Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 6.6e-60 233.8 115 100.0
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 3.3e-59 231.5 115 99.1
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 5.7e-19 97.8 77 64.9
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 2.8e-18 95.5 97 51.5
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 3.1e-17 92.0 111 48.6
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 1.2e-16 90.1 81 58.0
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 1.2e-16 90.1 79 58.2
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 2.0e-16 89.4 89 53.9
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 2.6e-16 89.0 112 42.0
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 1.0e-15 87.0 82 54.9
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 1.3e-15 86.7 81 58.0
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 2.9e-15 85.5 112 42.0
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.9e-15 85.5 112 42.0
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 3.8e-15 85.1 92 52.2
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 5.0e-15 84.7 82 53.7
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 6.5e-15 84.3 89 51.7
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 6.5e-15 84.3 77 57.1
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 8.5e-15 84.0 112 41.1
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 1.1e-14 83.6 105 45.7
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.1e-14 83.6 93 51.6
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.4e-14 83.2 112 40.2
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 1.4e-14 83.2 76 56.6
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.9e-14 82.8 92 52.2
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 1.9e-14 82.8 100 46.0
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.5e-14 82.4 78 57.7
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 2.5e-14 82.4 106 44.3
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 4.2e-14 81.6 81 54.3
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 4.2e-14 81.6 82 52.4
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 9.4e-14 80.5 88 46.6
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 2.1e-13 79.3 83 50.6
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 3.6e-13 78.6 79 50.6
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 6.1e-13 77.8 100 44.0
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 7.9e-13 77.4 84 45.2
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 6.7e-12 74.3 82 50.0
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 3.3e-11 72.0 84 44.0
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 5.7e-11 71.2 90 47.8
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.3e-10 70.1 92 42.4
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.2e-10 69.3 99 34.3
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 3.7e-10 68.6 105 38.1
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 4.8e-10 68.2 94 44.7
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 4.8e-10 68.2 84 41.7
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 6.3e-10 67.8 86 40.7
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 8.2e-10 67.4 77 45.5
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 1.1e-09 67.0 90 44.4
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.1e-09 67.0 84 40.5
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 1.8e-09 66.2 83 43.4
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 2.4e-09 65.9 88 39.8
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 3.1e-09 65.5 56 58.9
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 3.1e-09 65.5 79 44.3
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 5.3e-09 64.7 81 43.2
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 9.1e-09 63.9 82 37.8
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.2e-08 63.5 88 37.5
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.2e-08 63.5 88 38.6
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.2e-08 63.5 92 41.3
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.2e-08 63.5 92 41.3
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 1.2e-08 63.5 75 42.7
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 2.6e-08 62.4 74 41.9
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 5.9e-08 61.2 81 42.0
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 5.9e-08 61.2 79 40.5
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 7.7e-08 60.8 75 44.0
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 1.0e-07 60.5 91 39.6
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 1.0e-07 60.5 82 40.2
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 1.7e-07 59.7 88 36.4
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 2.2e-07 59.3 87 39.1
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 2.2e-07 59.3 93 38.7
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 2.9e-07 58.9 58 46.6
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.8e-07 58.5 97 35.1
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 5.0e-07 58.2 92 37.0
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 6.5e-07 57.8 74 41.9
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 6.5e-07 57.8 85 34.1
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 6.5e-07 57.8 110 32.7
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 8.5e-07 57.4 79 39.2
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 8.5e-07 57.4 97 35.1
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 1.1e-06 57.0 82 39.0
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.1e-06 57.0 82 41.5
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 1.1e-06 57.0 93 40.9
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 1.9e-06 56.2 83 42.2
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 1.9e-06 56.2 89 38.2
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 2.5e-06 55.8 88 38.6
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 2.5e-06 55.8 66 40.9
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 5.5e-06 54.7 58 41.4
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 5.5e-06 54.7 95 40.0
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 5.5e-06 54.7 78 37.2
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 7.2e-06 54.3 110 31.8
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 7.2e-06 54.3 82 39.0
Hund00283 Selenicereus undatus HOM05D013587 ORTHO05D002252 7.2e-06 54.3 66 40.9
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 9.4e-06 53.9 83 32.5
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 9.4e-06 53.9 83 42.2


User provided reference genes

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