Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 4.4e-98 361.3 184 100.0
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.1e-51 207.2 122 88.5
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 1.4e-51 206.8 122 87.7
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 5.5e-40 168.3 122 74.6
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 7.1e-40 167.9 123 74.8
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 7.1e-40 167.9 123 74.8
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 1.6e-39 166.8 122 72.1
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 4.6e-39 165.2 122 72.1
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 6.7e-38 161.4 125 70.4
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 9.6e-37 157.5 109 78.9
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 1.3e-36 157.1 122 71.3
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 3.5e-31 139.0 122 62.3
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 3.5e-31 139.0 122 62.3
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 4.6e-31 138.7 122 62.3
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 4.6e-31 138.7 122 62.3
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 4.6e-31 138.7 122 62.3
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 1.3e-30 137.1 123 62.6
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 2.3e-30 136.3 122 61.5
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 3.0e-30 136.0 122 62.3
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 3.0e-30 136.0 125 64.0
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 3.9e-30 135.6 122 64.8
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 3.9e-30 135.6 122 63.9
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 3.9e-30 135.6 122 63.1
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 8.7e-30 134.4 122 63.1
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 1.1e-29 134.0 116 65.5
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 1.5e-29 133.7 117 64.1
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 2.5e-29 132.9 122 60.7
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 3.3e-29 132.5 125 61.6
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 5.7e-29 131.7 122 59.8
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 7.4e-29 131.3 122 59.8
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 7.4e-29 131.3 114 64.0
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 7.4e-29 131.3 122 59.8
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 1.6e-28 130.2 114 63.2
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 1.4e-27 127.1 122 58.2
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 5.3e-27 125.2 122 59.8
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 9.0e-27 124.4 106 64.2
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 1.5e-26 123.6 114 61.4
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 3.8e-25 119.0 159 47.2
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 3.8e-25 119.0 122 57.4
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.8e-25 119.0 126 54.8
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 5.0e-25 118.6 134 53.0
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 6.5e-25 118.2 122 55.7
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 8.5e-25 117.9 122 55.7
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 1.1e-24 117.5 122 55.7
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 3.2e-24 115.9 122 54.1
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.2e-24 115.9 134 51.5
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 7.2e-24 114.8 114 55.3
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 9.4e-24 114.4 134 52.2
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 1.6e-23 113.6 98 64.3
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 2.1e-23 113.2 122 57.4
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 2.7e-23 112.8 122 54.1
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 2.7e-23 112.8 124 57.3
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 2.7e-23 112.8 122 53.3
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 3.6e-23 112.5 123 56.9
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 3.6e-23 112.5 123 56.9
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 1.0e-22 110.9 123 55.3
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 1.0e-22 110.9 123 55.3
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 1.4e-22 110.5 123 53.7
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 1.4e-22 110.5 134 50.7
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 2.3e-22 109.8 123 53.7
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 2.3e-22 109.8 122 54.1
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 8.8e-22 107.8 125 53.6
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 8.8e-22 107.8 122 55.7
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 2.0e-21 106.7 104 57.7
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 2.0e-21 106.7 104 57.7
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 2.5e-21 106.3 122 54.1
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 3.3e-21 105.9 123 55.3
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 3.3e-21 105.9 122 53.3
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 3.3e-21 105.9 122 53.3
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 4.3e-21 105.5 122 54.9
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 7.4e-21 104.8 122 51.6
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 1.3e-20 104.0 122 51.6
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 1.3e-20 104.0 122 52.5
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 2.2e-20 103.2 122 51.6
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 3.7e-20 102.4 122 45.9
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 3.7e-20 102.4 122 51.6
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 6.3e-20 101.7 135 49.6
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 8.2e-20 101.3 115 51.3
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 1.1e-19 100.9 136 50.0
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 2.4e-19 99.8 134 48.5
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 2.4e-19 99.8 106 56.6
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 3.1e-19 99.4 123 53.7
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 6.9e-19 98.2 123 48.0
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 6.9e-19 98.2 141 46.8
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 1.2e-18 97.4 122 51.6
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 2.0e-18 96.7 105 51.4
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 2.6e-18 96.3 106 52.8
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 5.9e-18 95.1 106 53.8
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 1.0e-17 94.4 98 57.1
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 2.2e-17 93.2 115 49.6
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 2.9e-17 92.8 104 50.0
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 7.2e-16 88.2 95 48.4
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 1.2e-15 87.4 116 49.1
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 2.7e-15 86.3 108 51.9
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 3.6e-15 85.9 71 64.8
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 5.7e-13 78.6 85 42.4
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 1.2e-10 70.9 114 37.7
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 2.6e-10 69.7 87 41.4
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 2.6e-10 69.7 87 41.4
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 6.5e-09 65.1 95 43.2
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 8.5e-09 64.7 67 55.2
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 8.5e-09 64.7 95 41.1
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 1.2e-07 60.8 96 36.5
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 3.6e-07 59.3 86 41.9


User provided reference genes

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