g30706 Nelumbo nucifera HOM05D006480 ORTHO05D008072 5.4e-46 188.0 119 73.9
BcaC07g38564 Brassica carinata HOM05D006480 ORTHO05D008072 7.0e-46 187.6 113 79.6
Duzib093G0124 Durio zibethinus HOM05D006480 ORTHO05D008072 7.0e-46 187.6 119 72.3
Migut.N02813 Erythranthe guttata HOM05D006480 ORTHO05D008072 7.0e-46 187.6 119 74.8
FAN24G1468 Fragaria x ananassa HOM05D006480 ORTHO05D008072 7.0e-46 187.6 108 81.5
Gohir.D05G217100 Gossypium hirsutum HOM05D006480 ORTHO05D008072 7.0e-46 187.6 119 73.1
Rhsim07G0215700 Rhododendron simsii HOM05D006480 ORTHO05D008072 7.0e-46 187.6 114 75.4
Sed0011969 Sechium edule HOM05D006480 ORTHO05D008072 7.0e-46 187.6 119 74.8
BcaC05g24814 Brassica carinata HOM05D006480 ORTHO05D008072 9.2e-46 187.2 113 78.8
C05p08210 Brassica napus HOM05D006480 ORTHO05D008072 9.2e-46 187.2 113 78.8
BolC8t48966H Brassica oleracea HOM05D006480 ORTHO05D008072 9.2e-46 187.2 115 78.3
Dinv16062 Davidia involucrata HOM05D006480 ORTHO05D008072 9.2e-46 187.2 119 73.9
Hma1.2p1_1068F.1_g253990 Hydrangea macrophylla HOM05D006480 ORTHO05D008072 9.2e-46 187.2 119 73.9
Os12g0633200 Oryza sativa ssp. japonica HOM05D006480 ORTHO05D008072 9.2e-46 187.2 119 73.1
GSVIVG01009268001 Vitis vinifera HOM05D006480 ORTHO05D008072 9.2e-46 187.2 119 74.8
C08p13360 Brassica napus HOM05D006480 ORTHO05D008072 1.2e-45 186.8 108 81.5
Cpa.g.sc160.14 Carica papaya HOM05D006480 ORTHO05D008072 1.2e-45 186.8 119 73.1
Aqoxy6G01530 Aquilegia oxysepala HOM05D006480 ORTHO05D008072 1.6e-45 186.4 119 73.9
BolC5t29573H Brassica oleracea HOM05D006480 ORTHO05D008072 1.6e-45 186.4 108 80.6
Duzib116G0020 Durio zibethinus HOM05D006480 ORTHO05D008072 1.6e-45 186.4 119 73.1
Duzib116G0295 Durio zibethinus HOM05D006480 ORTHO05D008072 1.6e-45 186.4 119 73.1
FAN27G3220 Fragaria x ananassa HOM05D006480 ORTHO05D008072 1.6e-45 186.4 108 80.6
Oeu000749.3 Olea europaea HOM05D006480 ORTHO05D008072 1.6e-45 186.4 109 79.8
SalBow7G2271 Salvia bowleyana HOM05D006480 ORTHO05D008072 1.6e-45 186.4 119 73.9
SGA_v2.0_scaffold152G36869 Striga asiatica HOM05D006480 ORTHO05D008072 1.6e-45 186.4 119 75.6
A08p34230 Brassica napus HOM05D006480 ORTHO05D008072 2.0e-45 186.0 113 78.8
BraA08t35335Z Brassica rapa HOM05D006480 ORTHO05D008072 2.0e-45 186.0 113 78.8
CANSAT25G0792 Cannabis sativa HOM05D006480 ORTHO05D008072 2.0e-45 186.0 119 75.6
ClCG11G014970 Citrullus lanatus HOM05D006480 ORTHO05D008072 2.0e-45 186.0 110 79.1
HanXRQChr10g0293651 Helianthus annuus HOM05D006480 ORTHO05D008072 2.0e-45 186.0 119 73.1
vmacro21395 Vaccinium macrocarpon HOM05D006480 ORTHO05D008072 2.0e-45 186.0 110 77.3
FAN20G1015 Fragaria x ananassa HOM05D006480 ORTHO05D008072 2.7e-45 185.7 126 71.4
Gohir.D06G025000 Gossypium hirsutum HOM05D006480 ORTHO05D008072 2.7e-45 185.7 119 72.3
PSO675G8575 Papaver somniferum HOM05D006480 ORTHO05D008072 2.7e-45 185.7 127 68.5
Nitab4.5_0001614g0080 Nicotiana tabacum HOM05D006480 ORTHO05D008072 4.6e-45 184.9 119 73.1
PSO541G2150 Papaver somniferum HOM05D006480 ORTHO05D008072 4.6e-45 184.9 119 72.3
Thecc.08G081100 Theobroma cacao HOM05D006480 ORTHO05D008072 4.6e-45 184.9 119 72.3
Cc10_g07920 Coffea canephora HOM05D006480 ORTHO05D008072 6.0e-45 184.5 119 74.8
Dinv01222 Davidia involucrata HOM05D006480 ORTHO05D008072 6.0e-45 184.5 119 73.1
PGR031G1285 Punica granatum HOM05D006480 ORTHO05D008072 6.0e-45 184.5 119 72.3
Peaxi162Scf00628g00517 Petunia axillaris HOM05D006480 ORTHO05D008072 7.8e-45 184.1 119 73.1
Gorai.010G029400 Gossypium raimondii HOM05D006480 ORTHO05D008072 1.0e-44 183.7 110 76.4
Lsat_1_v5_gn_5_111841 Lactuca sativa HOM05D006480 ORTHO05D008072 1.0e-44 183.7 119 72.3
Sabra02G0089000 Salix brachista HOM05D006480 ORTHO05D008072 1.3e-44 183.3 107 79.4
EL10Ac1g02330 Beta vulgaris HOM05D006480 ORTHO05D008072 1.7e-44 183.0 119 73.1
Hma1.2p1_2654F.1_g326220 Hydrangea macrophylla HOM05D006480 ORTHO05D008072 2.3e-44 182.6 119 71.4
Lj5A222T80 Lonicera japonica HOM05D006480 ORTHO05D008072 2.3e-44 182.6 109 79.8
TWI56G0589 Tripterygium wilfordii HOM05D006480 ORTHO05D008072 2.3e-44 182.6 120 70.0
MBI16_g24165_MAGBIO Magnolia biondii HOM05D006480 ORTHO05D008072 3.0e-44 182.2 119 70.6
CAN.G416.48 Capsicum annuum HOM05D006480 ORTHO05D008072 5.0e-44 181.4 119 72.3
QL12p040680 Quercus lobata HOM05D006480 ORTHO05D008072 6.6e-44 181.0 107 78.5
Solyc04g077150.3 Solanum lycopersicum HOM05D006480 ORTHO05D008072 6.6e-44 181.0 119 71.4
Sopen04g030760 Solanum pennellii HOM05D006480 ORTHO05D008072 6.6e-44 181.0 119 71.4
Zm00001eb032930 Zea mays HOM05D006480 ORTHO05D008072 8.6e-44 180.6 117 72.6
Gohir.A06G027600 Gossypium hirsutum HOM05D006480 ORTHO05D008072 1.1e-43 180.3 107 76.6
Zm00001eb282130 Zea mays HOM05D006480 ORTHO05D008072 1.1e-43 180.3 117 71.8
Atru.chr13.908 Acer truncatum HOM05D006480 ORTHO05D008072 1.5e-43 179.9 110 75.5
HPP92_019513 Vanilla planifolia HOM05D006480 ORTHO05D008072 1.5e-43 179.9 120 70.8
MBI16_g31814_MAGBIO Magnolia biondii HOM05D006480 ORTHO05D008072 3.3e-43 178.7 119 69.7
PGSC0003DMG400004956 Solanum tuberosum HOM05D006480 ORTHO05D008072 3.3e-43 178.7 119 70.6
Mapoly0019s0092 Marchantia polymorpha HOM05D006480 ORTHO05D008072 8.9e-41 170.6 115 70.4
Gorai.009G223900 Gossypium raimondii HOM05D006480 ORTHO05D008072 2.6e-40 169.1 111 71.2
BraA06t23887Z Brassica rapa HOM05D006480 ORTHO05D008072 3.4e-40 168.7 154 57.8
MD10G1112500 Malus domestica HOM05D006480 ORTHO05D008072 7.5e-40 167.5 122 65.6
Thecc.02G032200 Theobroma cacao HOM05D006480 ORTHO05D008072 3.2e-38 162.2 113 68.1
Dinv09524 Davidia involucrata HOM05D006480 ORTHO05D008072 9.2e-38 160.6 99 75.8
SMO112G0018 Selaginella moellendorffii HOM05D006480 ORTHO05D008072 1.2e-37 160.2 109 66.1
Nitab4.5_0002415g0030 Nicotiana tabacum HOM05D006480 ORTHO05D008072 4.6e-37 158.3 92 78.3
AagrBONN_evm.TU.Sc2ySwM_228.4946 Anthoceros agrestis HOM05D006480 ORTHO05D008072 7.8e-29 131.0 108 56.5
CARHR010030 Cardamine hirsuta HOM05D006480 ORTHO05D008072 3.9e-28 128.6 81 74.1
Zm00001eb129300 Zea mays HOM05D006480 ORTHO05D008072 1.2e-24 117.1 121 47.9
Zm00001eb129210 Zea mays HOM05D006480 ORTHO05D008072 1.5e-24 116.7 111 49.5
Zm00001eb116080 Zea mays HOM05D006480 ORTHO05D008072 5.8e-24 114.8 121 48.8
Zm00001eb116100 Zea mays HOM05D006480 ORTHO05D008072 5.8e-24 114.8 121 48.8
Zm00001eb129140 Zea mays HOM05D006480 ORTHO05D008072 1.7e-23 113.2 121 47.9
Zm00001eb409710 Zea mays HOM05D006480 ORTHO05D008072 1.4e-22 110.2 117 46.2
Duzib041G0452 Durio zibethinus HOM05D006480 ORTHO05D008072 4.6e-21 105.1 75 62.7
Pp3c19_15780 Physcomitrium patens HOM05D006480 ORTHO05D008072 7.8e-21 104.4 85 57.6
CBR_g29820 Chara braunii HOM05D006480 ORTHO05D008072 1.1e-19 100.5 107 43.9
CBR_g8921 Chara braunii HOM05D001598 ORTHO05D002757 7.3e-19 97.8 127 40.9


User provided reference genes

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