Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 5.4e-259 897.1 446 100.0
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 1.1e-256 889.4 446 99.3
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 6.7e-193 677.6 442 77.8
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 7.0e-190 667.5 444 77.7
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 2.6e-189 665.6 443 77.4
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.0e-188 663.7 443 77.2
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 5.5e-187 657.9 442 77.1
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 3.0e-185 652.1 438 76.5
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 2.0e-184 649.4 411 78.8
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 1.3e-183 646.7 438 75.6
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 1.4e-182 643.3 417 76.3
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 7.0e-182 641.0 443 74.7
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 7.0e-182 641.0 406 77.6
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 2.2e-180 636.0 442 73.1
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 5.0e-180 634.8 414 75.6
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 4.2e-179 631.7 432 72.9
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 1.6e-178 629.8 442 71.3
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.7e-178 629.0 409 75.6
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 6.1e-178 627.9 437 73.0
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 6.1e-178 627.9 424 73.8
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 8.0e-178 627.5 420 74.3
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 5.2e-177 624.8 433 72.3
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 8.8e-177 624.0 433 72.5
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.0e-176 622.9 445 71.9
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 5.7e-176 621.3 437 73.0
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 9.7e-176 620.5 442 72.9
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.7e-175 619.8 445 71.7
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.2e-175 619.4 410 74.6
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 3.7e-175 618.6 411 74.0
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 4.8e-175 618.2 433 71.6
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 6.3e-175 617.8 410 75.1
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 1.4e-174 616.7 437 70.7
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.8e-174 616.3 410 74.9
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 4.1e-174 615.1 430 73.0
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 5.3e-174 614.8 447 70.0
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 7.0e-174 614.4 445 71.5
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.7e-173 612.5 437 71.9
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.7e-173 612.5 456 69.7
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 2.7e-173 612.5 411 73.7
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 5.9e-173 611.3 441 71.0
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 2.2e-172 609.4 416 73.8
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 2.9e-172 609.0 436 69.7
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 4.7e-170 601.7 447 70.5
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 3.0e-169 599.0 411 73.2
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 4.0e-169 598.6 412 72.6
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 8.8e-169 597.4 403 73.2
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.5e-168 596.7 435 69.2
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 4.4e-168 595.1 430 68.4
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 1.7e-167 593.2 427 69.6
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.7e-167 593.2 412 71.6
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 1.7e-167 593.2 420 70.0
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 3.7e-167 592.0 411 71.5
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 1.8e-166 589.7 432 67.8
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 1.8e-166 589.7 432 68.3
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 1.8e-166 589.7 432 67.8
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 1.8e-166 589.7 415 71.1
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 3.1e-166 589.0 432 68.3
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 7.0e-166 587.8 409 70.9
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 9.1e-166 587.4 441 67.3
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 9.1e-166 587.4 441 67.3
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.6e-165 586.6 423 68.8
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 2.7e-165 585.9 415 70.1
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 3.5e-165 585.5 399 75.2
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 4.5e-165 585.1 412 71.6
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.0e-164 583.9 433 67.2
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 1.0e-164 583.9 434 66.6
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 2.9e-164 582.4 409 70.4
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 2.9e-164 582.4 409 70.2
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 5.0e-164 581.6 441 68.0
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.5e-163 580.1 429 68.3
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.9e-163 579.7 413 68.8
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 2.5e-163 579.3 421 68.9
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 2.5e-163 579.3 489 62.8
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 2.1e-162 576.2 407 70.8
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 3.6e-162 575.5 446 64.3
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 3.6e-162 575.5 438 67.1
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.5e-160 570.1 350 80.9
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 1.7e-159 566.6 422 68.0
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 1.7e-159 566.6 400 69.5
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 2.8e-159 565.8 437 65.2
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 2.8e-159 565.8 426 66.2
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 3.7e-159 565.5 406 71.2
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 3.7e-159 565.5 406 71.2
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 7.0e-158 561.2 404 69.6
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 1.2e-157 560.5 421 66.0
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 1.3e-156 557.0 438 64.4
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.7e-156 556.6 411 66.7
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 7.3e-155 551.2 402 66.7
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.2e-154 550.4 440 64.1
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 2.8e-154 549.3 395 68.9
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 4.7e-154 548.5 400 69.2
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.6e-152 542.7 431 64.7
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 4.9e-151 538.5 438 60.5
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 5.6e-147 525.0 388 66.2
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 4.7e-146 521.9 433 62.6
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.3e-143 513.8 411 64.2
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 6.0e-141 505.0 346 72.3
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.7e-140 503.4 423 60.0
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 2.3e-140 503.1 361 67.9
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 2.1e-138 496.5 418 60.8
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 5.8e-136 488.4 423 58.6
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.7e-135 486.9 407 59.2
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.2e-133 480.7 402 59.2
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 1.5e-131 473.8 397 59.4
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 4.3e-131 472.2 358 65.9
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 6.8e-129 464.9 336 68.2
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 1.5e-128 463.8 403 59.6
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.9e-127 459.5 314 72.3
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.9e-126 456.8 338 64.8
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 2.7e-125 453.0 413 56.2
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.6e-125 452.2 338 63.9
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 5.6e-123 445.3 338 63.3
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 3.4e-120 436.0 445 53.9
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 7.8e-117 424.9 285 74.7
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 4.0e-113 412.5 285 73.7
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.8e-105 387.1 270 74.1
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 8.2e-98 361.7 337 52.2
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 1.3e-95 354.4 322 55.0
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.2e-88 331.3 221 69.7
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 2.5e-86 323.6 410 44.1
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 2.7e-85 320.1 289 56.1
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 7.9e-77 292.0 232 62.9
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 6.5e-71 272.3 223 63.7
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 8.5e-71 271.9 206 63.6
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 1.5e-70 271.2 340 42.9
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.6e-69 267.7 249 53.8
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.7e-66 257.7 254 52.0
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 6.3e-66 255.8 172 71.5
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.6e-56 224.6 154 73.4
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 4.2e-46 189.9 177 57.6
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 3.6e-37 160.2 125 54.4
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.7e-37 159.8 122 59.0
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 8.0e-37 159.1 190 50.5
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 1.5e-30 138.3 127 49.6
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 2.1e-29 134.4 167 52.1
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 2.8e-29 134.0 117 59.0
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 6.8e-28 129.4 183 39.9
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 7.8e-24 115.9 94 68.1
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 1.5e-22 111.7 384 26.3
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 1.9e-22 111.3 307 29.3
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 8.4e-18 95.9 51 86.3
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 5.4e-17 93.2 67 62.7
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 2.7e-16 90.9 58 74.1
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.9e-10 70.9 103 41.7
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 3.5e-08 63.9 79 41.8
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 3.5e-08 63.9 79 41.8


User provided reference genes

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