Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 5.1e-84 314.3 152 100.0
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 5.1e-84 314.3 152 100.0
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.5e-48 196.4 129 74.4
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 5.0e-47 191.4 126 74.6
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 4.2e-46 188.3 131 72.5
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 7.9e-45 184.1 127 70.9
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.0e-44 183.7 135 69.6
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 6.7e-44 181.0 126 69.0
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 8.8e-44 180.6 94 81.9
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 4.4e-43 178.3 125 69.6
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 5.7e-43 177.9 143 67.1
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 7.4e-43 177.6 128 71.9
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 1.7e-42 176.4 91 83.5
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 2.2e-42 176.0 130 68.5
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 2.2e-42 176.0 142 65.5
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 2.2e-42 176.0 100 77.0
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 2.2e-42 176.0 139 65.5
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 1.1e-41 173.7 114 71.1
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.4e-41 173.3 100 77.0
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 7.0e-41 171.0 109 70.6
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 2.0e-40 169.5 124 63.7
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.6e-40 169.1 103 73.8
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.6e-40 169.1 103 73.8
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 2.6e-40 169.1 144 60.4
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 2.6e-40 169.1 91 81.3
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 3.5e-40 168.7 122 66.4
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 3.5e-40 168.7 90 81.1
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 4.5e-40 168.3 87 79.3
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 7.7e-40 167.5 101 75.2
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 7.7e-40 167.5 90 80.0
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 7.7e-40 167.5 91 82.4
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 1.0e-39 167.2 151 57.0
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 1.0e-39 167.2 131 62.6
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 1.0e-39 167.2 104 73.1
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 1.3e-39 166.8 93 78.5
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 1.3e-39 166.8 130 65.4
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 1.7e-39 166.4 115 67.8
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 1.7e-39 166.4 114 71.9
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 2.2e-39 166.0 88 81.8
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 2.9e-39 165.6 148 58.8
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 2.9e-39 165.6 139 59.0
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 3.8e-39 165.2 139 61.9
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 5.0e-39 164.9 80 86.2
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 6.5e-39 164.5 95 75.8
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.1e-38 163.7 91 79.1
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.1e-38 163.7 139 59.7
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 1.5e-38 163.3 147 55.8
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.5e-38 163.3 136 58.1
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 1.5e-38 163.3 122 66.4
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.9e-38 162.9 95 74.7
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 1.9e-38 162.9 91 78.0
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.5e-38 162.5 136 57.4
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 2.5e-38 162.5 136 57.4
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 3.2e-38 162.2 125 64.0
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 3.2e-38 162.2 94 75.5
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 3.2e-38 162.2 94 75.5
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 3.2e-38 162.2 94 76.6
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 4.2e-38 161.8 81 84.0
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 5.5e-38 161.4 97 73.2
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 9.4e-38 160.6 148 56.8
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 9.4e-38 160.6 81 84.0
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 1.6e-37 159.8 97 72.2
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 2.1e-37 159.5 132 62.1
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 6.1e-37 157.9 102 68.6
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 6.1e-37 157.9 79 84.8
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 6.1e-37 157.9 80 81.2
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 8.0e-37 157.5 82 80.5
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 1.0e-36 157.1 96 72.9
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 1.4e-36 156.8 137 59.9
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 1.8e-36 156.4 123 62.6
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 4.0e-36 155.2 139 57.6
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 2.0e-35 152.9 81 81.5
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 7.5e-35 151.0 116 62.1
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 9.7e-35 150.6 72 88.9
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 2.8e-34 149.1 197 44.7
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 3.7e-34 148.7 198 44.4
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 6.3e-34 147.9 93 64.5
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 7.0e-33 144.4 125 56.0
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 7.0e-33 144.4 90 67.8
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 1.2e-32 143.7 164 50.0
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 4.5e-32 141.7 93 68.8
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 1.0e-31 140.6 215 42.8
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 2.2e-31 139.4 84 70.2
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 6.5e-31 137.9 81 71.6
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 9.4e-30 134.0 112 55.4
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 2.0e-27 126.3 93 59.1
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 1.1e-22 110.5 55 83.6
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 3.2e-22 109.0 51 88.2
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 7.2e-22 107.8 51 90.2
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 1.6e-21 106.7 51 88.2
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 1.0e-20 104.0 52 84.6
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 7.5e-19 97.8 91 57.1
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 3.6e-13 79.0 81 45.7
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 1.2e-11 73.9 34 82.4
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 4.4e-11 72.0 77 50.6
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 5.7e-11 71.6 87 41.4
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 9.8e-11 70.9 40 77.5
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 1.7e-10 70.1 79 43.0
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 2.2e-10 69.7 81 40.7
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 3.7e-10 68.9 77 42.9
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 6.4e-10 68.2 80 41.2
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 8.3e-10 67.8 81 42.0
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.1e-09 67.4 89 37.1
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 1.8e-09 66.6 80 40.0
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.8e-09 66.6 79 40.5
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.8e-09 66.6 79 40.5
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 1.8e-09 66.6 81 39.5
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 2.4e-09 66.2 79 40.5
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 2.4e-09 66.2 80 41.2
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 3.2e-09 65.9 80 38.8
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.2e-09 65.9 85 40.0
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 4.1e-09 65.5 80 38.8
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 4.1e-09 65.5 79 39.2
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 4.1e-09 65.5 98 35.7
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 5.4e-09 65.1 80 38.8
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 7.0e-09 64.7 79 40.5
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 7.0e-09 64.7 79 40.5
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 7.0e-09 64.7 82 35.4
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 7.0e-09 64.7 86 37.2
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 7.0e-09 64.7 85 38.8
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 7.0e-09 64.7 80 38.8
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 7.0e-09 64.7 79 39.2
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 9.2e-09 64.3 105 34.3
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 9.2e-09 64.3 79 39.2
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 9.2e-09 64.3 81 38.3
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 9.2e-09 64.3 62 53.2
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.2e-08 63.9 86 39.5
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 1.2e-08 63.9 79 38.0
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.6e-08 63.5 77 40.3
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.6e-08 63.5 80 40.0
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 1.6e-08 63.5 79 41.8
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 2.0e-08 63.2 80 41.2
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 2.0e-08 63.2 80 38.8
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 2.0e-08 63.2 81 39.5
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 2.7e-08 62.8 79 36.7
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 2.7e-08 62.8 79 38.0
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 2.7e-08 62.8 79 38.0
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 2.7e-08 62.8 79 38.0
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 3.5e-08 62.4 80 41.2
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 4.6e-08 62.0 81 39.5
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 4.6e-08 62.0 81 37.0
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 4.6e-08 62.0 79 39.2
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 5.9e-08 61.6 87 36.8
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 5.9e-08 61.6 87 36.8
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 7.8e-08 61.2 77 40.3
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.0e-07 60.8 80 37.5
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.3e-07 60.5 79 35.4
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 1.3e-07 60.5 79 36.7
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 1.3e-07 60.5 79 36.7
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.3e-07 60.5 79 38.0
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.3e-07 60.5 79 38.0
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 1.7e-07 60.1 79 36.7
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 1.7e-07 60.1 77 37.7
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 2.3e-07 59.7 86 37.2
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 2.3e-07 59.7 91 33.0
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 2.3e-07 59.7 80 36.2
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 3.0e-07 59.3 80 35.0
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 3.0e-07 59.3 87 35.6
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 3.9e-07 58.9 79 36.7
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 3.9e-07 58.9 79 36.7
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 5.0e-07 58.5 81 37.0
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 6.6e-07 58.2 79 35.4
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 6.6e-07 58.2 79 36.7
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.6e-07 57.8 79 35.4
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 8.6e-07 57.8 81 37.0
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 8.6e-07 57.8 79 35.4
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 8.6e-07 57.8 79 35.4
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 4.3e-06 55.5 87 34.5
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 5.6e-06 55.1 90 34.4
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 5.6e-06 55.1 90 34.4
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 5.6e-06 55.1 79 34.2


User provided reference genes

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