Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.27LE56 Arachis hypogaea HOM05D006848 ORTHO05D008445 1.0e-121 440.3 251 100.0
arahy.Tifrunner.gnm1.ann1.9ZN1DC Arachis hypogaea HOM05D006848 ORTHO05D008445 1.4e-107 393.3 251 92.8
Glyma.15G273300 Glycine max HOM05D006848 ORTHO05D008445 2.8e-95 352.4 251 74.9
Glyma.08G154300 Glycine max HOM05D006848 ORTHO05D008445 1.1e-91 340.5 251 71.7
Phvul.005G020200 Phaseolus vulgaris HOM05D006848 ORTHO05D008445 1.1e-91 340.5 250 74.4
VMungo1080G1360 Vigna mungo HOM05D006848 ORTHO05D008445 9.3e-91 337.4 204 81.9
Lalb_Chr01g0015361 Lupinus albus HOM05D006848 ORTHO05D008445 1.3e-84 317.0 247 70.0
TWI53G1868 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 3.9e-81 305.4 243 66.3
Ciclev10032624m.g Citrus clementina HOM05D006848 ORTHO05D008445 1.5e-80 303.5 242 65.7
PGR031G3843 Punica granatum HOM05D006848 ORTHO05D008445 1.5e-80 303.5 247 68.0
Haze_03213 Corylus avellana HOM05D006848 ORTHO05D008445 2.5e-80 302.8 185 78.4
Hma1.2p1_0312F.1_g121500 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 2.5e-80 302.8 248 69.0
Sabra09G0046200 Salix brachista HOM05D006848 ORTHO05D008445 5.6e-80 301.6 237 66.7
CiPaw.13G004400 Carya illinoinensis HOM05D006848 ORTHO05D008445 9.6e-80 300.8 185 79.5
Ca_14368_v3 Cicer arietinum L. HOM05D006848 ORTHO05D008445 1.3e-79 300.4 180 78.3
FvH4_7g00900 Fragaria vesca HOM05D006848 ORTHO05D008445 1.3e-79 300.4 243 66.7
Eucgr.G03390 Eucalyptus grandis HOM05D006848 ORTHO05D008445 2.8e-79 299.3 249 64.3
ClCG09G004240 Citrullus lanatus HOM05D006848 ORTHO05D008445 3.7e-79 298.9 248 64.1
COL.COLO4_23924 Corchorus olitorius HOM05D006848 ORTHO05D008445 3.7e-79 298.9 242 66.9
QL04p007215 Quercus lobata HOM05D006848 ORTHO05D008445 3.7e-79 298.9 181 79.6
Sc10g0000020 Simmondsia chinensis HOM05D006848 ORTHO05D008445 3.7e-79 298.9 179 79.9
CANSAT80G2127 Cannabis sativa HOM05D006848 ORTHO05D008445 1.1e-78 297.4 248 63.7
CsaV3_7G031150 Cucumis sativus L. HOM05D006848 ORTHO05D008445 1.1e-78 297.4 240 63.8
Prupe.2G012000 Prunus persica HOM05D006848 ORTHO05D008445 1.1e-78 297.4 184 83.7
Sed0006624 Sechium edule HOM05D006848 ORTHO05D008445 1.1e-78 297.4 252 61.1
Gohir.D08G063100 Gossypium hirsutum HOM05D006848 ORTHO05D008445 2.4e-78 296.2 245 66.5
Gorai.004G065300 Gossypium raimondii HOM05D006848 ORTHO05D008445 2.4e-78 296.2 245 66.5
Aqoxy3G03705 Aquilegia oxysepala HOM05D006848 ORTHO05D008445 3.1e-78 295.8 207 69.1
MELO3C023542.2 Cucumis melo HOM05D006848 ORTHO05D008445 4.0e-78 295.4 182 76.9
TWI09G1547 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 4.0e-78 295.4 204 72.1
Atru.chr11.2648 Acer truncatum HOM05D006848 ORTHO05D008445 6.9e-78 294.7 174 80.5
Thecc.01G412000 Theobroma cacao HOM05D006848 ORTHO05D008445 6.9e-78 294.7 244 66.0
PGSC0003DMG400006872 Solanum tuberosum HOM05D006848 ORTHO05D008445 1.2e-77 293.9 214 69.6
TPR.G12217 Trifolium pratense HOM05D006848 ORTHO05D008445 2.0e-77 293.1 211 67.8
CAN.G170.111 Capsicum annuum HOM05D006848 ORTHO05D008445 2.6e-77 292.7 217 67.3
Eucgr.H02489 Eucalyptus grandis HOM05D006848 ORTHO05D008445 2.6e-77 292.7 181 77.9
FAN10G1997 Fragaria x ananassa HOM05D006848 ORTHO05D008445 3.4e-77 292.4 255 65.9
Gohir.A08G053600 Gossypium hirsutum HOM05D006848 ORTHO05D008445 4.5e-77 292.0 245 67.8
Rhsim07G0054800 Rhododendron simsii HOM05D006848 ORTHO05D008445 4.5e-77 292.0 248 67.3
Nitab4.5_0000634g0080 Nicotiana tabacum HOM05D006848 ORTHO05D008445 7.6e-77 291.2 216 70.4
TAR623G0094 Trochodendron aralioides HOM05D006848 ORTHO05D008445 7.6e-77 291.2 177 78.0
TAR623G0130 Trochodendron aralioides HOM05D006848 ORTHO05D008445 7.6e-77 291.2 177 78.0
Duzib138G1675 Durio zibethinus HOM05D006848 ORTHO05D008445 1.3e-76 290.4 247 63.2
Nitab4.5_0002477g0050 Nicotiana tabacum HOM05D006848 ORTHO05D008445 1.7e-76 290.0 214 69.2
MBI01_g27616_MAGBIO Magnolia biondii HOM05D006848 ORTHO05D008445 4.9e-76 288.5 182 75.3
MD07G1008600 Malus domestica HOM05D006848 ORTHO05D008445 4.9e-76 288.5 183 76.5
Oeu036185.1 Olea europaea HOM05D006848 ORTHO05D008445 4.9e-76 288.5 181 76.2
Medtr3g028150 Medicago truncatula HOM05D006848 ORTHO05D008445 6.5e-76 288.1 177 75.7
Psat5g204320 Pisum sativum HOM05D006848 ORTHO05D008445 6.5e-76 288.1 170 78.8
Lj7A569T67 Lonicera japonica HOM05D006848 ORTHO05D008445 3.2e-75 285.8 170 79.4
DCAR_029663 Daucus carota HOM05D006848 ORTHO05D008445 4.2e-75 285.4 179 75.4
Sopen01g034120 Solanum pennellii HOM05D006848 ORTHO05D008445 5.5e-75 285.0 179 76.5
MD02G1313800 Malus domestica HOM05D006848 ORTHO05D008445 7.1e-75 284.6 245 64.9
Cpa.g.sc386.5 Carica papaya HOM05D006848 ORTHO05D008445 1.2e-74 283.9 248 62.1
Solyc01g087040.2 Solanum lycopersicum HOM05D006848 ORTHO05D008445 1.2e-74 283.9 179 76.0
Peaxi162Scf00347g00071 Petunia axillaris HOM05D006848 ORTHO05D008445 1.6e-74 283.5 233 69.1
THA.LOC104819691 Tarenaya hassleriana HOM05D006848 ORTHO05D008445 2.1e-74 283.1 194 70.6
vmacro13656 Vaccinium macrocarpon HOM05D006848 ORTHO05D008445 2.1e-74 283.1 239 66.5
EL10Ac2g03652 Beta vulgaris HOM05D006848 ORTHO05D008445 3.5e-74 282.3 244 63.1
SGA_v2.0_scaffold167G38443 Striga asiatica HOM05D006848 ORTHO05D008445 4.6e-74 282.0 234 70.5
Potri.009G062500 Populus trichocarpa HOM05D006848 ORTHO05D008445 1.0e-73 280.8 237 62.4
Migut.B01319 Erythranthe guttata HOM05D006848 ORTHO05D008445 1.3e-73 280.4 247 60.7
BcaC01g04883 Brassica carinata HOM05D006848 ORTHO05D008445 3.0e-73 279.3 233 60.9
BolC3t15604H Brassica oleracea HOM05D006848 ORTHO05D008445 3.0e-73 279.3 233 60.9
Carub.0005s3015 Capsella rubella HOM05D006848 ORTHO05D008445 3.0e-73 279.3 235 60.9
Cc02_g27800 Coffea canephora HOM05D006848 ORTHO05D008445 5.1e-73 278.5 179 75.4
Nn113s43373 Nelumbo nucifera HOM05D006848 ORTHO05D008445 8.7e-73 277.7 179 77.7
Nn2g15435 Nelumbo nucifera HOM05D006848 ORTHO05D008445 8.7e-73 277.7 179 77.7
Peaxi162Scf00428g00063 Petunia axillaris HOM05D006848 ORTHO05D008445 1.5e-72 276.9 199 68.3
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 1.9e-72 276.6 180 72.8
A03p27190 Brassica napus HOM05D006848 ORTHO05D008445 2.5e-72 276.2 233 60.5
BraA03t11932Z Brassica rapa HOM05D006848 ORTHO05D008445 2.5e-72 276.2 233 60.5
CARHR291430 Cardamine hirsuta HOM05D006848 ORTHO05D008445 2.5e-72 276.2 233 60.9
PSO135G0340 Papaver somniferum HOM05D006848 ORTHO05D008445 3.3e-72 275.8 249 58.6
AL5G46400 Arabidopsis lyrata HOM05D006848 ORTHO05D008445 4.3e-72 275.4 215 63.7
PSO384G0049 Papaver somniferum HOM05D006848 ORTHO05D008445 4.3e-72 275.4 247 59.5
HanXRQChr01g0016151 Helianthus annuus HOM05D006848 ORTHO05D008445 2.1e-71 273.1 219 63.0
BcaB01g02988 Brassica carinata HOM05D006848 ORTHO05D008445 6.2e-71 271.6 230 60.4
AUR62009377 Chenopodium quinoa HOM05D006848 ORTHO05D008445 1.1e-70 270.8 177 75.7
SalBow5G3403 Salvia bowleyana HOM05D006848 ORTHO05D008445 1.4e-70 270.4 239 63.2
ECA248G3622 Erigeron canadensis HOM05D006848 ORTHO05D008445 3.1e-70 269.2 244 65.2
FAN01G1688 Fragaria x ananassa HOM05D006848 ORTHO05D008445 6.9e-70 268.1 246 61.0
RcHm_v2.0_Chr3g0473601 Rosa chinensis HOM05D006848 ORTHO05D008445 6.9e-70 268.1 216 66.7
Lsat_1_v5_gn_1_107841 Lactuca sativa HOM05D006848 ORTHO05D008445 1.5e-69 266.9 176 72.2
CDE05G1882 Ceratophyllum demersum HOM05D006848 ORTHO05D008445 2.6e-69 266.2 249 58.2
Sp1g00010 Schrenkiella parvula HOM05D006848 ORTHO05D008445 3.4e-69 265.8 236 66.5
Sp5g00040 Schrenkiella parvula HOM05D006848 ORTHO05D008445 3.4e-69 265.8 236 66.5
AUR62023058 Chenopodium quinoa HOM05D006848 ORTHO05D008445 1.7e-68 263.5 239 64.9
Aa31LG10G17430 Aethionema arabicum HOM05D006848 ORTHO05D008445 2.5e-67 259.6 152 79.6
Lj1g0010524 Lotus japonicus HOM05D006848 ORTHO05D008445 1.8e-65 253.4 170 75.9
ATR0605G006 Amborella trichopoda HOM05D006848 ORTHO05D008445 3.9e-65 252.3 196 63.3
AagrBONN_evm.TU.Sc2ySwM_228.3199 Anthoceros agrestis HOM05D006848 ORTHO05D008445 1.9e-64 250.0 195 61.0
FAN06G1876 Fragaria x ananassa HOM05D006848 ORTHO05D008445 3.3e-64 249.2 234 60.7
C03p32680 Brassica napus HOM05D006848 ORTHO05D008445 9.7e-64 247.7 212 60.8
SEGI_25651 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 1.3e-63 247.3 256 54.7
Os08g0504500 Oryza sativa ssp. japonica HOM05D006848 ORTHO05D008445 2.4e-62 243.0 169 74.6
Zm00001eb034740 Zea mays HOM05D006848 ORTHO05D008445 2.0e-61 240.0 180 64.4
Thhalv10006361m.g Eutrema salsugineum HOM05D006848 ORTHO05D008445 4.5e-61 238.8 227 55.9
SMO217G0004 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 5.9e-61 238.4 171 65.5
SMO356G0122 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 5.9e-61 238.4 171 65.5
AT3G63540 Arabidopsis thaliana HOM05D006848 ORTHO05D008445 5.0e-60 235.3 140 77.9
HPP92_007477 Vanilla planifolia HOM05D006848 ORTHO05D008445 1.4e-59 233.8 251 54.2
Pp3c4_11800 Physcomitrium patens HOM05D006848 ORTHO05D008445 1.5e-56 223.8 195 56.4
Mapoly0075s0034 Marchantia polymorpha HOM05D006848 ORTHO05D008445 3.3e-56 222.6 200 54.5
Manes.10G144600 Manihot esculenta HOM05D006848 ORTHO05D008445 1.4e-54 217.2 203 63.1
Actinidia36713 Actinidia chinensis HOM05D006848 ORTHO05D008445 1.8e-54 216.9 132 77.3
Dinv43453 Davidia involucrata HOM05D006848 ORTHO05D008445 2.5e-51 206.5 134 75.4
CBR_g23941 Chara braunii HOM05D006848 ORTHO05D008445 4.2e-51 205.7 175 57.1
CDE05G3657 Ceratophyllum demersum HOM05D000031 ORTHO05D008445 2.2e-47 193.4 126 73.0
RcHm_v2.0_Chr1g0315791 Rosa chinensis HOM05D006848 ORTHO05D008445 7.7e-45 184.9 120 71.7
Hma1.2p1_0137F.1_g062450 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 1.1e-43 181.0 124 73.4
Actinidia24670 Actinidia chinensis HOM05D006848 ORTHO05D008445 1.6e-37 160.6 105 76.2
MCO14G442 Micromonas commoda HOM05D006848 ORTHO05D008445 5.9e-21 105.5 208 34.1
Cre03.g198850 Chlamydomonas reinhardtii HOM05D006848 ORTHO05D008445 1.6e-18 97.4 178 30.3
SEGI_20764 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 1.6e-18 97.4 136 46.3
PRCOL_00004469 Prasinoderma coloniale HOM05D006848 ORTHO05D008445 1.8e-14 84.0 187 32.1
A04p00030 Brassica napus HOM05D006848 ORTHO05D008445 2.3e-09 67.0 50 62.0
HanXRQChr05g0160801 Helianthus annuus HOM05D006773 ORTHO05D008775 6.4e-07 58.9 152 27.6
DCAR_031498 Daucus carota HOM05D006773 ORTHO05D008775 1.1e-06 58.2 152 29.6
Hund17393 Selenicereus undatus HOM05D006773 ORTHO05D008775 2.4e-06 57.0 152 27.0


User provided reference genes

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