Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 8.4e-224 780.0 388 100.0
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 1.6e-97 360.5 234 79.9
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 3.9e-96 355.9 237 78.9
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 5.1e-96 355.5 236 78.0
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 1.4e-93 347.4 234 75.2
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 3.1e-93 346.3 234 75.2
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 2.2e-91 340.1 236 75.8
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 2.5e-87 326.6 235 73.6
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 4.8e-86 322.4 226 72.6
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 4.8e-86 322.4 226 72.6
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 8.1e-86 321.6 236 73.3
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 1.1e-85 321.2 241 70.5
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 1.1e-85 321.2 226 72.6
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.8e-85 320.5 236 71.2
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 6.9e-85 318.5 236 69.9
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 9.0e-85 318.2 236 70.3
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.6e-84 316.6 236 70.8
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.7e-83 313.9 238 69.3
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 5.5e-82 308.9 221 71.0
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.2e-81 307.8 238 69.3
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 1.6e-81 307.4 227 69.6
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.6e-81 307.4 230 70.9
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.1e-81 307.0 230 70.4
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 2.1e-81 307.0 188 79.3
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 2.7e-81 306.6 230 70.9
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 6.0e-81 305.4 239 68.2
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 6.0e-81 305.4 236 67.4
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 7.9e-81 305.1 233 69.1
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.0e-80 304.7 205 72.2
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.0e-80 304.7 209 72.2
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 1.3e-80 304.3 236 66.9
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.8e-80 303.9 240 65.8
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 1.8e-80 303.9 227 69.2
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 1.8e-80 303.9 223 68.6
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 3.0e-80 303.1 238 67.2
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 3.9e-80 302.8 234 72.2
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 8.7e-80 301.6 238 67.6
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 1.9e-79 300.4 214 70.6
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 3.3e-79 299.7 188 75.5
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.3e-79 299.7 230 67.8
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 4.3e-79 299.3 220 67.3
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 4.3e-79 299.3 238 65.5
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 7.4e-79 298.5 238 67.2
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 2.8e-78 296.6 232 67.2
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 2.8e-78 296.6 232 67.2
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 4.8e-78 295.8 233 67.8
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.1e-77 294.7 189 73.0
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.4e-77 294.3 188 72.9
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 1.4e-77 294.3 233 67.4
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.8e-77 293.9 239 65.7
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.1e-77 293.1 188 72.9
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.2e-76 291.2 236 66.1
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 3.4e-76 289.7 221 66.5
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 7.6e-76 288.5 237 65.0
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 1.3e-75 287.7 234 63.2
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 2.2e-75 287.0 237 65.0
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 3.8e-75 286.2 202 68.8
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 4.9e-75 285.8 204 71.1
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 6.5e-75 285.4 202 69.8
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 8.4e-75 285.0 182 75.8
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.4e-74 284.3 207 66.7
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.4e-74 284.3 222 66.7
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 1.9e-74 283.9 229 63.3
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 1.9e-74 283.9 229 63.3
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 5.5e-74 282.3 190 71.1
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 5.5e-74 282.3 230 63.0
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.2e-73 281.2 204 70.1
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.6e-73 280.8 230 61.7
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 3.5e-73 279.6 233 63.9
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 4.6e-73 279.3 230 61.3
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 1.0e-72 278.1 197 68.5
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 1.3e-72 277.7 211 66.8
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 2.3e-72 276.9 229 62.4
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 3.0e-72 276.6 230 61.3
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 3.0e-72 276.6 229 62.4
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 3.0e-72 276.6 229 62.4
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 5.1e-72 275.8 236 61.4
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 5.1e-72 275.8 234 64.1
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.1e-71 274.6 239 61.9
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 1.5e-71 274.2 211 66.4
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.9e-71 273.9 175 73.7
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 3.3e-71 273.1 230 63.9
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 4.3e-71 272.7 226 64.2
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 4.3e-71 272.7 237 62.0
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 5.7e-71 272.3 212 67.0
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 9.7e-71 271.6 180 75.0
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.3e-70 271.2 217 66.8
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 2.2e-70 270.4 234 64.5
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 2.8e-70 270.0 229 63.8
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 3.7e-70 269.6 180 73.3
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 1.1e-69 268.1 208 64.9
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.1e-69 268.1 229 60.3
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 4.1e-69 266.2 186 70.4
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 6.9e-69 265.4 236 61.0
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 1.2e-68 264.6 215 65.1
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.5e-68 264.2 206 66.0
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 2.7e-65 253.4 181 68.5
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 5.1e-64 249.2 179 65.9
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.5e-63 247.7 176 68.8
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 4.3e-63 246.1 223 57.4
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 1.3e-62 244.6 215 58.6
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 2.8e-62 243.4 212 59.4
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 4.8e-62 242.7 234 57.7
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.5e-60 237.7 180 63.3
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 8.5e-59 231.9 180 62.8
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 1.1e-58 231.5 178 62.4
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 5.7e-55 219.2 145 70.3
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 1.8e-53 214.2 177 64.4
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.8e-46 190.3 146 62.3
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.8e-46 190.3 147 61.2
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 4.8e-46 189.5 146 61.6
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 8.2e-46 188.7 147 60.5
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.8e-45 187.6 146 60.3
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 2.4e-45 187.2 147 59.9
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 7.0e-45 185.7 147 59.2
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 7.0e-45 185.7 147 59.9
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 7.0e-45 185.7 147 59.2
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 7.0e-45 185.7 147 59.2
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 7.0e-45 185.7 143 61.5
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 9.1e-45 185.3 147 59.2
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 9.1e-45 185.3 147 59.2
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 9.1e-45 185.3 146 60.3
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 1.2e-44 184.9 126 74.6
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 4.5e-44 183.0 145 58.6
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 4.5e-44 183.0 186 49.5
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.5e-42 177.9 146 56.2
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 5.5e-42 176.0 126 73.0
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 9.4e-42 175.3 235 46.4
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.8e-40 171.0 163 50.9
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 2.0e-36 157.5 155 49.7
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.7e-36 157.1 102 73.5
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 1.7e-35 154.5 114 66.7
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 1.1e-34 151.8 104 69.2
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 2.4e-29 134.0 135 54.1
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 1.2e-28 131.7 160 43.8
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.9e-28 129.4 186 40.9
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 6.6e-27 125.9 235 39.6
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 8.6e-27 125.6 146 43.2
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 2.5e-26 124.0 88 67.0
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 7.2e-26 122.5 189 38.1
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 4.7e-25 119.8 135 52.6
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 4.9e-22 109.8 202 37.6
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 2.0e-20 104.4 195 33.8
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 7.8e-20 102.4 150 36.7
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 7.8e-20 102.4 100 55.0
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 8.6e-19 99.0 234 35.9
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 1.1e-18 98.6 71 62.0
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 2.5e-18 97.4 155 34.8
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 8.0e-17 92.4 59 76.3
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 9.8e-15 85.5 83 56.6
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 1.4e-13 81.6 85 55.3
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 7.8e-12 75.9 104 39.4
arahy.Tifrunner.gnm1.ann1.IMYT90 Arachis hypogaea HOM05D007504 ORTHO05D007629 1.3e-11 75.1 40 87.5
Hma1.2p1_1893F.1_g306730 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 6.8e-08 62.8 59 50.8
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.7e-06 57.0 84 36.9
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.7e-06 57.0 84 36.9


User provided reference genes

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