Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 6.3e-199 697.2 342 100.0
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 1.6e-77 293.9 434 45.9
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.6e-77 292.7 434 45.6
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 3.9e-76 289.3 446 44.6
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 5.7e-75 285.4 467 42.6
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.2e-69 267.7 431 42.2
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 8.8e-68 261.5 432 40.5
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.2e-67 261.2 431 40.8
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 7.5e-67 258.5 429 41.3
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 1.7e-66 257.3 431 41.3
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 4.1e-65 252.7 431 40.8
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 3.5e-64 249.6 431 40.4
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 4.5e-64 249.2 434 39.6
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 4.5e-64 249.2 431 40.1
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 5.9e-64 248.8 431 39.9
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 1.7e-63 247.3 428 40.0
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 4.1e-57 226.1 428 36.9
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.2e-56 224.6 430 36.3
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 5.0e-55 219.2 440 36.8
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 6.6e-55 218.8 429 36.4
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 6.6e-55 218.8 430 35.8
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 8.6e-55 218.4 435 36.3
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.5e-54 217.6 432 35.2
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 1.5e-54 217.6 440 36.1
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.9e-54 217.2 427 37.2
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.9e-54 217.2 427 37.2
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 3.3e-54 216.5 428 34.3
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 5.5e-54 215.7 430 35.1
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 9.5e-54 214.9 437 35.5
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 1.2e-53 214.5 427 36.1
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 1.2e-53 214.5 435 35.4
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.6e-53 214.2 428 34.1
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 3.6e-53 213.0 428 34.1
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 3.6e-53 213.0 433 35.3
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 4.7e-53 212.6 428 34.1
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 6.1e-53 212.2 429 36.8
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 8.0e-53 211.8 429 35.4
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.0e-52 211.5 431 35.3
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.0e-52 211.5 337 40.7
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.0e-52 211.5 430 36.7
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.3e-52 210.3 435 34.9
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.0e-52 209.9 431 35.5
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 3.0e-52 209.9 430 36.5
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 4.0e-52 209.5 430 36.5
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 4.0e-52 209.5 431 35.7
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 5.2e-52 209.1 435 34.7
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 6.8e-52 208.8 433 35.1
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 8.9e-52 208.4 421 35.9
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 3.4e-51 206.5 431 35.7
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 4.4e-51 206.1 430 34.4
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 5.7e-51 205.7 432 35.0
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 5.7e-51 205.7 430 35.3
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 7.5e-51 205.3 424 36.6
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 7.5e-51 205.3 438 34.0
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.3e-50 204.5 424 36.6
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 1.3e-50 204.5 428 34.6
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.7e-50 204.1 430 35.3
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 4.9e-50 202.6 423 35.2
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 4.9e-50 202.6 439 33.9
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 6.3e-50 202.2 433 34.4
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 1.1e-49 201.4 430 34.7
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 1.4e-49 201.1 428 35.5
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.8e-49 200.7 428 34.3
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 3.1e-49 199.9 409 35.2
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 5.4e-49 199.1 424 35.6
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 5.4e-49 199.1 421 35.9
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 5.4e-49 199.1 426 36.4
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 9.2e-49 198.4 427 34.0
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 1.6e-48 197.6 423 35.9
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 3.5e-48 196.4 433 33.0
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 3.5e-48 196.4 432 34.5
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.5e-48 196.4 434 33.9
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 4.5e-48 196.1 435 34.0
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 1.0e-47 194.9 435 34.0
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 1.0e-47 194.9 435 33.1
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 1.3e-47 194.5 424 34.2
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.9e-47 193.4 432 33.8
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.9e-47 193.4 432 33.8
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 3.8e-47 193.0 428 34.3
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 2.5e-46 190.3 431 34.6
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 3.3e-46 189.9 430 31.9
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 9.5e-46 188.3 433 33.3
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 9.5e-46 188.3 438 33.3
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.6e-45 187.6 432 33.1
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 4.7e-45 186.0 438 32.6
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 4.7e-45 186.0 438 32.9
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 4.7e-45 186.0 436 32.8
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 4.7e-45 186.0 425 32.7
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 6.1e-45 185.7 436 33.5
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 1.4e-44 184.5 428 34.8
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 2.3e-44 183.7 428 32.7
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 3.0e-44 183.3 437 33.6
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 3.0e-44 183.3 437 33.6
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 4.0e-44 183.0 438 33.3
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 1.2e-43 181.4 424 35.6
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.5e-43 181.0 438 33.1
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 2.6e-43 180.3 112 79.5
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 2.6e-43 180.3 457 32.8
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 4.4e-43 179.5 433 33.5
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 4.4e-43 179.5 435 33.6
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 2.2e-42 177.2 305 39.3
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 2.9e-42 176.8 461 30.4
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 3.7e-42 176.4 432 31.9
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 4.9e-42 176.0 434 32.3
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 8.3e-42 175.3 432 32.9
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.4e-41 174.5 474 31.6
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.9e-41 174.1 433 30.5
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 4.1e-41 172.9 327 37.9
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 4.1e-41 172.9 311 39.2
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 4.1e-41 172.9 432 31.5
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 5.4e-41 172.6 432 31.5
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 7.0e-41 172.2 435 32.4
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 6.0e-40 169.1 410 32.9
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.4e-36 157.9 308 36.7
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 5.2e-36 156.0 416 30.8
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 7.5e-35 152.1 438 29.2
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.4e-33 147.9 414 30.7
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.4e-33 147.1 435 28.5
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 1.6e-32 144.4 176 47.2
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 3.5e-32 143.3 368 31.0
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 3.5e-32 143.3 434 28.1
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.0e-31 140.2 121 63.6
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.5e-30 137.9 337 31.8
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 5.6e-30 136.0 267 33.3
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 4.7e-29 132.9 204 42.2
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 9.5e-22 108.6 226 31.4
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 8.9e-20 102.1 107 51.4
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.3e-18 98.2 107 54.2
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 3.8e-18 96.7 65 73.8
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 4.6e-16 89.7 221 31.7
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.6e-13 80.1 47 68.1
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.1e-12 77.0 46 67.4
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 9.0e-12 75.5 205 29.3
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 5.4e-09 66.2 57 61.4
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 7.1e-09 65.9 145 31.0
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 7.1e-09 65.9 194 29.9
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 8.7e-07 58.9 37 56.8
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 7.3e-06 55.8 189 27.0


User provided reference genes

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