Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 2.5e-86 322.0 158 100.0
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 1.4e-36 156.8 154 55.8
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 5.6e-33 144.8 154 53.2
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 7.3e-33 144.4 149 55.0
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 3.0e-31 139.0 154 50.6
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 8.9e-31 137.5 145 53.1
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 3.4e-30 135.6 158 50.6
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 2.0e-27 126.3 153 48.4
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 7.3e-25 117.9 154 43.5
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 2.1e-24 116.3 144 47.2
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 4.7e-24 115.2 149 45.0
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 3.1e-23 112.5 144 47.9
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 4.0e-23 112.1 155 41.3
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 6.8e-23 111.3 144 44.4
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 6.8e-23 111.3 144 41.7
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 3.4e-22 109.0 143 44.1
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 7.5e-22 107.8 150 46.0
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 1.3e-21 107.1 144 43.8
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 1.7e-21 106.7 144 40.3
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 3.7e-21 105.5 144 45.8
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 5.4e-20 101.7 145 39.3
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 9.2e-20 100.9 145 40.7
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 1.2e-19 100.5 147 36.7
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.2e-19 100.5 145 39.3
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.2e-19 100.5 145 39.3
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 2.0e-19 99.8 145 42.8
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 2.0e-19 99.8 145 40.0
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 2.7e-19 99.4 145 38.6
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 2.7e-19 99.4 140 40.7
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 2.7e-19 99.4 149 42.3
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 2.7e-19 99.4 145 40.0
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 6.0e-19 98.2 140 40.7
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 7.8e-19 97.8 142 43.7
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 1.0e-18 97.4 143 39.9
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 3.0e-18 95.9 141 39.7
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 3.9e-18 95.5 141 43.3
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.1e-17 94.0 144 36.8
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 1.1e-17 94.0 144 36.8
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.5e-17 93.6 143 38.5
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 2.5e-17 92.8 148 40.5
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 4.3e-17 92.0 155 38.1
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 9.5e-17 90.9 144 38.2
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 2.8e-16 89.4 143 32.9
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 1.8e-15 86.7 144 36.8
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 1.8e-15 86.7 144 36.8
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 3.1e-15 85.9 144 36.1
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 4.0e-15 85.5 140 39.3
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 8.9e-15 84.3 144 36.1
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.5e-14 83.6 144 35.4
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 1.5e-14 83.6 142 35.9
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 1.5e-14 83.6 142 35.9
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 5.8e-14 81.6 149 35.6
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 7.5e-14 81.3 59 59.3
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 9.8e-14 80.9 144 35.4
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.3e-13 80.5 144 34.0
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.7e-13 80.1 157 31.2
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 2.9e-13 79.3 145 36.6
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 2.9e-13 79.3 154 33.1
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 4.9e-13 78.6 151 29.1
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 4.9e-13 78.6 141 32.6
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 6.4e-13 78.2 154 35.7
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 6.4e-13 78.2 144 33.3
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.1e-12 77.4 144 34.7
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 1.1e-12 77.4 141 31.9
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 1.9e-12 76.6 141 31.2
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 1.9e-12 76.6 141 31.2
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 1.9e-12 76.6 141 31.2
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 3.2e-12 75.9 48 70.8
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 5.4e-12 75.1 145 35.2
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 9.2e-12 74.3 142 28.2
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 2.1e-11 73.2 145 33.1
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 2.7e-11 72.8 144 31.2
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 2.7e-11 72.8 144 31.2
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 2.7e-11 72.8 144 31.2
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 3.5e-11 72.4 141 31.2
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 3.5e-11 72.4 144 31.2
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 6.0e-11 71.6 144 29.9
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 1.0e-10 70.9 144 29.9
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.3e-10 70.5 145 31.0
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 1.3e-10 70.5 146 34.9
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.7e-10 70.1 146 28.1
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 8.6e-10 67.8 144 28.5
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 8.6e-10 67.8 144 28.5
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 1.5e-09 67.0 142 27.5
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 2.5e-09 66.2 144 28.5
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 2.5e-09 66.2 144 27.8
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 2.5e-09 66.2 144 27.8
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 3.3e-09 65.9 142 26.8
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 3.3e-09 65.9 142 30.3
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 3.3e-09 65.9 144 27.1
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 4.3e-09 65.5 146 27.4
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 7.3e-09 64.7 144 30.6
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 7.3e-09 64.7 144 27.1
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 9.5e-09 64.3 146 28.8
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 9.5e-09 64.3 146 28.8
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 3.6e-08 62.4 134 26.9
MELO3C020393.2 Cucumis melo HOM05D007408 ORTHO05D009325 6.2e-08 61.6 157 33.1
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 1.4e-07 60.5 143 25.9
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 1.8e-07 60.1 143 25.9
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 2.3e-07 59.7 145 31.7
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 4.0e-07 58.9 143 26.6
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 4.0e-07 58.9 62 46.8
PSO063G0414 Papaver somniferum HOM05D007408 ORTHO05D009325 1.5e-06 57.0 147 30.6
HPP92_003100 Vanilla planifolia HOM05D007408 ORTHO05D009325 3.4e-06 55.8 55 49.1


User provided reference genes

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