Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.253NGJ Arachis hypogaea HOM05D002226 ORTHO05D002287 2.6e-35 151.8 89 100.0
arahy.Tifrunner.gnm1.ann1.H9TV53 Arachis hypogaea HOM05D002226 ORTHO05D002287 8.9e-12 73.6 36 97.2
arahy.Tifrunner.gnm1.ann1.FT1LK2 Arachis hypogaea HOM05D002226 ORTHO05D002287 2.0e-11 72.4 36 94.4
Ca_19164_v3 Cicer arietinum L. HOM05D002226 ORTHO05D002287 5.7e-11 70.9 36 91.7
PSO151G0062 Papaver somniferum HOM05D002226 ORTHO05D002287 9.8e-11 70.1 36 91.7
PSO339G3858 Papaver somniferum HOM05D002226 ORTHO05D002287 9.8e-11 70.1 36 91.7
TAR369G0860 Trochodendron aralioides HOM05D002226 ORTHO05D002287 1.3e-10 69.7 36 91.7
TAR625G0379 Trochodendron aralioides HOM05D002226 ORTHO05D002287 1.3e-10 69.7 36 91.7
Potri.001G239200 Populus trichocarpa HOM05D002226 ORTHO05D002287 3.7e-10 68.2 36 88.9
TWI31G1046 Tripterygium wilfordii HOM05D002226 ORTHO05D002287 3.7e-10 68.2 36 88.9
Aqoxy2G02113 Aquilegia oxysepala HOM05D002226 ORTHO05D002287 4.9e-10 67.8 36 88.9
Manes.11G131000 Manihot esculenta HOM05D002226 ORTHO05D002287 4.9e-10 67.8 36 88.9
vmacro03076 Vaccinium macrocarpon HOM05D002226 ORTHO05D002287 4.9e-10 67.8 36 86.1
VMungo1127G0311 Vigna mungo HOM05D002226 ORTHO05D002287 4.9e-10 67.8 36 88.9
Duzib168G0866 Durio zibethinus HOM05D002226 ORTHO05D002287 6.3e-10 67.4 36 86.1
Thecc.09G322500 Theobroma cacao HOM05D002226 ORTHO05D002287 6.3e-10 67.4 36 86.1
Glyma.15G038500 Glycine max HOM05D002226 ORTHO05D002287 8.3e-10 67.0 49 67.3
HanXRQChr02g0049221 Helianthus annuus HOM05D002226 ORTHO05D002287 8.3e-10 67.0 36 86.1
Phvul.L005243 Phaseolus vulgaris HOM05D002226 ORTHO05D002287 8.3e-10 67.0 43 74.4
Rhsim13G0083100 Rhododendron simsii HOM05D002226 ORTHO05D002287 8.3e-10 67.0 36 86.1
Hma1.2p1_0418F.1_g149050 Hydrangea macrophylla HOM05D002226 ORTHO05D002287 1.1e-09 66.6 49 67.3
MBI05_g22052_MAGBIO Magnolia biondii HOM05D002226 ORTHO05D002287 1.1e-09 66.6 49 67.3
Cpa.g.sc81.157 Carica papaya HOM05D002226 ORTHO05D002287 1.4e-09 66.2 36 83.3
Glyma.11G139600 Glycine max HOM05D002226 ORTHO05D002287 1.4e-09 66.2 36 86.1
Gohir.A05G095900 Gossypium hirsutum HOM05D002226 ORTHO05D002287 1.4e-09 66.2 36 83.3
Lalb_Chr19g0137821 Lupinus albus HOM05D002226 ORTHO05D002287 1.4e-09 66.2 36 86.1
Phvul.011G064300 Phaseolus vulgaris HOM05D002226 ORTHO05D002287 1.4e-09 66.2 54 61.1
TAR623G0177 Trochodendron aralioides HOM05D002226 ORTHO05D002287 1.4e-09 66.2 36 86.1
Haze_24089 Corylus avellana HOM05D002226 ORTHO05D002287 1.8e-09 65.9 36 86.1
Nn2g10376 Nelumbo nucifera HOM05D002226 ORTHO05D002287 1.8e-09 65.9 36 83.3
Sabra16G0144200 Salix brachista HOM05D002226 ORTHO05D002287 1.8e-09 65.9 36 86.1
TAR636G3402 Trochodendron aralioides HOM05D002226 ORTHO05D002287 1.8e-09 65.9 36 86.1
Dinv16994 Davidia involucrata HOM05D002226 ORTHO05D002287 2.4e-09 65.5 36 83.3
Dinv42943 Davidia involucrata HOM05D002226 ORTHO05D002287 2.4e-09 65.5 36 83.3
Dinv43157 Davidia involucrata HOM05D002226 ORTHO05D002287 2.4e-09 65.5 36 83.3
Eucgr.B02372 Eucalyptus grandis HOM05D002226 ORTHO05D002287 2.4e-09 65.5 36 83.3
Lj1C154T2 Lonicera japonica HOM05D002226 ORTHO05D002287 2.4e-09 65.5 36 83.3
GSVIVG01024977001 Vitis vinifera HOM05D002226 ORTHO05D002287 2.4e-09 65.5 36 83.3
Glyma.12G063200 Glycine max HOM05D002226 ORTHO05D002287 3.1e-09 65.1 36 83.3
Sabra09G0021300 Salix brachista HOM05D002226 ORTHO05D002287 3.1e-09 65.1 35 88.6
Cfa011495 Carpinus fangiana HOM05D002226 ORTHO05D002287 4.1e-09 64.7 36 83.3
Ca_01329_v3 Cicer arietinum L. HOM05D002226 ORTHO05D002287 4.1e-09 64.7 36 83.3
Cc01_g12790 Coffea canephora HOM05D002226 ORTHO05D002287 4.1e-09 64.7 36 83.3
Ciclev10028791m.g Citrus clementina HOM05D002226 ORTHO05D002287 5.4e-09 64.3 35 85.7
COL.COLO4_18505 Corchorus olitorius HOM05D002226 ORTHO05D002287 5.4e-09 64.3 36 83.3
ECA232G0693 Erigeron canadensis HOM05D002226 ORTHO05D002287 5.4e-09 64.3 36 83.3
MBI14_g37825_MAGBIO Magnolia biondii HOM05D002226 ORTHO05D002287 5.4e-09 64.3 36 83.3
MD03G1095100 Malus domestica HOM05D002226 ORTHO05D002287 5.4e-09 64.3 35 82.9
MD11G1110100 Malus domestica HOM05D002226 ORTHO05D002287 5.4e-09 64.3 35 82.9
Prupe.6G078600 Prunus persica HOM05D002226 ORTHO05D002287 5.4e-09 64.3 35 82.9
ECA247G1299 Erigeron canadensis HOM05D002226 ORTHO05D002287 7.0e-09 63.9 36 80.6
Actinidia37206 Actinidia chinensis HOM05D002226 ORTHO05D002287 9.2e-09 63.5 36 80.6
MSTRG.21199 Avicennia marina HOM05D002226 ORTHO05D002287 9.2e-09 63.5 33 87.9
TPR.G14481 Trifolium pratense HOM05D002226 ORTHO05D002287 9.2e-09 63.5 36 88.9
Atru.chr3.3895 Acer truncatum HOM05D002226 ORTHO05D002287 1.2e-08 63.2 36 83.3
Actinidia07039 Actinidia chinensis HOM05D002226 ORTHO05D002287 1.2e-08 63.2 36 80.6
Duzib150G1147 Durio zibethinus HOM05D002226 ORTHO05D002287 1.2e-08 63.2 36 80.6
HanXRQChr08g0234781 Helianthus annuus HOM05D002226 ORTHO05D002287 1.2e-08 63.2 36 80.6
PGR102G1897 Punica granatum HOM05D002226 ORTHO05D002287 1.2e-08 63.2 35 85.7
Gohir.A03G041900 Gossypium hirsutum HOM05D002226 ORTHO05D002287 1.6e-08 62.8 34 85.3
Gorai.003G132300 Gossypium raimondii HOM05D002226 ORTHO05D002287 1.6e-08 62.8 34 85.3
Lj1A937T95 Lonicera japonica HOM05D002226 ORTHO05D002287 1.6e-08 62.8 36 77.8
Manes.10G030500 Manihot esculenta HOM05D002226 ORTHO05D002287 1.6e-08 62.8 36 80.6
Medtr4g063895 Medicago truncatula HOM05D002226 ORTHO05D002287 1.6e-08 62.8 36 88.9
CiPaw.14G068800 Carya illinoinensis HOM05D002226 ORTHO05D002287 2.0e-08 62.4 36 80.6
CsaV3_6G009020 Cucumis sativus L. HOM05D002226 ORTHO05D002287 2.0e-08 62.4 36 83.3
Glyma.13G335800 Glycine max HOM05D002226 ORTHO05D002287 2.0e-08 62.4 49 63.3
Gorai.009G099500 Gossypium raimondii HOM05D002226 ORTHO05D002287 2.0e-08 62.4 36 77.8
ClCG06G002860 Citrullus lanatus HOM05D002226 ORTHO05D002287 2.7e-08 62.0 36 83.3
MELO3C020644.2 Cucumis melo HOM05D002226 ORTHO05D002287 2.7e-08 62.0 36 80.6
MELO3C022241.2 Cucumis melo HOM05D002226 ORTHO05D002287 2.7e-08 62.0 36 80.6
Lsat_1_v5_gn_9_23261 Lactuca sativa HOM05D002226 ORTHO05D002287 2.7e-08 62.0 32 90.6
Potri.008G055600 Populus trichocarpa HOM05D002226 ORTHO05D002287 2.7e-08 62.0 36 77.8
Thecc.10G042600 Theobroma cacao HOM05D002226 ORTHO05D002287 2.7e-08 62.0 36 80.6
Duzib114G0820 Durio zibethinus HOM05D002226 ORTHO05D002287 3.5e-08 61.6 36 80.6
Potri.009G030500 Populus trichocarpa HOM05D002226 ORTHO05D002287 4.5e-08 61.2 36 80.6
QL01p032206 Quercus lobata HOM05D002226 ORTHO05D002287 4.5e-08 61.2 36 80.6
Sabra08G0040200 Salix brachista HOM05D002226 ORTHO05D002287 4.5e-08 61.2 36 75.0
MD03G1094900 Malus domestica HOM05D002226 ORTHO05D002287 5.9e-08 60.8 35 80.0
AL5G25400 Arabidopsis lyrata HOM05D002226 ORTHO05D002287 7.8e-08 60.5 36 77.8
AT3G46540 Arabidopsis thaliana HOM05D002226 ORTHO05D002287 7.8e-08 60.5 36 77.8
Thhalv10002619m.g Eutrema salsugineum HOM05D002226 ORTHO05D002287 7.8e-08 60.5 36 77.8
Peaxi162Scf00832g00015 Petunia axillaris HOM05D002226 ORTHO05D002287 7.8e-08 60.5 36 77.8
Sabra10G0157700 Salix brachista HOM05D002226 ORTHO05D002287 7.8e-08 60.5 58 53.4
ATR0559G215 Amborella trichopoda HOM05D002226 ORTHO05D002287 1.0e-07 60.1 36 75.0
C03p70700 Brassica napus HOM05D002226 ORTHO05D002287 1.3e-07 59.7 36 75.0
CAN.G327.13 Capsicum annuum HOM05D002226 ORTHO05D002287 1.3e-07 59.7 36 75.0
Nitab4.5_0001800g0190 Nicotiana tabacum HOM05D002226 ORTHO05D002287 1.3e-07 59.7 36 77.8
SalBow3G3381 Salvia bowleyana HOM05D002226 ORTHO05D002287 1.3e-07 59.7 36 77.8
Sopen11g025680 Solanum pennellii HOM05D002226 ORTHO05D002287 1.3e-07 59.7 36 75.0
PGSC0003DMG400000393 Solanum tuberosum HOM05D002226 ORTHO05D002287 1.3e-07 59.7 36 75.0
BcaB01g01010 Brassica carinata HOM05D002226 ORTHO05D002287 1.7e-07 59.3 36 75.0
BcaC01g01910 Brassica carinata HOM05D002226 ORTHO05D002287 1.7e-07 59.3 36 75.0
A06p20900 Brassica napus HOM05D002226 ORTHO05D002287 1.7e-07 59.3 36 75.0
BolC3t19310H Brassica oleracea HOM05D002226 ORTHO05D002287 1.7e-07 59.3 36 75.0
CAN.G1329.3 Capsicum annuum HOM05D002226 ORTHO05D002287 1.7e-07 59.3 36 75.0
Cpa.g.sc1.402 Carica papaya HOM05D002226 ORTHO05D002287 1.7e-07 59.3 36 75.0
DCAR_015623 Daucus carota HOM05D002226 ORTHO05D002287 1.7e-07 59.3 46 65.2
Lj3g0000549 Lotus japonicus HOM05D002226 ORTHO05D002287 1.7e-07 59.3 35 77.1
Sp5g15150 Schrenkiella parvula HOM05D002226 ORTHO05D002287 1.7e-07 59.3 36 75.0
Sed0017366 Sechium edule HOM05D002226 ORTHO05D002287 1.7e-07 59.3 36 75.0
Aa31csc22G210 Aethionema arabicum HOM05D002226 ORTHO05D002287 2.3e-07 58.9 54 57.4
Lj3g0002458 Lotus japonicus HOM05D002226 ORTHO05D002287 2.3e-07 58.9 32 84.4
THA.LOC104810783 Tarenaya hassleriana HOM05D002226 ORTHO05D002287 2.3e-07 58.9 36 72.2
CANSAT54G0203 Cannabis sativa HOM05D002226 ORTHO05D002287 2.9e-07 58.5 32 87.5
Carub.0005s1281 Capsella rubella HOM05D002226 ORTHO05D002287 2.9e-07 58.5 35 77.1
Migut.D02106 Erythranthe guttata HOM05D002226 ORTHO05D004275 2.9e-07 58.5 46 60.9
Nitab4.5_0006994g0070 Nicotiana tabacum HOM05D002226 ORTHO05D002287 2.9e-07 58.5 44 70.5
Psat7g215880 Pisum sativum HOM05D002226 ORTHO05D002287 2.9e-07 58.5 32 87.5
Solyc11g065940.2 Solanum lycopersicum HOM05D002226 ORTHO05D002287 2.9e-07 58.5 36 72.2
HPP92_019107 Vanilla planifolia HOM05D002226 ORTHO05D002287 2.9e-07 58.5 36 77.8
CiPaw.13G095100 Carya illinoinensis HOM05D002226 ORTHO05D002287 3.9e-07 58.2 36 72.2
ClCG03G001580 Citrullus lanatus HOM05D002226 ORTHO05D002287 3.9e-07 58.2 36 75.0
Migut.N02674 Erythranthe guttata HOM05D002226 ORTHO05D002287 3.9e-07 58.2 33 81.8
VMungo1080G1134 Vigna mungo HOM05D002226 ORTHO05D002287 3.9e-07 58.2 41 68.3
FvH4_7g22420 Fragaria vesca HOM05D002226 ORTHO05D002287 5.0e-07 57.8 36 75.0
FAN06G1235 Fragaria x ananassa HOM05D002226 ORTHO05D002287 5.0e-07 57.8 36 75.0
Gohir.A06G176900 Gossypium hirsutum HOM05D002226 ORTHO05D002287 5.0e-07 57.8 35 74.3
Gorai.010G202000 Gossypium raimondii HOM05D002226 ORTHO05D002287 5.0e-07 57.8 35 74.3
QL08p059826 Quercus lobata HOM05D002226 ORTHO05D002287 5.0e-07 57.8 49 57.1
SGA_v2.0_scaffold230G43404 Striga asiatica HOM05D002226 ORTHO05D002287 5.0e-07 57.8 31 87.1
CARHR155260 Cardamine hirsuta HOM05D002226 ORTHO05D002287 6.6e-07 57.4 36 75.0
FAN06G1237 Fragaria x ananassa HOM05D002226 ORTHO05D002287 6.6e-07 57.4 54 55.6
Gohir.D03G126100 Gossypium hirsutum HOM05D002226 ORTHO05D002287 6.6e-07 57.4 34 79.4
FAN01G0784 Fragaria x ananassa HOM05D002226 ORTHO05D002287 8.6e-07 57.0 49 57.1
FAN01G2232 Fragaria x ananassa HOM05D002226 ORTHO05D002287 8.6e-07 57.0 49 57.1
FAN03G1564 Fragaria x ananassa HOM05D002226 ORTHO05D002287 8.6e-07 57.0 49 57.1
Oeu019201.2 Olea europaea HOM05D002226 ORTHO05D002287 8.6e-07 57.0 33 78.8
Atru.chr12.454 Acer truncatum HOM05D002226 ORTHO05D002287 1.1e-06 56.6 32 81.2
Atru.chr12.476 Acer truncatum HOM05D002226 ORTHO05D002287 1.1e-06 56.6 32 81.2
EL10Ac7g16012 Beta vulgaris HOM05D002226 ORTHO05D002287 1.1e-06 56.6 36 75.0
Potri.010G204100 Populus trichocarpa HOM05D002226 ORTHO05D002287 1.1e-06 56.6 36 77.8
Sc06g0006230 Simmondsia chinensis HOM05D002226 ORTHO05D002287 1.1e-06 56.6 33 78.8
Sc06g0006350 Simmondsia chinensis HOM05D002226 ORTHO05D002287 1.1e-06 56.6 33 78.8
BraA06t25171Z Brassica rapa HOM05D002226 ORTHO05D002287 1.5e-06 56.2 36 72.2
RcHm_v2.0_Chr5g0064341 Rosa chinensis HOM05D002226 ORTHO05D002287 1.5e-06 56.2 34 76.5
Solyc01g110500.3 Solanum lycopersicum HOM05D002226 ORTHO05D002287 1.5e-06 56.2 36 72.2
Sopen01g052630 Solanum pennellii HOM05D002226 ORTHO05D002287 1.5e-06 56.2 36 72.2
BcaC07g41930 Brassica carinata HOM05D002226 ORTHO05D002287 1.9e-06 55.8 36 72.2
A09p65780 Brassica napus HOM05D002226 ORTHO05D002287 1.9e-06 55.8 36 72.2
BraA09t41922Z Brassica rapa HOM05D002226 ORTHO05D002287 1.9e-06 55.8 36 72.2
CARHR008600 Cardamine hirsuta HOM05D002226 ORTHO05D002287 1.9e-06 55.8 36 72.2
CDE07G0812 Ceratophyllum demersum HOM05D002226 ORTHO05D002287 1.9e-06 55.8 36 69.4
Thhalv10008666m.g Eutrema salsugineum HOM05D002226 ORTHO05D002287 1.9e-06 55.8 36 72.2
FAN25G1716 Fragaria x ananassa HOM05D002226 ORTHO05D002287 1.9e-06 55.8 34 76.5
MD01G1133800 Malus domestica HOM05D002226 ORTHO05D002287 1.9e-06 55.8 36 75.0
Ah.15g097140 Amaranthus hybridus HOM05D002226 ORTHO05D002287 2.5e-06 55.5 36 69.4
CSS0020270 Camellia sinensis var. sinensis HOM05D002226 ORTHO05D002287 2.5e-06 55.5 36 72.2
DCAR_027632 Daucus carota HOM05D002226 ORTHO05D002287 2.5e-06 55.5 36 66.7
Lsat_1_v5_gn_9_65401 Lactuca sativa HOM05D002226 ORTHO05D002287 2.5e-06 55.5 32 81.2
Prupe.2G235100 Prunus persica HOM05D002226 ORTHO05D002287 2.5e-06 55.5 49 55.1
RcHm_v2.0_Chr1g0367051 Rosa chinensis HOM05D002226 ORTHO05D002287 3.3e-06 55.1 49 55.1
Sp1g07330 Schrenkiella parvula HOM05D002226 ORTHO05D002287 3.3e-06 55.1 36 72.2
Nitab4.5_0001719g0020 Nicotiana tabacum HOM05D002226 ORTHO05D002287 4.3e-06 54.7 36 66.7
Hund18914 Selenicereus undatus HOM05D002226 ORTHO05D002287 4.3e-06 54.7 32 78.1
Carub.0001s0803 Capsella rubella HOM05D002226 ORTHO05D002287 7.3e-06 53.9 51 54.9
AL1G19120 Arabidopsis lyrata HOM05D002226 ORTHO05D002287 9.5e-06 53.5 36 69.4
AT1G08670 Arabidopsis thaliana HOM05D002226 ORTHO05D002287 9.5e-06 53.5 36 69.4
C08p49880 Brassica napus HOM05D002226 ORTHO05D002287 9.5e-06 53.5 36 69.4
BolC8t52516H Brassica oleracea HOM05D002226 ORTHO05D002287 9.5e-06 53.5 36 69.4
CANSAT56G4402 Cannabis sativa HOM05D002226 ORTHO05D002287 9.5e-06 53.5 55 52.7
Cfa001476 Carpinus fangiana HOM05D002226 ORTHO05D002287 9.5e-06 53.5 36 69.4
Ciclev10032416m.g Citrus clementina HOM05D002226 ORTHO05D002287 9.5e-06 53.5 36 66.7


User provided reference genes

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