Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.21PEZK Arachis hypogaea HOM05D003605 ORTHO05D004292 1.1e-50 203.0 99 100.0
arahy.Tifrunner.gnm1.ann1.7QDM7Z Arachis hypogaea HOM05D000001 ORTHO05D000003 2.3e-16 89.0 76 61.8
Phvul.002G262100 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 2.5e-15 85.5 67 67.2
arahy.Tifrunner.gnm1.ann1.RRG4JE Arachis hypogaea HOM05D003605 ORTHO05D004292 3.3e-15 85.1 67 71.6
Glyma.08G138800 Glycine max HOM05D003605 ORTHO05D004292 5.6e-15 84.3 97 52.6
Lj4g0017562 Lotus japonicus HOM05D003605 ORTHO05D004292 5.6e-15 84.3 67 67.2
arahy.Tifrunner.gnm1.ann1.8A1TPW Arachis hypogaea HOM05D003605 ORTHO05D004292 7.3e-15 84.0 67 71.6
VMungo0251G1785 Vigna mungo HOM05D003605 ORTHO05D004292 9.5e-15 83.6 67 65.7
MD01G1024400 Malus domestica HOM05D003605 ORTHO05D004292 1.2e-14 83.2 67 67.2
MD15G1329000 Malus domestica HOM05D003605 ORTHO05D004292 1.6e-14 82.8 92 56.5
ECA232G1065 Erigeron canadensis HOM05D003605 ORTHO05D004292 2.1e-14 82.4 69 62.3
Duzib264G0977 Durio zibethinus HOM05D003605 ORTHO05D004292 2.8e-14 82.0 74 64.9
Hma1.2p1_0011F.1_g007160 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 2.8e-14 82.0 67 68.7
Hma1.2p1_0614F.1_g189540 Hydrangea macrophylla HOM05D003605 ORTHO05D004292 2.8e-14 82.0 67 68.7
Glyma.11G238200 Glycine max HOM05D003605 ORTHO05D004292 3.6e-14 81.6 71 62.0
Prupe.6G179700 Prunus persica HOM05D003605 ORTHO05D004292 4.7e-14 81.3 92 55.4
HanXRQChr09g0260211 Helianthus annuus HOM05D003605 ORTHO05D004292 6.2e-14 80.9 67 62.7
Lj6g0022585 Lotus japonicus HOM05D003605 ORTHO05D004292 6.2e-14 80.9 67 62.7
Peaxi162Scf00183g01421 Petunia axillaris HOM05D003605 ORTHO05D004292 6.2e-14 80.9 69 62.3
Solyc04g054710.3 Solanum lycopersicum HOM05D003605 ORTHO05D004292 6.2e-14 80.9 67 67.2
TPR.G2157 Trifolium pratense HOM05D003605 ORTHO05D004292 6.2e-14 80.9 67 64.2
GSVIVG01008982001 Vitis vinifera HOM05D003605 ORTHO05D004292 6.2e-14 80.9 67 65.7
Cc07_g15560 Coffea canephora HOM05D003605 ORTHO05D004292 8.1e-14 80.5 67 62.7
Duzib147G1273 Durio zibethinus HOM05D003605 ORTHO05D004292 8.1e-14 80.5 67 67.2
Glyma.05G181000 Glycine max HOM05D003605 ORTHO05D004292 8.1e-14 80.5 67 65.7
Psat7g053000 Pisum sativum HOM05D003605 ORTHO05D004292 8.1e-14 80.5 67 62.7
PGR004G1268 Punica granatum HOM05D003605 ORTHO05D004292 8.1e-14 80.5 96 53.1
Thecc.01G106100 Theobroma cacao HOM05D003605 ORTHO05D004292 8.1e-14 80.5 67 67.2
MSTRG.23329 Avicennia marina HOM05D003605 ORTHO05D004292 1.1e-13 80.1 71 63.4
CiPaw.03G138800 Carya illinoinensis HOM05D003605 ORTHO05D004292 1.1e-13 80.1 96 51.0
Migut.H02387 Erythranthe guttata HOM05D003605 ORTHO05D004292 1.1e-13 80.1 71 63.4
Gohir.A13G028200 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.1e-13 80.1 67 67.2
Gohir.D13G027000 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.1e-13 80.1 67 67.2
Gorai.013G030300 Gossypium raimondii HOM05D003605 ORTHO05D004292 1.1e-13 80.1 67 67.2
TWI53G0811 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 1.1e-13 80.1 67 62.7
TWI77G0071 Tripterygium wilfordii HOM05D003605 ORTHO05D004292 1.1e-13 80.1 67 62.7
Cpa.g.sc20.227 Carica papaya HOM05D003605 ORTHO05D004292 1.4e-13 79.7 67 67.2
Ciclev10025279m.g Citrus clementina HOM05D003605 ORTHO05D004292 1.4e-13 79.7 67 65.7
DCAR_032171 Daucus carota HOM05D003605 ORTHO05D004292 1.4e-13 79.7 69 62.3
Eucgr.I00463 Eucalyptus grandis HOM05D003605 ORTHO05D004292 1.4e-13 79.7 92 54.3
Nn5g29013 Nelumbo nucifera HOM05D003605 ORTHO05D004292 1.4e-13 79.7 67 64.2
Nitab4.5_0000214g0060 Nicotiana tabacum HOM05D003605 ORTHO05D004292 1.4e-13 79.7 67 65.7
Sc04g0003290 Simmondsia chinensis HOM05D003605 ORTHO05D004292 1.4e-13 79.7 92 54.3
CANSAT01G2754 Cannabis sativa HOM05D003605 ORTHO05D004292 1.8e-13 79.3 67 64.2
ECA232G4497 Erigeron canadensis HOM05D003605 ORTHO05D004292 1.8e-13 79.3 69 58.0
Phvul.001G250600 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 1.8e-13 79.3 67 61.2
Potri.007G088426 Populus trichocarpa HOM05D003605 ORTHO05D004292 1.8e-13 79.3 67 65.7
Sopen04g024460 Solanum pennellii HOM05D003605 ORTHO05D004292 1.8e-13 79.3 67 65.7
PGSC0003DMG400027919 Solanum tuberosum HOM05D003605 ORTHO05D004292 1.8e-13 79.3 67 65.7
vmacro18616 Vaccinium macrocarpon HOM05D003605 ORTHO05D004292 1.8e-13 79.3 67 62.7
CAN.G878.8 Capsicum annuum HOM05D003605 ORTHO05D004292 2.3e-13 79.0 67 64.2
Atru.chr1.3714 Acer truncatum HOM05D003605 ORTHO05D004292 3.1e-13 78.6 67 61.2
Atru.chr4.227 Acer truncatum HOM05D003605 ORTHO05D004292 3.1e-13 78.6 67 61.2
arahy.Tifrunner.gnm1.ann1.28TKL1 Arachis hypogaea HOM05D003605 ORTHO05D004292 3.1e-13 78.6 67 61.2
HanXRQChr15g0484161 Helianthus annuus HOM05D003605 ORTHO05D004292 3.1e-13 78.6 67 62.7
Oeu051794.2 Olea europaea HOM05D003605 ORTHO05D004292 3.1e-13 78.6 67 65.7
Oeu053564.1 Olea europaea HOM05D003605 ORTHO05D004292 3.1e-13 78.6 71 63.4
GSVIVG01022163001 Vitis vinifera HOM05D003605 ORTHO05D004292 3.1e-13 78.6 67 62.7
CiPaw.04G096600 Carya illinoinensis HOM05D003605 ORTHO05D004292 4.0e-13 78.2 67 61.2
Dinv16312 Davidia involucrata HOM05D003605 ORTHO05D004292 5.2e-13 77.8 67 62.7
Eucgr.I00395 Eucalyptus grandis HOM05D003605 ORTHO05D004292 5.2e-13 77.8 67 62.7
Manes.12G138300 Manihot esculenta HOM05D003605 ORTHO05D004292 5.2e-13 77.8 67 61.2
Glyma.11G238300 Glycine max HOM05D003605 ORTHO05D004292 6.8e-13 77.4 67 61.2
Lsat_1_v5_gn_4_141440 Lactuca sativa HOM05D003605 ORTHO05D004292 6.8e-13 77.4 92 52.2
Oeu032173.1 Olea europaea HOM05D003605 ORTHO05D004292 6.8e-13 77.4 71 60.6
Potri.005G079200 Populus trichocarpa HOM05D003605 ORTHO05D004292 6.8e-13 77.4 67 64.2
Rhsim08G0008700 Rhododendron simsii HOM05D003605 ORTHO05D004292 6.8e-13 77.4 67 59.7
VMungo1383G3703 Vigna mungo HOM05D003605 ORTHO05D004292 6.8e-13 77.4 67 59.7
QL02p032424 Quercus lobata HOM05D003605 ORTHO05D004292 8.9e-13 77.0 67 61.2
AUR62029939 Chenopodium quinoa HOM05D003605 ORTHO05D004292 1.2e-12 76.6 67 65.7
FAN23G2759 Fragaria x ananassa HOM05D003605 ORTHO05D004292 1.2e-12 76.6 69 58.0
Gohir.D11G224500 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.2e-12 76.6 67 65.7
Gorai.007G241800 Gossypium raimondii HOM05D003605 ORTHO05D004292 1.2e-12 76.6 67 65.7
Nitab4.5_0004386g0030 Nicotiana tabacum HOM05D003605 ORTHO05D004292 1.2e-12 76.6 67 64.2
Phvul.001G250500 Phaseolus vulgaris HOM05D003605 ORTHO05D004292 1.2e-12 76.6 67 61.2
Ah.04g164730 Amaranthus hybridus HOM05D003605 ORTHO05D004292 1.5e-12 76.3 92 53.3
EL10Ac5g11501 Beta vulgaris HOM05D003605 ORTHO05D004292 1.5e-12 76.3 92 54.3
AUR62033748 Chenopodium quinoa HOM05D003605 ORTHO05D004292 1.5e-12 76.3 67 64.2
FvH4_1g21500 Fragaria vesca HOM05D003605 ORTHO05D004292 1.5e-12 76.3 67 59.7
FAN19G1223 Fragaria x ananassa HOM05D003605 ORTHO05D004292 1.5e-12 76.3 67 59.7
FAN26G2714 Fragaria x ananassa HOM05D003605 ORTHO05D004292 1.5e-12 76.3 67 59.7
Gohir.A11G199633 Gossypium hirsutum HOM05D003605 ORTHO05D004292 1.5e-12 76.3 67 65.7
Lalb_Chr07g0185001 Lupinus albus HOM05D003605 ORTHO05D004292 1.5e-12 76.3 92 53.3
Sabra05G0065200 Salix brachista HOM05D006521 ORTHO05D004292 1.5e-12 76.3 67 61.2
ClCG07G009440 Citrullus lanatus HOM05D003605 ORTHO05D004292 2.0e-12 75.9 67 61.2
Eucgr.I00398 Eucalyptus grandis HOM05D003605 ORTHO05D004292 2.0e-12 75.9 92 52.2
Sabra07G0072900 Salix brachista HOM05D003605 ORTHO05D004292 2.0e-12 75.9 67 62.7
Sed0022642 Sechium edule HOM05D003605 ORTHO05D004292 2.0e-12 75.9 92 48.9
CSS0003079 Camellia sinensis var. sinensis HOM05D003605 ORTHO05D004292 2.6e-12 75.5 92 51.1
CARHR113480 Cardamine hirsuta HOM05D003605 ORTHO05D004292 2.6e-12 75.5 72 59.7
CDE03G0458 Ceratophyllum demersum HOM05D003605 ORTHO05D004292 2.6e-12 75.5 67 61.2
COL.COLO4_09912 Corchorus olitorius HOM05D003605 ORTHO05D004292 2.6e-12 75.5 67 62.7
PSO210G3598 Papaver somniferum HOM05D003605 ORTHO05D004292 2.6e-12 75.5 73 56.2
PSO447G0276 Papaver somniferum HOM05D003605 ORTHO05D004292 2.6e-12 75.5 73 57.5
Rhsim08G0008800 Rhododendron simsii HOM05D003605 ORTHO05D004292 2.6e-12 75.5 67 59.7
MELO3C017998.2 Cucumis melo HOM05D003605 ORTHO05D004292 3.4e-12 75.1 67 59.7
Medtr7g106830 Medicago truncatula HOM05D003605 ORTHO05D004292 3.4e-12 75.1 92 51.1
TAR628G1078 Trochodendron aralioides HOM05D003605 ORTHO05D004292 3.4e-12 75.1 92 53.3
VMungo1383G1191 Vigna mungo HOM05D003605 ORTHO05D004292 3.4e-12 75.1 67 59.7
Thhalv10000093m.g Eutrema salsugineum HOM05D003605 ORTHO05D004292 4.4e-12 74.7 67 61.2
SGA_v2.0_scaffold34G13608 Striga asiatica HOM05D003605 ORTHO05D004292 4.4e-12 74.7 67 62.7
AT2G22250 Arabidopsis thaliana HOM05D003605 ORTHO05D004292 5.8e-12 74.3 72 55.6
BcaB08g35052 Brassica carinata HOM05D003605 ORTHO05D004292 5.8e-12 74.3 67 59.7
Carub.0004s0139 Capsella rubella HOM05D003605 ORTHO05D004292 5.8e-12 74.3 67 58.2
Medtr8g091280 Medicago truncatula HOM05D003605 ORTHO05D004292 5.8e-12 74.3 67 58.2
SHI11587 Sapria himalayana HOM05D003605 ORTHO05D004292 5.8e-12 74.3 71 59.2
Sed0024954 Sechium edule HOM05D003605 ORTHO05D004292 5.8e-12 74.3 69 58.0
AL4G11730 Arabidopsis lyrata HOM05D003605 ORTHO05D004292 7.5e-12 73.9 72 54.2
Migut.L00103 Erythranthe guttata HOM05D003605 ORTHO05D004292 7.5e-12 73.9 101 52.5
Os01g0871300 Oryza sativa ssp. japonica HOM05D003605 ORTHO05D004292 7.5e-12 73.9 67 56.7
Pp3c1_16910 Physcomitrium patens HOM05D003605 ORTHO05D004292 7.5e-12 73.9 72 55.6
CBR_g81019 Chara braunii HOM05D003605 ORTHO05D004292 9.9e-12 73.6 92 50.0
RcHm_v2.0_Chr2g0115381 Rosa chinensis HOM05D003605 ORTHO05D004292 9.9e-12 73.6 71 54.9
THA.LOC104824869 Tarenaya hassleriana HOM05D003605 ORTHO05D004292 9.9e-12 73.6 67 59.7
TAR376G0746 Trochodendron aralioides HOM05D003605 ORTHO05D004292 9.9e-12 73.6 67 61.2
CsaV3_4G000360 Cucumis sativus L. HOM05D003605 ORTHO05D004292 1.3e-11 73.2 67 58.2
Hund02342 Selenicereus undatus HOM05D003605 ORTHO05D004292 1.3e-11 73.2 92 52.2
SEGI_19936 Sequoiadendron giganteum HOM05D003605 ORTHO05D004292 1.3e-11 73.2 77 53.2
Zm00001eb348660 Zea mays HOM05D003605 ORTHO05D004292 1.3e-11 73.2 67 55.2
Lsat_1_v5_gn_4_141381 Lactuca sativa HOM05D003605 ORTHO05D004292 1.7e-11 72.8 67 59.7
HPP92_016106 Vanilla planifolia HOM05D003605 ORTHO05D004292 1.7e-11 72.8 67 58.2
Sp4g01300 Schrenkiella parvula HOM05D003605 ORTHO05D004292 2.2e-11 72.4 66 59.1
ATR0564G471 Amborella trichopoda HOM05D003605 ORTHO05D004292 2.9e-11 72.0 71 56.3
EL10Ac4g09572 Beta vulgaris HOM05D003605 ORTHO05D004292 2.9e-11 72.0 98 53.1
Cre02.g147302 Chlamydomonas reinhardtii HOM05D003605 ORTHO05D004292 2.9e-11 72.0 71 53.5
QL06p050316 Quercus lobata HOM05D003605 ORTHO05D004292 2.9e-11 72.0 92 47.8
Rhsim04G0097000 Rhododendron simsii HOM05D003605 ORTHO05D004292 2.9e-11 72.0 67 59.7
RhsimUnG0163700 Rhododendron simsii HOM05D003605 ORTHO05D004292 2.9e-11 72.0 67 59.7
RhsimUnG0212800 Rhododendron simsii HOM05D003605 ORTHO05D004292 2.9e-11 72.0 67 59.7
BcaC02g08723 Brassica carinata HOM05D003605 ORTHO05D004292 3.7e-11 71.6 72 52.8
BcaC07g41087 Brassica carinata HOM05D003605 ORTHO05D004292 3.7e-11 71.6 67 56.7
CARHR231470 Cardamine hirsuta HOM05D003605 ORTHO05D004292 3.7e-11 71.6 67 61.2
Zm00001eb146400 Zea mays HOM05D003605 ORTHO05D004292 4.9e-11 71.2 71 52.1
BraA04t17309Z Brassica rapa HOM05D003605 ORTHO05D004292 8.3e-11 70.5 72 54.2
CANSAT01G1177 Cannabis sativa HOM05D003605 ORTHO05D004292 8.3e-11 70.5 69 56.5
Mapoly0058s0104 Marchantia polymorpha HOM05D003605 ORTHO05D004292 8.3e-11 70.5 71 52.1
Aa31LG7G14510 Aethionema arabicum HOM05D003605 ORTHO05D004292 1.1e-10 70.1 67 58.2
BcaC02g08676 Brassica carinata HOM05D003605 ORTHO05D004292 1.4e-10 69.7 67 58.2
SMO351G0219 Selaginella moellendorffii HOM05D003605 ORTHO05D004292 7.1e-10 67.4 72 54.2
MCO16G531 Micromonas commoda HOM05D003605 ORTHO05D004292 1.6e-09 66.2 71 49.3
AUR62006827 Chenopodium quinoa HOM05D003605 ORTHO05D004292 7.8e-09 63.9 78 52.6
PRCOL_00005023 Prasinoderma coloniale HOM05D003605 ORTHO05D004292 1.0e-08 63.5 72 45.8
CSS0002259 Camellia sinensis var. sinensis HOM05D003605 ORTHO05D004292 1.7e-08 62.8 70 52.9
AUR62000485 Chenopodium quinoa HOM05D003605 ORTHO05D004292 1.1e-07 60.1 78 50.0
arahy.Tifrunner.gnm1.ann1.K33YLS Arachis hypogaea HOM05D003605 ORTHO05D004292 3.3e-07 58.5 55 58.2
Lalb_Chr13g0296071 Lupinus albus HOM05D003605 ORTHO05D004292 8.1e-06 53.9 51 56.9


User provided reference genes

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