Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 2.7e-152 542.0 269 100.0
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 6.2e-93 344.7 195 89.7
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 2.2e-69 266.5 200 66.5
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 8.2e-69 264.6 204 66.7
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 3.4e-67 259.2 189 69.8
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 9.4e-65 251.1 197 67.0
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 2.1e-64 250.0 200 66.0
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 4.6e-64 248.8 194 67.0
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 3.0e-63 246.1 197 62.9
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 6.7e-63 245.0 197 63.5
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 6.7e-63 245.0 217 61.3
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 8.8e-63 244.6 198 62.6
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.1e-62 244.2 198 63.1
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.1e-62 244.2 199 61.8
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.1e-62 244.2 200 62.5
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.5e-62 243.8 200 62.5
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.0e-62 243.4 197 62.9
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 3.3e-62 242.7 199 62.8
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 3.3e-62 242.7 199 62.8
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 3.3e-62 242.7 199 61.8
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 4.4e-62 242.3 198 62.1
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 5.7e-62 241.9 199 62.3
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 9.7e-62 241.1 197 62.9
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 9.7e-62 241.1 199 61.8
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 9.7e-62 241.1 200 62.0
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 1.3e-61 240.7 198 61.6
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.3e-61 240.7 220 57.7
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 1.3e-61 240.7 199 61.3
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.7e-61 240.4 200 62.0
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.7e-61 240.4 200 62.0
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 2.8e-61 239.6 199 61.8
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.7e-61 239.2 198 61.1
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 4.8e-61 238.8 198 60.6
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 4.8e-61 238.8 198 61.1
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.8e-61 238.8 198 61.1
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 4.8e-61 238.8 198 61.1
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 6.3e-61 238.4 199 60.8
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 6.3e-61 238.4 199 60.8
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 6.3e-61 238.4 199 60.8
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 6.3e-61 238.4 199 60.8
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 8.2e-61 238.0 199 61.3
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 8.2e-61 238.0 200 61.5
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 8.2e-61 238.0 198 61.6
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.1e-60 237.7 199 61.3
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.1e-60 237.7 198 61.1
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 1.1e-60 237.7 199 59.8
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 1.1e-60 237.7 196 61.7
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 1.4e-60 237.3 198 60.6
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 1.4e-60 237.3 198 62.1
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 1.4e-60 237.3 198 60.6
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 1.4e-60 237.3 198 61.1
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.8e-60 236.9 198 60.6
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.4e-60 236.5 198 61.1
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 2.4e-60 236.5 223 56.5
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 2.4e-60 236.5 198 61.1
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.4e-60 236.5 199 60.8
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 3.1e-60 236.1 198 61.1
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.1e-60 236.1 199 60.3
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 3.1e-60 236.1 198 61.1
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 3.1e-60 236.1 197 59.4
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 3.1e-60 236.1 199 60.8
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 3.1e-60 236.1 197 62.4
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 3.1e-60 236.1 197 59.9
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 4.1e-60 235.7 199 60.8
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.1e-60 235.7 198 61.6
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.1e-60 235.7 198 61.6
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.1e-60 235.7 197 61.9
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 4.1e-60 235.7 199 60.8
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 9.1e-60 234.6 198 60.6
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 9.1e-60 234.6 197 61.9
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 9.1e-60 234.6 198 60.6
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.2e-59 234.2 198 60.6
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-59 234.2 198 60.6
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 1.2e-59 234.2 198 60.6
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 1.2e-59 234.2 198 59.6
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.2e-59 234.2 198 60.6
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.5e-59 233.8 198 61.1
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.5e-59 233.8 198 60.1
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.5e-59 233.8 197 61.4
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.5e-59 233.8 199 60.3
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 2.0e-59 233.4 199 59.3
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 2.0e-59 233.4 199 59.3
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 2.0e-59 233.4 198 60.1
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 2.0e-59 233.4 199 60.3
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 2.0e-59 233.4 199 58.8
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 2.6e-59 233.0 198 60.6
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 2.6e-59 233.0 198 60.6
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 2.6e-59 233.0 200 60.5
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 2.6e-59 233.0 199 60.3
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 2.6e-59 233.0 199 58.8
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 2.6e-59 233.0 198 61.6
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 3.4e-59 232.6 198 60.6
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 3.4e-59 232.6 198 60.6
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.4e-59 232.6 197 60.9
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 3.4e-59 232.6 199 59.3
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.4e-59 232.6 199 59.8
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 3.4e-59 232.6 200 59.5
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 4.5e-59 232.3 199 59.3
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 4.5e-59 232.3 197 60.4
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 5.9e-59 231.9 198 60.1
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 5.9e-59 231.9 198 60.1
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 5.9e-59 231.9 199 59.3
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 5.9e-59 231.9 198 59.1
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 5.9e-59 231.9 199 59.8
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 5.9e-59 231.9 197 58.9
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 7.7e-59 231.5 198 60.1
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 7.7e-59 231.5 189 61.9
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 7.7e-59 231.5 197 59.4
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.0e-58 231.1 210 58.1
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 1.0e-58 231.1 199 59.8
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 1.0e-58 231.1 198 58.6
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 1.3e-58 230.7 197 59.9
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 1.3e-58 230.7 189 61.9
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.7e-58 230.3 198 58.1
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 3.8e-58 229.2 198 59.6
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 8.5e-58 228.0 189 60.8
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 8.5e-58 228.0 189 60.8
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 8.5e-58 228.0 199 58.8
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 8.5e-58 228.0 199 58.8
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 8.5e-58 228.0 199 58.8
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 9.4e-57 224.6 189 58.7
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.2e-56 224.2 189 59.3
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.6e-56 223.8 189 58.2
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 2.7e-56 223.0 198 59.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.8e-55 220.3 240 50.4
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.3e-55 219.9 188 58.5
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 8.8e-55 218.0 198 57.1
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 8.8e-55 218.0 198 57.1
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 1.1e-54 217.6 198 57.1
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 1.1e-54 217.6 198 57.1
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 1.5e-54 217.2 189 57.1
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 3.3e-54 216.1 215 54.0
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 5.3e-52 208.8 178 59.0
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 1.6e-51 207.2 188 55.3
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.3e-50 204.1 209 53.6
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 5.0e-50 202.2 199 55.8
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 8.5e-50 201.4 188 54.3
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.1e-49 201.1 195 52.3
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 2.7e-48 196.4 187 54.5
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.4e-47 194.1 272 42.6
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.1e-44 183.0 189 50.8
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.3e-44 182.2 189 50.8
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.3e-44 182.2 189 50.3
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 3.6e-40 169.5 146 58.9
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 3.7e-37 159.5 212 43.4
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 3.7e-37 159.5 117 63.2
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 3.5e-35 152.9 130 60.0
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.5e-35 152.5 122 59.8
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 1.3e-34 151.0 113 68.1
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.1e-28 129.4 134 51.5
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 7.0e-28 128.6 168 42.3
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 2.3e-15 87.0 103 46.6
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 1.7e-13 80.9 60 61.7
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 6.0e-11 72.4 61 63.9
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.7e-10 70.9 53 60.4
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 3.9e-10 69.7 62 61.3


User provided reference genes

Program Settings