Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 2.0e-197 692.2 339 100.0
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 1.6e-141 506.5 248 99.2
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 5.6e-131 471.5 348 69.5
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 2.3e-129 466.1 325 71.7
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 4.4e-128 461.8 353 68.0
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 7.5e-128 461.1 299 76.3
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 1.7e-127 459.9 322 72.0
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 2.2e-127 459.5 314 76.8
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 2.9e-127 459.1 348 67.0
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 1.0e-124 450.7 318 69.2
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 1.9e-123 446.4 386 61.9
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 2.3e-121 439.5 320 68.1
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 8.6e-116 421.0 342 63.2
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 4.3e-115 418.7 320 65.6
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 6.6e-108 394.8 328 62.2
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 3.3e-107 392.5 362 59.1
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 3.4e-104 382.5 321 61.1
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 5.8e-104 381.7 295 65.8
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 1.3e-103 380.6 302 64.9
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 4.9e-103 378.6 304 64.8
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 8.4e-103 377.9 342 58.5
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 1.4e-102 377.1 306 62.7
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 1.9e-102 376.7 322 60.9
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 7.1e-102 374.8 321 61.4
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 9.2e-102 374.4 338 59.8
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 1.6e-101 373.6 321 59.8
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 2.7e-101 372.9 320 61.2
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 2.7e-101 372.9 303 62.4
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 6.6e-100 368.2 297 63.6
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 6.6e-100 368.2 300 62.3
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 8.7e-100 367.9 335 56.1
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 1.5e-99 367.1 308 60.4
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 5.6e-99 365.2 302 61.9
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 9.6e-99 364.4 300 63.3
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 1.2e-98 364.0 320 59.7
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 1.2e-98 364.0 308 60.7
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 2.6e-96 356.3 296 61.8
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 2.6e-96 356.3 303 59.1
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 9.9e-96 354.4 302 59.6
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 2.2e-95 353.2 308 58.8
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 2.9e-95 352.8 302 60.6
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 6.4e-95 351.7 304 59.2
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 1.9e-94 350.1 302 59.3
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 2.4e-94 349.7 331 55.3
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 4.2e-94 349.0 308 58.1
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 7.1e-94 348.2 302 59.9
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 3.5e-93 345.9 301 57.8
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 1.7e-92 343.6 307 58.3
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 1.7e-92 343.6 276 62.7
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 3.9e-92 342.4 307 59.0
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 5.1e-92 342.0 311 57.2
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 6.6e-92 341.7 306 58.2
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 8.7e-92 341.3 298 58.7
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 1.1e-91 340.9 344 52.9
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 1.9e-91 340.1 308 58.4
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 1.9e-91 340.1 328 56.7
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 3.3e-91 339.3 304 58.6
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 4.3e-91 339.0 335 55.2
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 5.6e-91 338.6 302 58.9
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 1.6e-90 337.0 299 56.9
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 1.6e-90 337.0 332 56.9
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 3.6e-90 335.9 278 62.2
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 6.2e-90 335.1 311 56.6
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 6.2e-90 335.1 299 56.9
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 1.1e-89 334.3 300 56.0
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 1.4e-89 334.0 298 58.7
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 3.1e-89 332.8 332 56.0
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 4.0e-89 332.4 311 56.6
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 4.0e-89 332.4 325 54.5
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 4.0e-89 332.4 310 56.8
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 6.9e-89 331.6 251 64.5
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 1.2e-88 330.9 321 53.0
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 2.6e-88 329.7 305 54.4
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 3.8e-87 325.9 332 52.7
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 8.4e-87 324.7 253 64.8
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 8.4e-87 324.7 308 55.2
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 8.4e-87 324.7 304 57.6
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 1.1e-86 324.3 303 56.1
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 3.2e-86 322.8 298 56.4
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 5.4e-86 322.0 283 59.0
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 5.4e-86 322.0 292 57.2
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 7.1e-86 321.6 241 64.7
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 9.3e-86 321.2 241 64.3
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 6.0e-85 318.5 275 59.3
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 3.9e-84 315.8 275 58.5
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 8.7e-84 314.7 324 52.2
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 1.8e-81 307.0 303 54.1
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 2.0e-80 303.5 303 53.5
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 4.9e-79 298.9 322 50.9
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 6.0e-77 292.0 301 50.5
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 2.3e-76 290.0 296 50.3
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 1.5e-75 287.3 261 55.9
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 4.5e-72 275.8 292 51.7
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 7.9e-69 265.0 382 42.1
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 8.7e-68 261.5 302 46.4
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 9.0e-65 251.5 290 49.0
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 6.1e-61 238.8 191 64.4
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 2.9e-55 219.9 306 42.5
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 3.6e-53 213.0 214 53.7
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 3.9e-52 209.5 309 40.8
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 8.8e-52 208.4 313 39.6
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 2.2e-47 193.7 300 38.0
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 3.2e-46 189.9 283 43.8
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 9.4e-46 188.3 349 35.5
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 8.0e-45 185.3 167 57.5
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 8.5e-39 165.2 393 31.8
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 1.8e-28 131.0 321 31.2
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 5.4e-25 119.4 128 50.0
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 1.6e-24 117.9 256 33.2
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 3.3e-22 110.2 102 51.0
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 4.7e-21 106.3 157 40.1
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 2.6e-19 100.5 107 48.6
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 5.0e-15 86.3 62 66.1
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 1.2e-13 81.6 139 37.4
COL.COLO4_19820 Corchorus olitorius HOM05D001041 ORTHO05D000846 6.0e-08 62.8 47 72.3


User provided reference genes

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