Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.23SP7E Arachis hypogaea HOM05D003784 ORTHO05D004345 1.3e-78 296.2 139 100.0
arahy.Tifrunner.gnm1.ann1.9FD3VR Arachis hypogaea HOM05D003784 ORTHO05D004345 8.5e-70 266.9 145 89.7
arahy.Tifrunner.gnm1.ann1.VPW534 Arachis hypogaea HOM05D003784 ORTHO05D004345 8.5e-70 266.9 145 89.7
arahy.Tifrunner.gnm1.ann1.46601I Arachis hypogaea HOM05D003784 ORTHO05D004345 1.5e-69 266.2 145 89.0
arahy.Tifrunner.gnm1.ann1.V4GG8W Arachis hypogaea HOM05D003784 ORTHO05D004345 1.5e-69 266.2 145 89.0
arahy.Tifrunner.gnm1.ann1.2UK2LN Arachis hypogaea HOM05D003784 ORTHO05D004345 4.2e-69 264.6 145 88.3
Ca_04758_v3 Cicer arietinum L. HOM05D003784 ORTHO05D004345 2.6e-66 255.4 145 84.1
Lalb_Chr10g0098081 Lupinus albus HOM05D003784 ORTHO05D004345 4.4e-66 254.6 145 84.1
Glyma.01G044200 Glycine max HOM05D003784 ORTHO05D004345 1.7e-65 252.7 145 83.4
Glyma.02G019400 Glycine max HOM05D003784 ORTHO05D004345 1.7e-65 252.7 145 83.4
Lalb_Chr17g0340481 Lupinus albus HOM05D003784 ORTHO05D004345 1.7e-65 252.7 145 83.4
Lj2g0024025 Lotus japonicus HOM05D003784 ORTHO05D004345 2.2e-65 252.3 145 83.4
Gohir.A13G072400 Gossypium hirsutum HOM05D003784 ORTHO05D004345 2.8e-65 251.9 145 82.8
Gorai.013G083200 Gossypium raimondii HOM05D003784 ORTHO05D004345 3.7e-65 251.5 145 82.1
arahy.Tifrunner.gnm1.ann1.XG19R5 Arachis hypogaea HOM05D003784 ORTHO05D004345 8.3e-65 250.4 145 85.5
Cpa.g.sc183.26 Carica papaya HOM05D003784 ORTHO05D004345 8.3e-65 250.4 145 82.1
TPR.G4021 Trifolium pratense HOM05D003784 ORTHO05D004345 8.3e-65 250.4 145 82.8
Medtr5g038900 Medicago truncatula HOM05D003784 ORTHO05D004345 1.1e-64 250.0 145 82.8
Sed0017884 Sechium edule HOM05D003784 ORTHO05D004345 1.1e-64 250.0 145 80.7
Thecc.02G352000 Theobroma cacao HOM05D003784 ORTHO05D004345 1.1e-64 250.0 145 81.4
ClCG05G024480 Citrullus lanatus HOM05D003784 ORTHO05D004345 1.4e-64 249.6 145 81.4
MELO3C012076.2 Cucumis melo HOM05D003784 ORTHO05D004345 1.4e-64 249.6 145 81.4
CsaV3_5G032480 Cucumis sativus L. HOM05D003784 ORTHO05D004345 1.4e-64 249.6 145 81.4
CiPaw.05G138300 Carya illinoinensis HOM05D003784 ORTHO05D004345 1.8e-64 249.2 145 81.4
Duzib251G0232 Durio zibethinus HOM05D003784 ORTHO05D004345 1.8e-64 249.2 145 80.7
Manes.01G188100 Manihot esculenta HOM05D003784 ORTHO05D004345 2.4e-64 248.8 145 81.4
Manes.05G101600 Manihot esculenta HOM05D003784 ORTHO05D004345 2.4e-64 248.8 145 81.4
Phvul.002G089000 Phaseolus vulgaris HOM05D003784 ORTHO05D004345 3.1e-64 248.4 145 82.1
COL.COLO4_22969 Corchorus olitorius HOM05D003784 ORTHO05D004345 5.4e-64 247.7 145 80.7
Duzib268G0480 Durio zibethinus HOM05D003784 ORTHO05D004345 7.0e-64 247.3 145 80.7
PGR102G1616 Punica granatum HOM05D003784 ORTHO05D004345 7.0e-64 247.3 145 80.7
Psat2g121920 Pisum sativum HOM05D003784 ORTHO05D004345 1.2e-63 246.5 145 81.4
FvH4_4g31670 Fragaria vesca HOM05D003784 ORTHO05D004345 1.6e-63 246.1 145 81.4
FAN07G0095 Fragaria x ananassa HOM05D003784 ORTHO05D004345 1.6e-63 246.1 145 81.4
FAN12G3834 Fragaria x ananassa HOM05D003784 ORTHO05D004345 1.6e-63 246.1 145 81.4
FAN17G0203 Fragaria x ananassa HOM05D003784 ORTHO05D004345 1.6e-63 246.1 145 81.4
FAN22G2192 Fragaria x ananassa HOM05D003784 ORTHO05D004345 1.6e-63 246.1 145 81.4
RcHm_v2.0_Chr4g0440181 Rosa chinensis HOM05D003784 ORTHO05D004345 1.6e-63 246.1 145 81.4
CiPaw.06G082300 Carya illinoinensis HOM05D003784 ORTHO05D004345 2.0e-63 245.7 145 80.0
MD13G1076000 Malus domestica HOM05D003784 ORTHO05D004345 2.0e-63 245.7 145 81.4
Nitab4.5_0000141g0330 Nicotiana tabacum HOM05D003784 ORTHO05D004345 2.0e-63 245.7 145 80.7
Potri.006G110500 Populus trichocarpa HOM05D003784 ORTHO05D004345 2.0e-63 245.7 145 80.0
TAR629G2331 Trochodendron aralioides HOM05D003784 ORTHO05D004345 2.0e-63 245.7 145 80.7
MD16G1076200 Malus domestica HOM05D003784 ORTHO05D004345 2.7e-63 245.4 145 80.7
Nn3g17165 Nelumbo nucifera HOM05D003784 ORTHO05D004345 2.7e-63 245.4 145 78.6
Nn4g23086 Nelumbo nucifera HOM05D003784 ORTHO05D004345 7.7e-63 243.8 145 80.0
VMungo1215G1164 Vigna mungo HOM05D003784 ORTHO05D004345 7.7e-63 243.8 145 80.0
Cfa009009 Carpinus fangiana HOM05D003784 ORTHO05D004345 1.0e-62 243.4 145 80.0
Haze_12038 Corylus avellana HOM05D003784 ORTHO05D004345 1.0e-62 243.4 145 80.0
TWI23G0896 Tripterygium wilfordii HOM05D003784 ORTHO05D004345 1.3e-62 243.0 145 80.0
CANSAT64G0696 Cannabis sativa HOM05D003784 ORTHO05D004345 1.7e-62 242.7 145 78.6
Solyc01g010650.3 Solanum lycopersicum HOM05D003784 ORTHO05D004345 1.7e-62 242.7 145 80.0
Sopen01g006280 Solanum pennellii HOM05D003784 ORTHO05D004345 1.7e-62 242.7 145 80.0
Dinv24971 Davidia involucrata HOM05D003784 ORTHO05D004345 2.2e-62 242.3 145 79.3
Dinv34176 Davidia involucrata HOM05D003784 ORTHO05D004345 2.2e-62 242.3 145 80.0
Ciclev10032069m.g Citrus clementina HOM05D003784 ORTHO05D004345 2.9e-62 241.9 145 77.9
Prupe.1G270800 Prunus persica HOM05D003784 ORTHO05D004345 2.9e-62 241.9 145 80.7
GSVIVG01020040001 Vitis vinifera HOM05D003784 ORTHO05D004345 2.9e-62 241.9 145 79.3
Atru.chr11.1836 Acer truncatum HOM05D003784 ORTHO05D004345 5.0e-62 241.1 145 78.6
Carub.0001s1406 Capsella rubella HOM05D003784 ORTHO05D004345 5.0e-62 241.1 145 78.6
Nitab4.5_0007777g0010 Nicotiana tabacum HOM05D003784 ORTHO05D004345 5.0e-62 241.1 145 79.3
SGA_v2.0_scaffold302G47843 Striga asiatica HOM05D003784 ORTHO05D004345 6.5e-62 240.7 145 77.9
THA.LOC104824085 Tarenaya hassleriana HOM05D003784 ORTHO05D004345 6.5e-62 240.7 145 77.9
TAR374G1722 Trochodendron aralioides HOM05D003784 ORTHO05D004345 6.5e-62 240.7 145 78.6
AL1G26250 Arabidopsis lyrata HOM05D003784 ORTHO05D004345 8.5e-62 240.4 145 78.6
AT1G14360 Arabidopsis thaliana HOM05D003784 ORTHO05D004345 8.5e-62 240.4 145 78.6
BcaC05g25335 Brassica carinata HOM05D003784 ORTHO05D004345 8.5e-62 240.4 145 78.6
CARHR014800 Cardamine hirsuta HOM05D003784 ORTHO05D004345 8.5e-62 240.4 145 78.6
Thhalv10008161m.g Eutrema salsugineum HOM05D003784 ORTHO05D004345 8.5e-62 240.4 145 78.6
Peaxi162Scf00026g02810 Petunia axillaris HOM05D003784 ORTHO05D004345 8.5e-62 240.4 145 79.3
THA.LOC104805144 Tarenaya hassleriana HOM05D003784 ORTHO05D004345 8.5e-62 240.4 145 77.9
Lsat_1_v5_gn_8_53841 Lactuca sativa HOM05D003784 ORTHO05D004345 1.1e-61 240.0 145 77.2
MBI02_g05733_MAGBIO Magnolia biondii HOM05D003784 ORTHO05D004345 1.1e-61 240.0 145 80.7
MD07G1011400 Malus domestica HOM05D003784 ORTHO05D004345 1.1e-61 240.0 145 79.3
Nitab4.5_0012600g0020 Nicotiana tabacum HOM05D003784 ORTHO05D004345 1.1e-61 240.0 145 78.6
PSO591G0079 Papaver somniferum HOM05D003784 ORTHO05D004345 1.1e-61 240.0 145 79.3
PSO832G3994 Papaver somniferum HOM05D003784 ORTHO05D004345 1.1e-61 240.0 145 79.3
MSTRG.682 Avicennia marina HOM05D003784 ORTHO05D004345 1.5e-61 239.6 145 77.2
Potri.016G139100 Populus trichocarpa HOM05D003784 ORTHO05D004345 1.5e-61 239.6 145 77.9
SGA_v2.0_scaffold53G19437 Striga asiatica HOM05D003784 ORTHO05D004345 1.5e-61 239.6 145 77.9
Aqoxy3G03325 Aquilegia oxysepala HOM05D003784 ORTHO05D004345 1.9e-61 239.2 145 78.6
Oeu000625.2 Olea europaea HOM05D003784 ORTHO05D004345 1.9e-61 239.2 145 77.2
PGSC0003DMG400000862 Solanum tuberosum HOM05D003784 ORTHO05D004345 1.9e-61 239.2 145 78.6
BcaB02g06486 Brassica carinata HOM05D003784 ORTHO05D004345 2.5e-61 238.8 145 77.9
BcaB08g34391 Brassica carinata HOM05D003784 ORTHO05D004345 2.5e-61 238.8 145 78.6
A09p62250 Brassica napus HOM05D003784 ORTHO05D004345 2.5e-61 238.8 145 78.6
C08p45770 Brassica napus HOM05D003784 ORTHO05D004345 2.5e-61 238.8 145 78.6
BolC8t52131H Brassica oleracea HOM05D003784 ORTHO05D004345 2.5e-61 238.8 145 78.6
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 2.5e-61 238.8 145 78.6
DCAR_027398 Daucus carota HOM05D003784 ORTHO05D004345 2.5e-61 238.8 145 78.6
Sp1g12730 Schrenkiella parvula HOM05D003784 ORTHO05D004345 2.5e-61 238.8 145 77.9
PGSC0003DMG400025616 Solanum tuberosum HOM05D003784 ORTHO05D004345 2.5e-61 238.8 145 77.9
Aa31LG1G680 Aethionema arabicum HOM05D003784 ORTHO05D004345 4.2e-61 238.0 145 77.9
BcaB07g30322 Brassica carinata HOM05D003784 ORTHO05D004345 5.5e-61 237.7 145 77.9
BcaC03g17169 Brassica carinata HOM05D003784 ORTHO05D004345 5.5e-61 237.7 145 77.9
A02p33120 Brassica napus HOM05D003784 ORTHO05D004345 5.5e-61 237.7 145 77.9
A06p10370 Brassica napus HOM05D003784 ORTHO05D004345 5.5e-61 237.7 145 77.9
C02p50920 Brassica napus HOM05D003784 ORTHO05D004345 5.5e-61 237.7 145 77.9
BolC2t11183H Brassica oleracea HOM05D003784 ORTHO05D004345 5.5e-61 237.7 145 77.9
BraA02t08335Z Brassica rapa HOM05D003784 ORTHO05D004345 5.5e-61 237.7 145 77.9
BraA06t24218Z Brassica rapa HOM05D003784 ORTHO05D004345 5.5e-61 237.7 145 77.9
AL5G12020 Arabidopsis lyrata HOM05D003784 ORTHO05D004345 7.2e-61 237.3 145 79.3
CARHR145250 Cardamine hirsuta HOM05D003784 ORTHO05D004345 7.2e-61 237.3 145 79.3
Actinidia08219 Actinidia chinensis HOM05D003784 ORTHO05D004345 9.4e-61 236.9 145 80.0
QL03p065037 Quercus lobata HOM05D003784 ORTHO05D004345 1.2e-60 236.5 145 78.6
vmacro09253 Vaccinium macrocarpon HOM05D003784 ORTHO05D004345 1.2e-60 236.5 145 77.2
Lj6A792T38 Lonicera japonica HOM05D003784 ORTHO05D004345 1.6e-60 236.1 145 78.6
Sc11g0001750 Simmondsia chinensis HOM05D003784 ORTHO05D004345 1.6e-60 236.1 145 78.6
Aa31LG2G7460 Aethionema arabicum HOM05D003784 ORTHO05D004345 2.1e-60 235.7 145 77.2
Thhalv10004564m.g Eutrema salsugineum HOM05D003784 ORTHO05D004345 2.1e-60 235.7 145 77.9
Solyc05g007150.4 Solanum lycopersicum HOM05D003784 ORTHO05D004345 2.1e-60 235.7 145 77.2
Sopen05g003110 Solanum pennellii HOM05D003784 ORTHO05D004345 2.1e-60 235.7 145 77.2
BolC5t29969H Brassica oleracea HOM05D003784 ORTHO05D004345 2.7e-60 235.3 145 76.6
CAN.G512.10 Capsicum annuum HOM05D003784 ORTHO05D004345 2.7e-60 235.3 145 77.2
Eucgr.B03416 Eucalyptus grandis HOM05D003784 ORTHO05D004345 2.7e-60 235.3 145 76.6
vmacro17528 Vaccinium macrocarpon HOM05D003784 ORTHO05D004345 3.6e-60 235.0 145 76.6
Carub.0005s0172 Capsella rubella HOM05D003784 ORTHO05D004345 4.7e-60 234.6 145 78.6
Peaxi162Scf01030g00013 Petunia axillaris HOM05D003784 ORTHO05D004345 4.7e-60 234.6 145 77.2
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 4.7e-60 234.6 145 77.9
Hund05900 Selenicereus undatus HOM05D003784 ORTHO05D004345 4.7e-60 234.6 145 77.2
C05p12160 Brassica napus HOM05D003784 ORTHO05D004345 6.1e-60 234.2 145 77.2
HPP92_009104 Vanilla planifolia HOM05D003784 ORTHO05D004345 6.1e-60 234.2 145 73.8
SalBow2G2925 Salvia bowleyana HOM05D003784 ORTHO05D004345 1.0e-59 233.4 145 75.9
vmacro23353 Vaccinium macrocarpon HOM05D003784 ORTHO05D004345 1.0e-59 233.4 145 75.9
AT2G02810 Arabidopsis thaliana HOM05D003784 ORTHO05D004345 1.4e-59 233.0 145 77.9
Hund25260 Selenicereus undatus HOM05D003784 ORTHO05D004345 2.3e-59 232.3 145 76.6
CSS0014710 Camellia sinensis var. sinensis HOM05D003784 ORTHO05D004345 3.0e-59 231.9 145 76.6
CSS0033561 Camellia sinensis var. sinensis HOM05D003784 ORTHO05D004345 3.0e-59 231.9 145 76.6
Migut.L01323 Erythranthe guttata HOM05D003784 ORTHO05D004345 3.0e-59 231.9 145 75.9
Rhsim12G0060900 Rhododendron simsii HOM05D003784 ORTHO05D004345 3.0e-59 231.9 145 75.2
SalBow2G2485 Salvia bowleyana HOM05D003784 ORTHO05D004345 4.0e-59 231.5 145 75.2
CSS0030862 Camellia sinensis var. sinensis HOM05D003784 ORTHO05D004345 5.2e-59 231.1 145 75.2
CDE04G2861 Ceratophyllum demersum HOM05D003784 ORTHO05D004345 5.2e-59 231.1 145 73.8
ECA246G4538 Erigeron canadensis HOM05D003784 ORTHO05D004345 5.2e-59 231.1 145 74.5
HanXRQChr17g0545081 Helianthus annuus HOM05D003784 ORTHO05D004345 6.8e-59 230.7 145 73.1
Lj3A1041T80 Lonicera japonica HOM05D003784 ORTHO05D004345 8.8e-59 230.3 144 75.0
EL10Ac6g13171 Beta vulgaris HOM05D003784 ORTHO05D004345 1.2e-58 229.9 145 74.5
unitig_26.g10312 Utricularia gibba HOM05D003784 ORTHO05D004345 1.2e-58 229.9 145 74.5
Ah.03g135330 Amaranthus hybridus HOM05D003784 ORTHO05D004345 3.4e-58 228.4 145 73.8
AUR62005743 Chenopodium quinoa HOM05D003784 ORTHO05D004345 7.5e-58 227.3 145 72.4
Cc11_g13340 Coffea canephora HOM05D003784 ORTHO05D004345 7.5e-58 227.3 145 74.5
Oeu045419.1 Olea europaea HOM05D003784 ORTHO05D004345 2.2e-57 225.7 135 78.5
ECA234G1012 Erigeron canadensis HOM05D003784 ORTHO05D004345 4.1e-56 221.5 145 69.7
AUR62028815 Chenopodium quinoa HOM05D003784 ORTHO05D004345 5.4e-56 221.1 145 71.0
HanXRQChr17g0570491 Helianthus annuus HOM05D003784 ORTHO05D004345 5.4e-56 221.1 145 70.3
Lsat_1_v5_gn_4_8641 Lactuca sativa HOM05D003784 ORTHO05D004345 5.4e-56 221.1 145 70.3
ATR0564G448 Amborella trichopoda HOM05D003784 ORTHO05D004345 2.7e-55 218.8 145 72.4
DCAR_017796 Daucus carota HOM05D003784 ORTHO05D004345 3.5e-55 218.4 145 72.4
Os06g0593100 Oryza sativa ssp. japonica HOM05D003784 ORTHO05D004345 7.7e-55 217.2 152 69.1
Nitab4.5_0003062g0080 Nicotiana tabacum HOM05D003784 ORTHO05D004345 1.3e-54 216.5 131 77.9
Gohir.D13G072500 Gossypium hirsutum HOM05D003784 ORTHO05D004345 6.6e-54 214.2 124 81.5
Sabra04G0155100 Salix brachista HOM05D003784 ORTHO05D004345 6.6e-54 214.2 192 58.3
arahy.Tifrunner.gnm1.ann1.5Y78DL Arachis hypogaea HOM05D003784 ORTHO05D004345 2.5e-53 212.2 112 91.1
Zm00001eb386020 Zea mays HOM05D003784 ORTHO05D004345 3.3e-53 211.8 152 67.1
CDE07G0123 Ceratophyllum demersum HOM05D003784 ORTHO05D004345 4.7e-52 208.0 132 72.0
SMO165G0026 Selaginella moellendorffii HOM05D003784 ORTHO05D004345 1.0e-51 206.8 145 70.3
SEGI_25531 Sequoiadendron giganteum HOM05D003784 ORTHO05D004345 2.6e-50 202.2 145 66.2
Zm00001eb277180 Zea mays HOM05D003784 ORTHO05D004345 7.5e-50 200.7 152 63.8
AagrBONN_evm.TU.Sc2ySwM_117.860 Anthoceros agrestis HOM05D003784 ORTHO05D004345 9.8e-50 200.3 144 65.3
Mapoly0006s0029 Marchantia polymorpha HOM05D003784 ORTHO05D004345 2.4e-48 195.7 145 67.6
Pp3c2_15920 Physcomitrium patens HOM05D003784 ORTHO05D004345 3.0e-46 188.7 145 63.4
CBR_g44614 Chara braunii HOM05D003784 ORTHO05D004345 1.1e-45 186.8 145 61.4
Zm00001eb277110 Zea mays HOM05D003784 ORTHO05D004345 7.3e-45 184.1 152 61.2
Sp2g13910 Schrenkiella parvula HOM05D003784 ORTHO05D004345 2.6e-42 175.6 110 75.5
Pp3c11_9530 Physcomitrium patens HOM05D003784 ORTHO05D004345 3.4e-42 175.3 145 58.6
CAN.G38.20 Capsicum annuum HOM05D003784 ORTHO05D004345 1.7e-38 162.9 140 62.1
arahy.Tifrunner.gnm1.ann1.6BI6KA Arachis hypogaea HOM05D003784 ORTHO05D004345 1.4e-32 143.3 71 88.7
Pp3c2_31960 Physcomitrium patens HOM05D003784 ORTHO05D004345 1.4e-32 143.3 145 47.6
Actinidia19859 Actinidia chinensis HOM05D003784 ORTHO05D004345 1.2e-31 140.2 78 79.5
Zm00001eb277140 Zea mays HOM05D003784 ORTHO05D004345 5.1e-30 134.8 145 51.0
arahy.Tifrunner.gnm1.ann1.XR1P03 Arachis hypogaea HOM05D003784 ORTHO05D004345 9.5e-29 130.6 77 83.1
CSS0016772 Camellia sinensis var. sinensis HOM05D003784 ORTHO05D004345 1.2e-28 130.2 99 67.7
Cre01.g032050 Chlamydomonas reinhardtii HOM05D003784 ORTHO05D004345 9.9e-26 120.6 151 43.7
MBI05_g00393_MAGBIO Magnolia biondii HOM05D003784 ORTHO05D004345 1.3e-25 120.2 71 76.1
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 1.1e-24 117.1 123 52.8
C09p34230 Brassica napus HOM05D003784 ORTHO05D004345 6.2e-20 101.3 103 56.3
BolC9t56267H Brassica oleracea HOM05D003784 ORTHO05D004345 6.2e-20 101.3 103 56.3
Glyma.18G123732 Glycine max HOM05D003784 ORTHO05D004345 2.5e-13 79.3 42 78.6
arahy.Tifrunner.gnm1.ann1.P8U5ZL Arachis hypogaea HOM05D000254 ORTHO05D000165 1.8e-11 73.2 38 81.6
Cfa026007 Carpinus fangiana HOM05D003784 ORTHO05D004345 7.6e-10 67.8 178 29.8
PRCOL_00006449 Prasinoderma coloniale HOM05D003784 ORTHO05D004345 9.9e-10 67.4 71 49.3


User provided reference genes

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