Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 5.7e-172 607.4 300 100.0
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 4.6e-129 464.9 294 82.3
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 8.7e-128 460.7 264 84.1
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 1.1e-127 460.3 275 82.2
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.2e-124 450.3 258 84.9
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 1.7e-123 446.4 265 83.0
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 3.8e-123 445.3 252 84.9
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 4.3e-119 431.8 261 80.1
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 7.4e-119 431.0 263 80.2
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.3e-118 430.3 265 78.1
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.3e-118 430.3 268 78.4
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 1.6e-118 429.9 254 81.9
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 3.7e-118 428.7 256 79.3
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 6.9e-117 424.5 272 75.4
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 3.4e-116 422.2 262 78.6
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 5.8e-116 421.4 262 78.6
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.7e-115 419.9 286 73.4
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 4.9e-115 418.3 272 75.0
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 6.5e-115 417.9 264 77.7
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 8.4e-115 417.5 265 77.0
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-114 417.2 272 75.0
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.5e-114 416.0 262 77.9
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 3.2e-114 415.6 248 80.6
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 9.3e-114 414.1 264 76.1
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 1.2e-113 413.7 262 77.5
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 3.5e-113 412.1 251 80.5
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 4.6e-113 411.8 278 71.9
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 4.6e-113 411.8 258 77.5
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 7.9e-113 411.0 262 77.1
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 7.9e-113 411.0 259 79.2
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 3.0e-112 409.1 267 74.9
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 3.9e-112 408.7 254 77.2
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 5.1e-112 408.3 252 79.8
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 8.7e-112 407.5 252 77.0
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 1.1e-111 407.1 239 82.4
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 1.1e-111 407.1 252 77.0
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 1.9e-111 406.4 267 74.2
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.9e-111 406.4 253 77.1
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 4.3e-111 405.2 252 76.2
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 1.3e-110 403.7 252 76.2
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 1.3e-110 403.7 272 72.8
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 2.1e-110 402.9 263 75.7
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 3.7e-110 402.1 250 77.6
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.4e-109 399.4 251 76.1
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 4.1e-109 398.7 245 77.6
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.2e-108 397.1 252 73.8
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 2.0e-108 396.4 252 74.2
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.3e-107 393.7 251 73.7
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.3e-107 393.7 252 73.8
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 5.0e-107 391.7 255 74.5
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 8.4e-107 391.0 251 75.3
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 3.2e-106 389.0 242 77.3
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 4.2e-106 388.7 252 75.4
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 9.3e-106 387.5 265 72.5
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 1.2e-105 387.1 252 71.8
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.2e-105 387.1 252 71.8
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.2e-105 387.1 252 71.8
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 1.6e-105 386.7 252 71.8
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 1.6e-105 386.7 252 71.8
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 2.1e-105 386.3 268 70.1
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 2.7e-105 386.0 309 65.0
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 3.5e-105 385.6 268 70.9
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 3.5e-105 385.6 268 70.5
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 3.5e-105 385.6 247 76.5
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 6.1e-105 384.8 247 74.9
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.0e-104 384.0 252 71.0
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 3.0e-104 382.5 249 74.3
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.5e-103 380.2 255 73.7
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.3e-103 379.0 254 72.4
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.1e-101 374.0 266 69.2
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 1.1e-101 374.0 266 69.2
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 1.1e-101 374.0 249 72.3
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.8e-101 373.2 250 72.4
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 3.1e-101 372.5 272 67.6
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 9.0e-101 370.9 281 68.0
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 7.7e-100 367.9 269 67.3
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 2.9e-99 365.9 264 68.2
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 8.5e-99 364.4 257 69.3
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 5.5e-98 361.7 271 66.8
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 5.5e-98 361.7 250 70.8
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 3.6e-97 359.0 249 70.7
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 4.6e-97 358.6 253 70.0
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 3.0e-96 355.9 251 69.7
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 6.7e-96 354.8 250 69.6
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 2.0e-95 353.2 264 68.2
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 2.0e-95 353.2 238 72.7
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 2.5e-95 352.8 250 70.4
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 7.7e-92 341.3 192 84.4
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 5.5e-90 335.1 203 79.3
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 2.2e-86 323.2 272 61.0
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 2.4e-85 319.7 248 63.3
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 1.2e-81 307.4 256 60.9
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 4.7e-81 305.4 252 62.7
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 8.0e-81 304.7 251 64.1
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 8.8e-80 301.2 281 58.0
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.1e-79 300.8 281 58.0
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 9.7e-79 297.7 168 81.5
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 1.3e-78 297.4 251 59.8
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.1e-77 294.3 168 81.0
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 7.0e-77 291.6 238 63.4
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 4.5e-76 288.9 263 57.4
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 1.0e-75 287.7 262 58.4
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 2.5e-74 283.1 251 58.6
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.2e-73 280.8 247 59.5
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.0e-72 277.7 278 52.5
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 7.0e-69 265.0 253 56.5
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.0e-68 263.5 166 75.9
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 7.7e-68 261.5 254 55.9
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 7.5e-63 245.0 156 74.4
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 5.9e-60 235.3 172 70.9
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 4.0e-56 222.6 307 44.3
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 4.4e-55 219.2 240 50.0
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.9e-50 203.8 167 64.7
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 2.1e-49 200.3 256 44.5
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 2.0e-44 183.7 212 46.2
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.3e-43 180.3 114 75.4
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 2.6e-39 166.8 239 41.4
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 3.4e-39 166.4 157 57.3
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.1e-37 161.4 121 66.9
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 8.9e-32 141.7 96 71.9
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-31 141.4 85 78.8
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 4.7e-25 119.4 76 73.7
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 8.4e-22 108.6 85 57.6
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 2.7e-20 103.6 85 63.5
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 6.6e-19 99.0 66 72.7
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 1.2e-15 88.2 197 31.0
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 9.9e-15 85.1 68 63.2
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.2e-13 79.7 48 75.0
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 2.7e-12 77.0 40 87.5
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 6.0e-12 75.9 38 89.5
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-10 71.6 58 65.5
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-10 71.6 58 62.1
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 6.2e-09 65.9 37 78.4
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 6.2e-09 65.9 37 78.4
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 1.7e-06 57.8 42 64.3


User provided reference genes

Program Settings