Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.243BFB Arachis hypogaea HOM05D001779 ORTHO05D001753 2.8e-79 298.5 147 100.0
arahy.Tifrunner.gnm1.ann1.4TV6QC Arachis hypogaea HOM05D001779 ORTHO05D001753 1.7e-52 209.5 109 95.4
Psat5g209840 Pisum sativum HOM05D001779 ORTHO05D001753 1.1e-30 137.1 101 69.3
Ca_19095_v3 Cicer arietinum L. HOM05D001779 ORTHO05D001753 1.3e-28 130.2 99 66.7
Lj3g0021087 Lotus japonicus HOM05D001779 ORTHO05D001753 1.6e-26 123.2 99 64.6
Lalb_Chr25g0282471 Lupinus albus HOM05D001779 ORTHO05D001753 3.6e-26 122.1 104 61.5
Medtr3g033040 Medicago truncatula HOM05D001779 ORTHO05D001753 6.8e-25 117.9 101 60.4
TPR.G28387 Trifolium pratense HOM05D001779 ORTHO05D001753 3.4e-24 115.5 101 59.4
TPR.G40073 Trifolium pratense HOM05D001779 ORTHO05D001753 3.4e-24 115.5 101 59.4
Glyma.14G007500 Glycine max HOM05D001779 ORTHO05D001753 2.0e-21 106.3 103 55.3
GSVIVG01032162001 Vitis vinifera HOM05D001779 ORTHO05D001753 4.0e-17 92.0 109 51.4
Actinidia19409 Actinidia chinensis HOM05D001779 ORTHO05D001753 5.2e-17 91.7 108 48.1
VMungo0647G1551 Vigna mungo HOM05D001779 ORTHO05D001753 4.4e-16 88.6 98 51.0
Haze_03158 Corylus avellana HOM05D001779 ORTHO05D001753 7.5e-16 87.8 79 58.2
Hma1.2p1_1399F.1_g280850 Hydrangea macrophylla HOM05D001779 ORTHO05D001753 7.5e-16 87.8 109 46.8
Dinv09324 Davidia involucrata HOM05D001779 ORTHO05D001753 9.8e-16 87.4 106 47.2
Phvul.008G285500 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 9.8e-16 87.4 98 49.0
CSS0039833 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 3.7e-15 85.5 108 46.3
Rhsim07G0058000 Rhododendron simsii HOM05D001779 ORTHO05D001753 6.3e-15 84.7 93 55.9
vmacro13689 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 6.3e-15 84.7 109 49.5
CSS0002295 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 8.3e-15 84.3 108 45.4
QL04p008865 Quercus lobata HOM05D001779 ORTHO05D001753 1.1e-14 84.0 83 54.2
CSS0004396 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 1.8e-14 83.2 108 45.4
CiPaw.14G002100 Carya illinoinensis HOM05D001779 ORTHO05D001753 1.8e-14 83.2 83 50.6
PGR031G1422 Punica granatum HOM05D001779 ORTHO05D001753 3.1e-14 82.4 96 46.9
TAR633G1986 Trochodendron aralioides HOM05D001779 ORTHO05D001753 9.2e-14 80.9 107 43.0
Manes.07G008000 Manihot esculenta HOM05D001779 ORTHO05D001753 1.2e-13 80.5 108 43.5
vmacro00260 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 4.5e-13 78.6 105 48.6
TAR633G2494 Trochodendron aralioides HOM05D001779 ORTHO05D001753 5.9e-13 78.2 107 43.0
Lj9A638T72 Lonicera japonica HOM05D001779 ORTHO05D001753 7.8e-13 77.8 108 44.4
Sabra09G0042900 Salix brachista HOM05D001779 ORTHO05D001753 7.8e-13 77.8 103 43.7
Ciclev10020011m.g Citrus clementina HOM05D001779 ORTHO05D001753 2.9e-12 75.9 98 49.0
CANSAT80G2404 Cannabis sativa HOM05D001779 ORTHO05D001753 6.6e-12 74.7 107 46.7
Nitab4.5_0001676g0060 Nicotiana tabacum HOM05D001779 ORTHO05D001753 1.1e-11 73.9 51 68.6
PGSC0003DMG400003133 Solanum tuberosum HOM05D001779 ORTHO05D001753 1.1e-11 73.9 69 56.5
TWI09G1636 Tripterygium wilfordii HOM05D001779 ORTHO05D001753 1.1e-11 73.9 107 43.0
Nitab4.5_0000087g0090 Nicotiana tabacum HOM05D001779 ORTHO05D001753 2.5e-11 72.8 51 68.6
CAN.G50.4 Capsicum annuum HOM05D001779 ORTHO05D001753 3.3e-11 72.4 51 68.6
AUR62009402 Chenopodium quinoa HOM05D001779 ORTHO05D001753 3.3e-11 72.4 108 45.4
AUR62023085 Chenopodium quinoa HOM05D001779 ORTHO05D001753 3.3e-11 72.4 108 43.5
Sed0001001 Sechium edule HOM05D001779 ORTHO05D001753 4.3e-11 72.0 93 45.2
AT3G53170 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 5.6e-11 71.6 105 46.7
ClCG09G003940 Citrullus lanatus HOM05D001779 ORTHO05D001753 5.6e-11 71.6 125 42.4
Eucgr.G03360 Eucalyptus grandis HOM05D001779 ORTHO05D001753 5.6e-11 71.6 103 44.7
THA.LOC104826684 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 5.6e-11 71.6 86 46.5
CsaV3_7G030850 Cucumis sativus L. HOM05D001779 ORTHO05D001753 1.2e-10 70.5 94 47.9
Migut.N01786 Erythranthe guttata HOM05D001779 ORTHO05D001753 1.2e-10 70.5 76 53.9
MELO3C023572.2 Cucumis melo HOM05D001779 ORTHO05D001753 1.6e-10 70.1 94 46.8
Thhalv10011131m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 1.6e-10 70.1 104 46.2
Atru.chr11.2583 Acer truncatum HOM05D001779 ORTHO05D001753 2.8e-10 69.3 52 63.5
Cc02_g28360 Coffea canephora HOM05D001779 ORTHO05D001753 2.8e-10 69.3 109 41.3
Hund15421 Selenicereus undatus HOM05D001779 ORTHO05D001753 2.8e-10 69.3 57 61.4
CDE04G3359 Ceratophyllum demersum HOM05D001779 ORTHO05D001753 3.6e-10 68.9 51 64.7
Solyc08g045780.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 3.6e-10 68.9 59 57.6
Sopen08g013850 Solanum pennellii HOM05D001779 ORTHO05D001753 3.6e-10 68.9 59 57.6
AL5G34050 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 4.7e-10 68.6 59 62.7
Duzib133G0213 Durio zibethinus HOM05D001779 ORTHO05D001753 4.7e-10 68.6 99 47.5
Carub.0005s1970 Capsella rubella HOM05D001779 ORTHO05D001753 8.0e-10 67.8 105 43.8
Peaxi162Scf00071g01040 Petunia axillaris HOM05D001779 ORTHO05D001753 8.0e-10 67.8 51 60.8
Sp5g09160 Schrenkiella parvula HOM05D001779 ORTHO05D001753 1.4e-09 67.0 44 70.5
COL.COLO4_04875 Corchorus olitorius HOM05D001779 ORTHO05D001753 1.8e-09 66.6 50 68.0
MD02G1305700 Malus domestica HOM05D001779 ORTHO05D001753 1.8e-09 66.6 107 38.3
MD02G1306000 Malus domestica HOM05D001779 ORTHO05D001753 1.8e-09 66.6 107 38.3
CARHR163140 Cardamine hirsuta HOM05D001779 ORTHO05D001753 2.3e-09 66.2 45 68.9
SGA_v2.0_scaffold36G14402 Striga asiatica HOM05D001779 ORTHO05D001753 3.1e-09 65.9 48 68.8
Gohir.A08G055001 Gossypium hirsutum HOM05D001779 ORTHO05D001753 4.0e-09 65.5 50 70.0
Gorai.004G066800 Gossypium raimondii HOM05D001779 ORTHO05D001753 4.0e-09 65.5 50 70.0
Prupe.2G019900 Prunus persica HOM05D001779 ORTHO05D001753 4.0e-09 65.5 107 40.2
RcHm_v2.0_Chr1g0317271 Rosa chinensis HOM05D001779 ORTHO05D001753 4.0e-09 65.5 74 47.3
Thecc.01G407600 Theobroma cacao HOM05D001779 ORTHO05D001753 4.0e-09 65.5 99 44.4
A09p46160 Brassica napus HOM05D001779 ORTHO05D001753 6.8e-09 64.7 47 63.8
BraA09t40080Z Brassica rapa HOM05D001779 ORTHO05D001753 6.8e-09 64.7 47 63.8
Gohir.D08G064500 Gossypium hirsutum HOM05D001779 ORTHO05D001753 8.9e-09 64.3 50 68.0
Sc14g0005010 Simmondsia chinensis HOM05D001779 ORTHO05D001753 8.9e-09 64.3 41 78.0
FvH4_7g01420 Fragaria vesca HOM05D001779 ORTHO05D001753 1.5e-08 63.5 117 40.2
FAN06G3831 Fragaria x ananassa HOM05D001779 ORTHO05D001753 1.5e-08 63.5 117 40.2
BcaC07g39673 Brassica carinata HOM05D001779 ORTHO05D001753 2.0e-08 63.2 47 61.7
C08p28390 Brassica napus HOM05D001779 ORTHO05D001753 2.0e-08 63.2 47 61.7
BolC8t50449H Brassica oleracea HOM05D001779 ORTHO05D001753 2.0e-08 63.2 47 61.7
MSTRG.5036 Avicennia marina HOM05D001779 ORTHO05D001753 3.4e-08 62.4 58 62.1
HanXRQChr16g0501781 Helianthus annuus HOM05D001779 ORTHO05D001753 3.4e-08 62.4 110 40.9
FAN10G0484 Fragaria x ananassa HOM05D001779 ORTHO05D001753 4.4e-08 62.0 68 50.0
SalBow6G2927 Salvia bowleyana HOM05D001779 ORTHO05D001753 4.4e-08 62.0 48 62.5
FAN03G3349 Fragaria x ananassa HOM05D001779 ORTHO05D001753 5.8e-08 61.6 68 50.0
Lsat_1_v5_gn_4_115801 Lactuca sativa HOM05D001779 ORTHO05D001753 7.5e-08 61.2 110 39.1
EL10Ac2g04350 Beta vulgaris HOM05D001779 ORTHO05D001753 1.3e-07 60.5 108 42.6
FAN01G1074 Fragaria x ananassa HOM05D001779 ORTHO05D001753 3.7e-07 58.9 43 65.1
EL10Ac2g03860 Beta vulgaris HOM05D001779 ORTHO05D001753 6.4e-07 58.2 43 62.8
PSO782G1225 Papaver somniferum HOM05D001779 ORTHO05D001753 2.4e-06 56.2 47 63.8
EL10Ac9g20931 Beta vulgaris HOM05D000308 ORTHO05D001753 5.4e-06 55.1 43 58.1
PSO063G6602 Papaver somniferum HOM05D001779 ORTHO05D001753 9.2e-06 54.3 47 61.7


User provided reference genes

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