Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 0.0e+00 1322.4 726 100.0
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 6.3e-148 528.9 600 55.0
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 9.1e-147 525.0 597 53.9
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 1.5e-146 524.2 600 53.3
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 3.4e-146 523.1 594 54.0
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 3.4e-146 523.1 600 53.5
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.7e-145 520.8 600 51.5
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.2e-145 520.4 600 51.5
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 3.8e-145 519.6 600 51.8
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 6.5e-145 518.8 597 53.6
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 1.4e-144 517.7 600 54.7
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 9.4e-144 515.0 600 52.7
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 3.6e-143 513.1 597 53.9
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 4.7e-143 512.7 597 53.3
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 6.1e-143 512.3 600 54.0
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 8.8e-142 508.4 601 50.9
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 1.1e-141 508.1 598 52.7
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 1.1e-141 508.1 600 52.3
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 7.4e-141 505.4 612 51.1
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 9.7e-141 505.0 600 51.2
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 9.7e-141 505.0 598 52.3
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 1.7e-140 504.2 600 51.7
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 3.7e-140 503.1 600 51.0
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 1.1e-139 501.5 600 52.5
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 5.3e-139 499.2 600 51.7
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 7.0e-139 498.8 600 51.8
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.2e-138 498.0 600 50.0
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.5e-138 496.1 600 50.0
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 4.5e-138 496.1 617 50.4
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 1.0e-137 495.0 601 51.7
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.0e-137 495.0 601 51.7
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.3e-137 494.6 600 50.0
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.7e-137 494.2 612 47.2
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.7e-137 494.2 598 52.8
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.7e-137 494.2 598 52.8
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 2.9e-137 493.4 598 50.5
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 5.0e-137 492.7 612 47.1
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.5e-137 492.3 602 50.0
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 1.5e-136 491.1 596 52.0
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.9e-136 490.7 604 49.8
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 2.5e-136 490.3 598 51.0
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 3.2e-136 490.0 600 51.0
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.2e-136 490.0 597 50.4
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.2e-136 490.0 598 51.0
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 5.5e-136 489.2 601 50.4
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 5.5e-136 489.2 613 51.1
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.5e-136 489.2 598 50.8
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 7.2e-136 488.8 600 50.5
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 1.6e-135 487.6 601 51.4
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 3.6e-135 486.5 606 51.2
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 4.7e-135 486.1 596 51.5
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.4e-134 484.6 601 49.9
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.8e-134 484.2 598 51.8
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 4.0e-134 483.0 550 54.2
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 5.2e-134 482.6 599 49.7
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 5.2e-134 482.6 607 50.9
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 6.7e-134 482.3 600 49.0
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 8.8e-134 481.9 607 51.1
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.0e-133 480.7 601 49.9
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 2.0e-133 480.7 602 50.3
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 2.0e-133 480.7 602 50.3
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 2.0e-133 480.7 602 50.3
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 2.6e-133 480.3 598 50.7
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 2.6e-133 480.3 598 49.5
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 2.6e-133 480.3 603 52.2
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 7.5e-133 478.8 600 50.3
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 2.2e-132 477.2 610 49.2
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 3.7e-132 476.5 601 50.4
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 4.8e-132 476.1 599 50.1
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 4.8e-132 476.1 600 50.5
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 4.8e-132 476.1 601 50.6
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 4.8e-132 476.1 599 50.6
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.1e-131 474.9 601 50.1
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.4e-131 474.6 596 51.2
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.8e-131 474.2 601 49.3
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.8e-131 474.2 601 50.2
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 5.3e-131 472.6 598 48.2
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 5.3e-131 472.6 598 48.2
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 7.0e-131 472.2 601 50.9
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 9.1e-131 471.9 602 48.7
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.2e-130 471.5 600 50.0
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 3.5e-130 469.9 596 50.3
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 3.5e-130 469.9 602 50.3
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 2.2e-129 467.2 601 48.9
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 3.8e-129 466.5 597 50.1
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 2.5e-128 463.8 598 47.3
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 2.5e-128 463.8 598 48.8
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 3.2e-128 463.4 598 48.0
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 4.2e-128 463.0 601 49.1
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 9.4e-128 461.8 598 46.8
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 9.4e-128 461.8 597 50.6
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.6e-127 461.1 620 46.5
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 2.1e-127 460.7 618 48.7
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.7e-127 460.3 601 48.4
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.7e-127 459.5 595 48.6
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 6.1e-127 459.1 612 48.4
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 5.2e-126 456.1 598 51.3
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 8.8e-126 455.3 601 47.8
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 8.8e-126 455.3 601 48.3
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.5e-125 454.5 601 48.6
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 3.4e-125 453.4 598 48.7
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.8e-124 450.3 574 48.8
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.1e-123 448.4 599 46.1
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 1.3e-121 441.4 628 44.9
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 3.2e-120 436.8 599 48.6
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 1.2e-119 434.9 642 46.6
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.2e-117 428.3 597 43.6
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 2.0e-117 427.6 602 45.3
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 9.8e-117 425.2 600 43.2
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 5.9e-114 416.0 551 48.1
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.6e-113 412.5 584 45.9
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 6.6e-113 412.5 612 44.4
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 3.3e-112 410.2 551 44.3
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 3.3e-112 410.2 609 44.5
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 8.9e-110 402.1 613 44.2
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.3e-108 398.3 596 44.5
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 7.3e-104 382.5 597 44.9
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.6e-103 380.2 554 43.1
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.0e-102 378.6 467 52.9
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.7e-100 371.3 601 44.6
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 2.3e-97 360.9 532 45.9
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.4e-92 342.8 558 41.4
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 9.9e-85 318.9 471 45.9
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 2.5e-80 304.3 608 36.0
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.9e-75 288.1 602 35.2
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 3.3e-72 277.3 340 52.6
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 2.6e-69 267.7 602 35.7
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.6e-55 221.9 243 58.4
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 3.7e-55 220.7 609 27.6
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 3.7e-55 220.7 620 30.3
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.7e-31 141.0 137 54.7
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.1e-30 139.4 296 36.5
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 2.3e-25 121.7 94 60.6
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 2.6e-24 118.2 382 32.2
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 5.9e-21 107.1 77 64.9
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 1.7e-20 105.5 320 25.3
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 5.0e-20 104.0 77 63.6
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.5e-19 102.4 220 34.1
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 1.9e-19 102.1 127 48.0
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.8e-14 85.5 107 42.1
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.2e-10 72.8 59 62.7
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 8.8e-09 66.6 159 33.3
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.0e-08 65.5 42 73.8
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.2e-07 62.0 47 61.7
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 4.8e-07 60.8 64 45.3


User provided reference genes

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