Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 3.1e-190 668.3 336 100.0
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.8e-102 376.7 308 68.2
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.1e-99 367.5 308 66.9
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 4.7e-98 362.1 304 65.1
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 8.0e-98 361.3 308 66.2
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 1.4e-97 360.5 305 66.6
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 3.1e-97 359.4 305 64.6
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 3.7e-95 352.4 306 65.0
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 6.4e-95 351.7 308 64.3
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 9.2e-94 347.8 273 70.7
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.3e-92 344.0 327 60.6
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 7.3e-91 338.2 174 100.0
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 5.2e-89 332.0 306 62.7
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 3.2e-86 322.8 317 59.3
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 3.2e-86 322.8 306 61.4
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 6.0e-85 318.5 314 59.6
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.0e-84 317.8 301 60.8
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 3.3e-83 312.8 235 70.2
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 4.3e-83 312.4 332 56.0
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 2.1e-82 310.1 305 58.4
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.1e-81 307.8 232 69.4
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 1.4e-81 307.4 231 70.6
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 1.8e-81 307.0 231 70.6
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 3.1e-81 306.2 234 67.9
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 5.2e-81 305.4 249 65.9
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 5.2e-81 305.4 308 58.4
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.2e-80 304.3 231 69.3
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.5e-80 303.9 231 68.8
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.5e-80 303.9 231 68.8
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.0e-80 303.5 231 68.8
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 3.4e-80 302.8 228 68.9
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 4.4e-80 302.4 231 69.7
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 7.5e-80 301.6 228 68.9
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 9.9e-80 301.2 328 54.9
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 9.9e-80 301.2 231 70.1
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 9.9e-80 301.2 231 69.3
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.3e-79 300.8 232 68.5
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 3.7e-79 299.3 229 69.0
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 3.7e-79 299.3 231 69.3
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 4.9e-79 298.9 218 71.6
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 4.9e-79 298.9 228 70.2
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 6.4e-79 298.5 231 68.0
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 1.1e-78 297.7 221 71.0
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.9e-78 297.0 231 68.8
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.9e-78 297.0 230 70.0
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.9e-78 297.0 242 64.9
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 3.2e-78 296.2 231 68.0
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 3.2e-78 296.2 230 67.4
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 3.2e-78 296.2 232 67.2
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 3.2e-78 296.2 228 69.7
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 4.1e-78 295.8 235 66.8
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 5.4e-78 295.4 231 68.0
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 5.4e-78 295.4 229 68.6
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 5.4e-78 295.4 229 68.6
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 5.4e-78 295.4 242 64.9
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 5.4e-78 295.4 237 66.2
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 7.1e-78 295.0 232 65.9
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 7.1e-78 295.0 231 68.4
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 7.1e-78 295.0 231 68.4
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 9.2e-78 294.7 223 71.3
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 9.2e-78 294.7 314 55.4
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 9.2e-78 294.7 237 65.0
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 1.2e-77 294.3 232 67.7
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.2e-77 294.3 231 68.4
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 2.1e-77 293.5 232 67.2
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.6e-77 292.4 234 65.0
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.6e-77 292.4 233 65.7
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.6e-77 292.4 235 65.1
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 4.6e-77 292.4 231 66.2
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.6e-77 292.4 254 61.4
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.0e-76 291.2 228 66.7
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 1.0e-76 291.2 301 57.8
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-76 290.8 233 65.2
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.7e-76 290.4 174 82.2
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 3.0e-76 289.7 235 66.0
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 6.6e-76 288.5 230 66.5
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 8.6e-76 288.1 223 66.8
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 8.6e-76 288.1 232 65.1
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 8.6e-76 288.1 232 65.1
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 1.1e-75 287.7 233 65.2
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.5e-75 287.3 236 65.3
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.5e-75 287.3 231 66.2
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.9e-75 287.0 232 65.9
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 1.9e-75 287.0 235 66.0
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 4.3e-75 285.8 233 66.1
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 4.3e-75 285.8 233 66.1
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 4.3e-75 285.8 233 66.1
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 5.6e-75 285.4 231 67.5
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 7.3e-75 285.0 223 67.7
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 9.5e-75 284.6 233 65.7
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.6e-74 283.9 233 65.7
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 2.1e-74 283.5 234 64.1
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.1e-74 283.5 222 68.0
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 2.1e-74 283.5 216 68.5
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.8e-74 283.1 221 69.2
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 4.7e-74 282.3 176 82.4
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 4.7e-74 282.3 234 63.7
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 4.7e-74 282.3 237 64.6
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 4.7e-74 282.3 229 65.9
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 6.2e-74 282.0 229 65.9
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.1e-73 281.2 227 65.6
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 1.8e-73 280.4 226 66.4
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.4e-73 280.0 254 61.8
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 3.1e-73 279.6 231 62.8
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.1e-73 279.6 226 65.0
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 3.1e-73 279.6 236 62.7
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 4.0e-73 279.3 232 64.2
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 5.2e-73 278.9 226 65.0
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 5.2e-73 278.9 227 65.2
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 8.9e-73 278.1 253 61.3
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 8.9e-73 278.1 232 63.8
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 3.4e-72 276.2 224 65.6
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 3.4e-72 276.2 230 63.5
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 3.4e-72 276.2 224 64.7
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.7e-71 273.9 235 65.1
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.9e-71 273.1 237 62.4
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 6.4e-71 271.9 293 54.6
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 9.2e-70 268.1 226 62.8
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 1.2e-69 267.7 229 60.3
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 1.2e-69 267.7 231 63.2
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 3.5e-69 266.2 231 62.3
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.0e-69 265.4 169 77.5
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 7.8e-69 265.0 217 64.1
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.3e-68 264.2 174 75.9
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.1e-65 253.1 166 75.3
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 4.0e-65 252.7 224 61.2
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.7e-60 237.3 173 71.7
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 8.7e-60 235.0 174 70.7
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 4.0e-57 226.1 174 66.7
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 4.0e-57 226.1 174 66.7
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 8.4e-55 218.4 236 53.4
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.2e-53 214.5 175 63.4
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-52 211.1 174 66.7
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.5e-51 207.6 175 66.9
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 4.0e-49 199.5 321 40.5
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 5.3e-49 199.1 190 58.9
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 5.3e-49 199.1 175 58.9
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.6e-48 196.8 227 51.1
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.7e-47 194.1 169 59.8
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 8.4e-47 191.8 164 63.4
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 8.4e-47 191.8 174 56.3
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 2.1e-45 187.2 164 62.2
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 2.8e-42 176.8 171 58.5
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.2e-42 175.6 164 61.0
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.5e-40 171.0 251 41.4
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.9e-35 154.1 163 55.8
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 1.0e-31 141.7 171 50.3
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 9.7e-27 125.2 68 85.3
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.0e-23 115.2 68 77.9
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 8.5e-23 112.1 253 32.4
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 1.8e-17 94.4 185 33.5
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.8e-17 94.4 219 32.0
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.1e-14 85.1 245 29.4
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 4.4e-11 73.2 243 27.2
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 6.3e-10 69.3 42 71.4
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 6.3e-10 69.3 46 73.9
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.6e-08 64.7 41 70.7


User provided reference genes

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