Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 4.1e-152 541.6 317 100.0
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 3.9e-126 455.3 351 79.5
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 5.6e-101 371.7 313 76.4
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 2.4e-99 366.3 313 74.1
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 1.7e-97 360.1 314 65.3
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 2.2e-97 359.8 314 65.9
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 7.8e-95 351.3 314 65.3
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 1.0e-94 350.9 333 69.1
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 1.1e-93 347.4 315 64.1
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 1.1e-91 340.9 334 60.5
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 4.9e-89 332.0 335 69.0
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 2.4e-88 329.7 333 65.8
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 1.8e-83 313.5 318 62.3
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 1.6e-79 300.4 317 60.9
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 4.3e-77 292.4 321 56.7
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 5.6e-77 292.0 338 58.9
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 9.6e-77 291.2 315 58.7
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 1.3e-76 290.8 314 54.5
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 1.3e-76 290.8 338 58.3
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 3.7e-76 289.3 319 57.1
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.1e-75 287.7 319 59.2
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.1e-75 287.7 315 60.6
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 1.8e-75 287.0 317 56.2
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 1.8e-75 287.0 315 54.0
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 3.1e-75 286.2 319 56.7
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 1.2e-74 284.3 320 59.1
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 2.0e-74 283.5 338 52.4
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 2.0e-74 283.5 322 61.5
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 2.6e-74 283.1 321 55.8
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 4.5e-74 282.3 321 54.2
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 5.8e-74 282.0 322 60.6
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 7.6e-74 281.6 330 55.8
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 7.6e-74 281.6 314 58.6
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 1.3e-73 280.8 324 56.2
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.3e-73 280.8 340 55.9
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 1.7e-73 280.4 314 56.1
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 3.8e-73 279.3 329 54.1
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 4.9e-73 278.9 326 55.5
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 8.4e-73 278.1 317 54.6
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.9e-72 276.9 312 57.1
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 3.2e-72 276.2 318 53.8
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 4.2e-72 275.8 321 61.4
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 4.2e-72 275.8 319 62.1
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 5.5e-72 275.4 319 58.3
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 5.5e-72 275.4 342 50.9
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 9.3e-72 274.6 312 56.7
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 2.1e-71 273.5 319 63.3
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 3.5e-71 272.7 316 58.9
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 1.0e-70 271.2 316 57.0
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 2.3e-70 270.0 340 50.9
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 3.0e-70 269.6 303 58.7
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 8.7e-70 268.1 328 50.6
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 1.1e-69 267.7 342 51.8
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.1e-69 267.7 326 52.1
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 3.3e-69 266.2 325 53.8
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 3.3e-69 266.2 342 49.7
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 4.3e-69 265.8 317 62.8
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 5.7e-69 265.4 320 52.5
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 7.4e-69 265.0 317 53.3
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 4.8e-68 262.3 326 56.7
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 1.4e-67 260.8 317 50.8
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 3.1e-67 259.6 315 60.6
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 1.2e-66 257.7 328 52.7
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.6e-66 256.5 372 48.9
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 4.5e-66 255.8 313 60.7
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 7.6e-66 255.0 321 51.4
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 1.3e-65 254.2 320 50.0
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 2.9e-65 253.1 284 54.6
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 3.8e-65 252.7 324 49.4
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 3.8e-65 252.7 334 56.3
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.2e-63 247.7 318 50.3
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 2.1e-63 246.9 318 50.3
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 3.6e-63 246.1 318 49.1
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 3.6e-63 246.1 352 47.4
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 3.9e-62 242.7 339 52.2
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 6.7e-62 241.9 314 49.0
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 1.1e-61 241.1 336 55.1
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 2.5e-61 240.0 323 58.5
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 3.3e-61 239.6 334 54.5
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 3.3e-61 239.6 334 54.5
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 5.7e-61 238.8 299 47.5
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 4.8e-60 235.7 339 54.3
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 3.1e-59 233.0 319 53.0
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 6.9e-59 231.9 258 54.3
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.2e-58 231.1 322 52.2
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 2.6e-58 229.9 309 50.5
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.6e-58 229.9 247 54.7
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 1.7e-57 227.3 338 47.3
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 5.0e-57 225.7 334 47.6
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 6.5e-57 225.3 236 55.9
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 2.5e-56 223.4 341 48.1
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 5.5e-56 222.2 241 54.4
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 7.2e-56 221.9 328 46.0
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 9.4e-56 221.5 215 56.7
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 1.2e-55 221.1 241 53.9
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 1.6e-55 220.7 261 51.0
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 7.9e-55 218.4 467 37.3
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 7.9e-55 218.4 467 37.3
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.4e-54 217.6 317 45.7
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 3.9e-54 216.1 322 45.3
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 2.6e-53 213.4 310 55.2
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 9.7e-53 211.5 321 44.2
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 8.2e-52 208.4 326 52.8
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 8.2e-52 208.4 318 54.4
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 6.9e-51 205.3 305 55.1
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 5.9e-50 202.2 496 37.1
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 2.2e-49 200.3 297 44.8
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.2e-47 194.5 247 47.0
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 1.6e-47 194.1 212 53.8
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 3.9e-46 189.5 204 53.4
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 8.8e-46 188.3 320 42.5
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 8.8e-46 188.3 330 43.6
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 7.4e-45 185.3 231 47.6
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 2.2e-44 183.7 318 42.1
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 4.8e-44 182.6 98 85.7
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 1.2e-42 177.9 297 41.4
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 1.9e-40 170.6 186 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 1.2e-37 161.4 156 55.8
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 1.2e-37 161.4 196 48.5
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 2.0e-37 160.6 113 68.1
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 3.3e-37 159.8 308 40.6
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 1.8e-35 154.1 277 38.6
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 2.4e-35 153.7 230 61.3
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 9.1e-35 151.8 180 48.3
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.8e-30 137.5 259 40.9
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 2.3e-25 120.6 186 57.0
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 3.6e-23 113.2 64 81.2
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 6.1e-23 112.5 74 74.3
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.3e-22 110.5 168 38.1
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 1.2e-21 108.2 200 48.0
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 2.8e-20 103.6 77 55.8
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 4.9e-20 102.8 64 71.9
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 7.0e-19 99.0 69 71.0
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.9e-17 93.6 243 42.0
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 5.2e-14 82.8 51 72.5
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 1.2e-13 81.6 192 38.5
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 1.8e-11 74.3 67 52.2
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.0e-09 68.6 89 47.2
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 8.6e-09 65.5 123 45.5
Gohir.A07G173840 Gossypium hirsutum HOM05D004969 ORTHO05D006085 4.7e-07 59.7 151 37.1
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 2.3e-06 57.4 52 53.8


User provided reference genes

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