Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 8.4e-114 413.7 206 100.0
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 6.9e-76 287.7 247 68.8
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.9e-70 269.6 221 68.8
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 2.5e-33 146.4 273 43.2
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 3.4e-30 136.0 288 41.0
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.7e-29 133.7 276 41.3
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 2.8e-29 132.9 283 42.0
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 4.9e-29 132.1 298 39.9
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 1.6e-27 127.1 311 40.8
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 2.0e-27 126.7 285 43.5
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 2.9e-26 122.9 277 39.7
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 1.1e-25 120.9 299 37.8
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.9e-25 120.2 289 36.7
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 9.5e-25 117.9 290 39.7
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 1.0e-23 114.4 278 38.1
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 3.0e-23 112.8 267 40.1
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 6.8e-23 111.7 291 37.5
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.5e-22 110.5 305 34.8
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 2.0e-22 110.2 276 39.9
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 4.4e-22 109.0 303 36.0
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 9.8e-22 107.8 278 35.6
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 2.9e-21 106.3 208 45.2
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 1.8e-20 103.6 221 44.3
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 9.2e-20 101.3 221 39.4
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.2e-19 100.9 290 33.8
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 1.2e-19 100.9 284 39.1
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 7.8e-19 98.2 221 43.9
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.7e-18 97.1 280 37.9
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 2.3e-18 96.7 267 35.6
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.6e-18 95.1 280 37.5
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 6.6e-18 95.1 280 37.5
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 8.6e-18 94.7 308 34.7
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 8.6e-18 94.7 283 37.1
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 2.5e-17 93.2 271 36.5
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 3.3e-17 92.8 285 36.1
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 4.3e-17 92.4 286 36.7
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 7.3e-17 91.7 282 36.9
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.1e-16 90.1 260 37.3
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 4.7e-16 89.0 282 35.5
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 4.7e-16 89.0 295 36.6
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 6.2e-16 88.6 221 36.7
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 8.0e-16 88.2 268 35.8
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.4e-15 87.4 286 36.0
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 3.1e-15 86.3 246 39.0
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 4.0e-15 85.9 281 34.9
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 6.8e-15 85.1 217 37.3
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 8.9e-15 84.7 229 38.9
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 8.9e-15 84.7 279 30.8
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.5e-14 84.0 204 38.2
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 3.4e-14 82.8 277 35.0
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.8e-14 82.0 229 38.0
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.8e-14 82.0 229 38.0
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 5.8e-14 82.0 255 34.5
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.3e-13 80.9 252 34.9
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.7e-13 80.5 203 39.4
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 2.2e-13 80.1 299 31.8
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 2.9e-13 79.7 289 34.3
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 2.9e-13 79.7 191 42.9
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 7.0e-12 75.1 243 35.0
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 2.0e-11 73.6 270 34.1
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 2.7e-11 73.2 221 32.6
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 7.8e-11 71.6 241 34.9
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.0e-10 71.2 226 35.0
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.0e-10 69.7 266 33.1
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.6e-10 68.6 269 34.9
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.1e-09 67.8 191 39.8
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.1e-09 67.8 267 33.0
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.5e-09 67.4 184 36.4
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.9e-09 67.0 190 40.5
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.9e-09 67.0 261 30.3
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 5.6e-09 65.5 250 35.2
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 7.3e-09 65.1 196 37.8
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.2e-08 64.3 234 32.1
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 2.1e-08 63.5 235 31.9
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 3.6e-08 62.8 216 37.0
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 3.6e-08 62.8 279 29.7
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 6.2e-08 62.0 271 32.5
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 1.4e-07 60.8 262 30.5
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.4e-07 60.8 212 31.6
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 4.0e-07 59.3 223 37.7
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.2e-07 58.9 229 37.6
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 6.8e-07 58.5 324 30.2
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 6.8e-07 58.5 215 34.4
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 1.2e-06 57.8 240 33.3
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.5e-06 57.4 265 32.8
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.6e-06 56.6 294 31.0
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 3.4e-06 56.2 262 28.2
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 3.4e-06 56.2 248 32.3
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 4.4e-06 55.8 273 30.8


User provided reference genes

Program Settings