Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 6.3e-73 277.3 138 100.0
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.6e-68 262.7 153 88.9
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-67 259.2 138 93.5
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 2.8e-57 225.3 151 73.5
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 3.7e-57 224.9 151 74.2
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 4.1e-56 221.5 150 73.3
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 9.1e-56 220.3 151 72.8
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 5.9e-55 217.6 149 72.5
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 7.7e-55 217.2 149 73.8
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.6e-52 209.5 151 69.5
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.0e-51 206.8 151 68.9
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.5e-50 203.0 151 67.5
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.4e-48 196.4 153 66.0
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.0e-46 190.3 150 65.3
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 2.8e-41 172.2 140 70.0
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 3.1e-40 168.7 148 56.8
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 5.4e-40 167.9 149 55.0
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 7.0e-40 167.5 148 55.4
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.2e-39 166.8 149 55.7
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 1.2e-39 166.8 146 56.2
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.2e-39 166.8 146 56.2
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 2.7e-39 165.6 147 53.7
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 2.7e-39 165.6 147 53.7
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 2.7e-39 165.6 147 53.7
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 4.5e-39 164.9 150 56.0
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 7.7e-39 164.1 148 53.4
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.3e-38 163.3 150 54.0
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.3e-38 163.3 149 56.4
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 1.7e-38 162.9 149 54.4
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 2.2e-38 162.5 147 53.7
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 2.9e-38 162.2 148 52.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 3.8e-38 161.8 149 54.4
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 8.5e-38 160.6 149 53.0
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 1.1e-37 160.2 149 52.3
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.5e-37 159.8 149 51.7
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 1.9e-37 159.5 149 55.7
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 2.5e-37 159.1 149 54.4
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 2.5e-37 159.1 149 53.7
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 3.2e-37 158.7 149 53.0
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 4.2e-37 158.3 149 53.7
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 4.2e-37 158.3 149 52.3
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 4.2e-37 158.3 148 52.0
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 5.5e-37 157.9 149 53.0
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 5.5e-37 157.9 149 53.7
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 7.2e-37 157.5 149 51.7
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 7.2e-37 157.5 149 55.0
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 9.4e-37 157.1 149 52.3
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 9.4e-37 157.1 149 51.0
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.2e-36 156.8 147 55.1
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.2e-36 156.8 136 55.1
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.6e-36 156.4 149 51.0
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 3.6e-36 155.2 145 53.1
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 3.6e-36 155.2 142 54.2
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.6e-36 155.2 142 54.2
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.6e-36 155.2 142 54.2
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 3.6e-36 155.2 149 53.0
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 4.7e-36 154.8 149 53.7
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 4.7e-36 154.8 147 51.0
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 4.7e-36 154.8 147 51.0
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 4.7e-36 154.8 149 53.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 6.1e-36 154.5 147 51.0
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.0e-36 154.1 147 50.3
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 8.0e-36 154.1 149 49.7
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.0e-36 154.1 142 53.5
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 1.0e-35 153.7 147 51.0
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.0e-35 153.7 142 53.5
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.0e-35 153.7 142 53.5
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.0e-35 153.7 142 53.5
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.0e-35 153.7 147 50.3
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.8e-35 152.9 149 48.3
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.8e-35 152.9 148 50.7
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.8e-35 152.9 149 52.3
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 2.3e-35 152.5 150 50.0
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.0e-35 152.1 149 50.3
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 3.0e-35 152.1 149 52.3
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.0e-35 152.1 149 49.0
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.0e-35 151.8 149 49.7
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.0e-35 151.8 147 49.7
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 4.0e-35 151.8 148 50.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.0e-35 151.8 147 48.3
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.2e-35 151.4 147 49.7
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 5.2e-35 151.4 133 53.4
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 5.2e-35 151.4 151 49.7
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.2e-35 151.4 149 48.3
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.8e-35 151.0 147 48.3
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 8.8e-35 150.6 149 51.7
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.5e-34 149.8 149 51.7
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.5e-34 149.8 149 52.3
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.5e-34 149.8 149 51.7
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 2.6e-34 149.1 149 51.0
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 2.6e-34 149.1 151 50.3
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 2.6e-34 149.1 147 51.7
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 4.4e-34 148.3 148 50.0
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 5.7e-34 147.9 149 49.0
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 5.7e-34 147.9 150 48.0
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 7.5e-34 147.5 181 44.2
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 7.5e-34 147.5 149 51.7
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 9.8e-34 147.1 149 51.0
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 9.8e-34 147.1 159 47.8
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 9.8e-34 147.1 156 47.4
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.3e-33 146.7 143 49.7
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.7e-33 146.4 147 51.7
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.7e-33 146.4 147 51.0
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.8e-33 145.6 149 49.0
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 3.7e-33 145.2 147 51.0
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 4.9e-33 144.8 144 50.0
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 6.3e-33 144.4 159 45.9
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 8.3e-33 144.1 160 45.6
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.1e-32 143.7 146 49.3
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.4e-32 143.3 152 46.1
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.4e-32 143.3 145 48.3
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 1.4e-32 143.3 160 47.5
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.8e-32 142.9 132 58.3
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.8e-32 142.9 151 46.4
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 9.1e-32 140.6 149 47.7
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.2e-31 140.2 81 82.7
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.0e-31 139.4 169 46.2
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 2.7e-31 139.0 149 45.6
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.5e-31 138.7 132 50.0
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 5.9e-31 137.9 147 49.0
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 7.7e-31 137.5 131 52.7
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 7.7e-31 137.5 131 52.7
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.3e-30 136.7 149 45.0
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 2.3e-30 136.0 149 49.7
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.8e-30 135.2 143 45.5
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.6e-30 134.4 143 45.5
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 8.6e-30 134.0 147 46.3
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.9e-29 132.9 143 44.1
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 2.5e-29 132.5 145 46.2
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.5e-29 132.5 143 44.8
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 9.5e-29 130.6 149 42.3
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 2.8e-28 129.0 149 41.6
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 2.8e-28 129.0 221 35.3
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 4.7e-28 128.3 151 44.4
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 6.1e-28 127.9 142 43.0
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.0e-27 127.1 142 42.3
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.0e-27 127.1 142 42.3
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.0e-27 127.1 142 42.3
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 2.3e-27 125.9 143 42.0
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 3.0e-27 125.6 89 62.9
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 8.9e-27 124.0 89 60.7
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.2e-26 123.6 139 44.6
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.5e-26 123.2 146 40.4
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.0e-26 122.9 135 44.4
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 5.7e-26 121.3 89 62.9
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 3.7e-25 118.6 87 70.1
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 3.7e-25 118.6 192 39.1
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 6.3e-25 117.9 139 41.0
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 8.3e-25 117.5 89 58.4
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.7e-22 109.8 89 56.2
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 5.6e-21 104.8 142 42.3
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 6.8e-19 97.8 100 45.0
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 6.8e-19 97.8 83 48.2
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 4.4e-18 95.1 105 48.6
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 4.4e-18 95.1 105 48.6
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 1.3e-17 93.6 151 37.1
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 2.2e-17 92.8 107 42.1
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 6.4e-17 91.3 146 37.7
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 5.4e-16 88.2 106 41.5
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 3.5e-15 85.5 73 64.4
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 6.6e-14 81.3 132 36.4
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 4.3e-13 78.6 137 31.4
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 5.2e-11 71.6 52 61.5
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 7.5e-10 67.8 44 63.6
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 3.7e-09 65.5 142 26.1
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 7.1e-08 61.2 88 37.5
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 2.1e-07 59.7 135 24.4
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.3e-06 57.0 132 24.2
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.0e-06 55.8 142 22.5


User provided reference genes

Program Settings