Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1PU3AF Arachis hypogaea HOM05D002087 ORTHO05D002101 3.9e-54 214.5 108 100.0
arahy.Tifrunner.gnm1.ann1.XU9PSJ Arachis hypogaea HOM05D002087 ORTHO05D002101 1.3e-52 209.5 108 98.1
Glyma.17G027400 Glycine max HOM05D002087 ORTHO05D002101 7.4e-21 104.0 100 60.0
VMungo1215G3045 Vigna mungo HOM05D002087 ORTHO05D002101 2.2e-20 102.4 96 59.4
Medtr4g120040 Medicago truncatula HOM05D002087 ORTHO05D002101 2.8e-20 102.1 100 56.0
Glyma.15G149600 Glycine max HOM05D002087 ORTHO05D002101 8.2e-20 100.5 105 58.1
Phvul.003G096700 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 6.9e-19 97.4 82 61.0
FAN12G1374 Fragaria x ananassa HOM05D002087 ORTHO05D002101 2.6e-18 95.5 105 53.3
Ca_21486_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 5.9e-18 94.4 82 54.9
FAN17G2928 Fragaria x ananassa HOM05D002087 ORTHO05D002101 7.7e-18 94.0 97 56.7
FAN12G0677 Fragaria x ananassa HOM05D002087 ORTHO05D002101 1.7e-17 92.8 98 55.1
Psat4g026680 Pisum sativum HOM05D002087 ORTHO05D002101 3.8e-17 91.7 105 52.4
FAN07G0698 Fragaria x ananassa HOM05D002087 ORTHO05D002101 5.0e-17 91.3 102 53.9
Lj6g0027178 Lotus japonicus HOM05D002087 ORTHO05D002101 1.4e-16 89.7 106 52.8
RcHm_v2.0_Chr4g0422961 Rosa chinensis HOM05D002087 ORTHO05D002101 1.4e-16 89.7 98 52.0
FvH4_4g18470 Fragaria vesca HOM05D002087 ORTHO05D002101 2.5e-16 89.0 96 54.2
Phvul.009G249500 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 4.2e-16 88.2 100 52.0
Glyma.09G043400 Glycine max HOM05D002087 ORTHO05D002101 9.4e-16 87.0 88 55.7
QL06p009975 Quercus lobata HOM05D002087 ORTHO05D002101 9.4e-16 87.0 89 53.9
QL93p2007_0079 Quercus lobata HOM05D002087 ORTHO05D002101 9.4e-16 87.0 89 53.9
Sabra10G0007800 Salix brachista HOM05D002087 ORTHO05D002101 1.2e-15 86.7 85 56.5
TWI73G0336 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 2.1e-15 85.9 80 60.0
Thecc.04G287100 Theobroma cacao HOM05D002087 ORTHO05D002101 6.1e-15 84.3 80 56.2
Lj4g0021541 Lotus japonicus HOM05D002087 ORTHO05D002101 1.0e-14 83.6 100 50.0
Potri.010G012100 Populus trichocarpa HOM05D002087 ORTHO05D002101 1.0e-14 83.6 82 56.1
MD00G1127700 Malus domestica HOM05D002087 ORTHO05D002101 1.8e-14 82.8 86 53.5
Duzib151G0120 Durio zibethinus HOM05D002087 ORTHO05D002101 6.7e-14 80.9 107 48.6
Dinv29766 Davidia involucrata HOM05D002087 ORTHO05D002101 8.8e-14 80.5 81 48.1
TWI09G0245 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 1.5e-13 79.7 77 58.4
Atru.chr6.1998 Acer truncatum HOM05D002087 ORTHO05D002101 3.3e-13 78.6 105 52.4
Ciclev10006308m.g Citrus clementina HOM05D002087 ORTHO05D002101 3.3e-13 78.6 80 52.5
Manes.03G197100 Manihot esculenta HOM05D002087 ORTHO05D002101 3.3e-13 78.6 99 49.5
COL.COLO4_13835 Corchorus olitorius HOM05D002087 ORTHO05D002101 5.7e-13 77.8 78 50.0
Gohir.D10G171400 Gossypium hirsutum HOM05D002087 ORTHO05D002101 9.7e-13 77.0 84 52.4
Gorai.011G191500 Gossypium raimondii HOM05D002087 ORTHO05D002101 9.7e-13 77.0 84 52.4
Prupe.1G133500 Prunus persica HOM05D002087 ORTHO05D002101 2.8e-12 75.5 82 48.8
Nitab4.5_0002820g0100 Nicotiana tabacum HOM05D002087 ORTHO05D002101 3.7e-12 75.1 86 48.8
CARHR290450 Cardamine hirsuta HOM05D002087 ORTHO05D002101 8.2e-12 73.9 79 49.4
AT4G15910 Arabidopsis thaliana HOM05D002087 ORTHO05D002101 1.1e-11 73.6 84 46.4
Gohir.A10G165300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 1.1e-11 73.6 84 50.0
Dinv44363 Davidia involucrata HOM05D002087 ORTHO05D002101 1.4e-11 73.2 81 46.9
Carub.0007s2575 Capsella rubella HOM05D002087 ORTHO05D002101 1.8e-11 72.8 85 48.2
PGR031G1676 Punica granatum HOM05D002087 ORTHO05D002101 1.8e-11 72.8 79 49.4
TAR633G2750 Trochodendron aralioides HOM05D002087 ORTHO05D002101 2.4e-11 72.4 82 52.4
vmacro02442 Vaccinium macrocarpon HOM05D002087 ORTHO05D002101 2.4e-11 72.4 81 53.1
THA.LOC104820291 Tarenaya hassleriana HOM05D002087 ORTHO05D002101 3.1e-11 72.0 83 48.2
AL7G39360 Arabidopsis lyrata HOM05D002087 ORTHO05D002101 4.1e-11 71.6 84 45.2
Hund05435 Selenicereus undatus HOM05D002087 ORTHO05D002101 5.3e-11 71.2 104 40.4
Cpa.g.sc16.192 Carica papaya HOM05D002087 ORTHO05D002101 7.0e-11 70.9 79 50.6
ECA236G3158 Erigeron canadensis HOM05D002087 ORTHO05D002101 7.0e-11 70.9 85 42.4
Rhsim13G0009300 Rhododendron simsii HOM05D002087 ORTHO05D002101 7.0e-11 70.9 79 51.9
Aa31LG10G6230 Aethionema arabicum HOM05D002087 ORTHO05D002101 9.1e-11 70.5 80 45.0
CAN.G1989.9 Capsicum annuum HOM05D002087 ORTHO05D002101 9.1e-11 70.5 79 46.8
Thhalv10026659m.g Eutrema salsugineum HOM05D002087 ORTHO05D002101 9.1e-11 70.5 72 48.6
Sc05g0003740 Simmondsia chinensis HOM05D002087 ORTHO05D002101 1.2e-10 70.1 82 43.9
BolC1t02646H Brassica oleracea HOM05D002087 ORTHO05D002101 2.0e-10 69.3 83 45.8
arahy.Tifrunner.gnm1.ann1.FY9BZZ Arachis hypogaea HOM05D002087 ORTHO05D002101 3.5e-10 68.6 106 39.6
BcaC09g50285 Brassica carinata HOM05D002087 ORTHO05D002101 3.5e-10 68.6 72 48.6
C01p26980 Brassica napus HOM05D002087 ORTHO05D002101 3.5e-10 68.6 72 48.6
CAN.G1280.4 Capsicum annuum HOM05D002087 ORTHO05D002101 3.5e-10 68.6 79 46.8
HanXRQChr04g0114131 Helianthus annuus HOM05D002087 ORTHO05D002101 3.5e-10 68.6 84 45.2
CAN.G1280.5 Capsicum annuum HOM05D002087 ORTHO05D002101 4.5e-10 68.2 79 46.8
CAN.G1989.10 Capsicum annuum HOM05D002087 ORTHO05D002101 4.5e-10 68.2 79 46.8
Nitab4.5_0004367g0080 Nicotiana tabacum HOM05D002087 ORTHO05D002101 4.5e-10 68.2 86 40.7
TAR365G0110 Trochodendron aralioides HOM05D002087 ORTHO05D002101 5.9e-10 67.8 75 52.0
Ah.08g213310 Amaranthus hybridus HOM05D002087 ORTHO05D002101 7.7e-10 67.4 104 40.4
BcaNung00238 Brassica carinata HOM05D002087 ORTHO05D002101 7.7e-10 67.4 72 48.6
A01p21650 Brassica napus HOM05D002087 ORTHO05D002101 7.7e-10 67.4 72 48.6
BraA01t02072Z Brassica rapa HOM05D002087 ORTHO05D002101 7.7e-10 67.4 72 48.6
Peaxi162Scf00140g01214 Petunia axillaris HOM05D002087 ORTHO05D002101 7.7e-10 67.4 99 40.4
EL10Ac7g17530 Beta vulgaris HOM05D002087 ORTHO05D002101 1.0e-09 67.0 104 42.3
CAN.G1989.1 Capsicum annuum HOM05D002087 ORTHO05D002101 1.0e-09 67.0 79 45.6
Cc01_g20970 Coffea canephora HOM05D002087 ORTHO05D002101 1.0e-09 67.0 78 43.6
Hund18179 Selenicereus undatus HOM05D002087 ORTHO05D002101 1.0e-09 67.0 102 42.2
Dinv19683 Davidia involucrata HOM05D002087 ORTHO05D002101 1.7e-09 66.2 78 46.2
TAR362G1222 Trochodendron aralioides HOM05D002087 ORTHO05D002101 2.9e-09 65.5 86 48.8
CSS0043962 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 3.8e-09 65.1 79 48.1
Solyc08g074720.2 Solanum lycopersicum HOM05D002087 ORTHO05D002101 3.8e-09 65.1 93 43.0
vmacro15151 Vaccinium macrocarpon HOM05D002087 ORTHO05D002101 3.8e-09 65.1 80 48.8
AUR62008681 Chenopodium quinoa HOM05D002087 ORTHO05D002101 5.0e-09 64.7 104 40.4
Aqoxy5G00766 Aquilegia oxysepala HOM05D002087 ORTHO05D002101 6.5e-09 64.3 56 57.1
Peaxi162Scf00399g00518 Petunia axillaris HOM05D002087 ORTHO05D002101 6.5e-09 64.3 78 46.2
Sp7g14360 Schrenkiella parvula HOM05D002087 ORTHO05D002101 8.5e-09 63.9 98 40.8
Sopen08g023330 Solanum pennellii HOM05D002087 ORTHO05D002101 1.1e-08 63.5 91 42.9
HPP92_025201 Vanilla planifolia HOM05D002087 ORTHO05D002101 1.1e-08 63.5 101 37.6
BolC8t48322H Brassica oleracea HOM05D002087 ORTHO05D002101 1.5e-08 63.2 59 52.5
Nitab4.5_0001639g0100 Nicotiana tabacum HOM05D002087 ORTHO05D002101 1.5e-08 63.2 43 65.1
Nitab4.5_0007333g0010 Nicotiana tabacum HOM05D002087 ORTHO05D002101 1.5e-08 63.2 80 42.5
MBI19_g43555_MAGBIO Magnolia biondii HOM05D002087 ORTHO05D002101 1.9e-08 62.8 69 46.4
MBI19_g46347_MAGBIO Magnolia biondii HOM05D002087 ORTHO05D002101 1.9e-08 62.8 69 46.4
GSVIVG01028033001 Vitis vinifera HOM05D002087 ORTHO05D002101 1.9e-08 62.8 78 43.6
PSO407G0418 Papaver somniferum HOM05D002087 ORTHO05D002101 2.5e-08 62.4 85 43.5
Peaxi162Scf00001g00412 Petunia axillaris HOM05D002087 ORTHO05D002101 2.5e-08 62.4 104 39.4
Atru.chr5.1130 Acer truncatum HOM05D002087 ORTHO05D002101 3.2e-08 62.0 100 42.0
Actinidia14332 Actinidia chinensis HOM05D002087 ORTHO05D002101 3.2e-08 62.0 47 59.6
Actinidia25806 Actinidia chinensis HOM05D002087 ORTHO05D002101 3.2e-08 62.0 82 43.9
Actinidia26754 Actinidia chinensis HOM05D002087 ORTHO05D002101 3.2e-08 62.0 47 59.6
A08p12020 Brassica napus HOM05D002087 ORTHO05D002101 3.2e-08 62.0 39 69.2
BraA08t33194Z Brassica rapa HOM05D002087 ORTHO05D002101 3.2e-08 62.0 39 69.2
AUR62025562 Chenopodium quinoa HOM05D002087 ORTHO05D002101 3.2e-08 62.0 104 39.4
Nitab4.5_0010236g0020 Nicotiana tabacum HOM05D002087 ORTHO05D002101 3.2e-08 62.0 88 42.0
Sp1g01800 Schrenkiella parvula HOM05D002087 ORTHO05D002101 3.2e-08 62.0 103 41.7
Solyc09g075210.3 Solanum lycopersicum HOM05D002087 ORTHO05D002101 3.2e-08 62.0 77 44.2
Oeu011462.1 Olea europaea HOM05D002087 ORTHO05D002101 4.2e-08 61.6 103 41.7
PSO170G6491 Papaver somniferum HOM05D002087 ORTHO05D002101 4.2e-08 61.6 85 43.5
Duzib138G0723 Durio zibethinus HOM05D002087 ORTHO05D002101 5.5e-08 61.2 98 41.8
Migut.D00143 Erythranthe guttata HOM05D002087 ORTHO05D002101 5.5e-08 61.2 102 39.2
unitig_0.g670 Utricularia gibba HOM05D002087 ORTHO05D002101 5.5e-08 61.2 101 38.6
Oeu010665.1 Olea europaea HOM05D002087 ORTHO05D002101 7.2e-08 60.8 80 40.0
Sopen09g030030 Solanum pennellii HOM05D002087 ORTHO05D002101 7.2e-08 60.8 78 44.9
Gorai.004G090800 Gossypium raimondii HOM05D002087 ORTHO05D002101 9.4e-08 60.5 99 41.4
Hma1.2p1_0078F.1_g040440 Hydrangea macrophylla HOM05D002087 ORTHO05D002101 9.4e-08 60.5 80 40.0
Lsat_1_v5_gn_8_164161 Lactuca sativa HOM05D002087 ORTHO05D002101 9.4e-08 60.5 102 39.2
Nitab4.5_0000116g0500 Nicotiana tabacum HOM05D002087 ORTHO05D002101 9.4e-08 60.5 80 41.2
PGSC0003DMG400031788 Solanum tuberosum HOM05D002087 ORTHO05D002101 1.2e-07 60.1 82 42.7
TAR636G0371 Trochodendron aralioides HOM05D002087 ORTHO05D002101 1.2e-07 60.1 80 40.0
COL.COLO4_23330 Corchorus olitorius HOM05D002087 ORTHO05D002101 1.6e-07 59.7 98 40.8
Glyma.19G211600 Glycine max HOM05D002087 ORTHO05D002101 1.6e-07 59.7 79 46.8
Nn3g21519 Nelumbo nucifera HOM05D002087 ORTHO05D002101 1.6e-07 59.7 38 63.2
HPP92_025202 Vanilla planifolia HOM05D002087 ORTHO05D002101 1.6e-07 59.7 101 37.6
CAN.G472.12 Capsicum annuum HOM05D002087 ORTHO05D002101 2.1e-07 59.3 77 46.8
Haze_04952 Corylus avellana HOM05D002087 ORTHO05D002101 2.1e-07 59.3 78 42.3
Rhsim01G0286200 Rhododendron simsii HOM05D002087 ORTHO05D002101 2.1e-07 59.3 80 43.8
unitig_0.g671 Utricularia gibba HOM05D002087 ORTHO05D002101 2.7e-07 58.9 94 34.0
CARHR002140 Cardamine hirsuta HOM05D002087 ORTHO05D002101 3.6e-07 58.5 77 42.9
Glyma.03G215000 Glycine max HOM05D002087 ORTHO05D002101 3.6e-07 58.5 78 47.4
QL12p028285 Quercus lobata HOM05D002087 ORTHO05D002101 3.6e-07 58.5 78 44.9
Cfa005900 Carpinus fangiana HOM05D002087 ORTHO05D002101 4.7e-07 58.2 101 38.6
Gohir.A08G076800 Gossypium hirsutum HOM05D002087 ORTHO05D002101 4.7e-07 58.2 98 39.8
Nn4g25778 Nelumbo nucifera HOM05D002087 ORTHO05D002101 4.7e-07 58.2 102 38.2
SalBow3G0131 Salvia bowleyana HOM05D002087 ORTHO05D002101 4.7e-07 58.2 80 41.2
Sed0009339 Sechium edule HOM05D002087 ORTHO05D002101 4.7e-07 58.2 98 39.8
PGSC0003DMG400017936 Solanum tuberosum HOM05D002087 ORTHO05D002101 4.7e-07 58.2 36 66.7
TAR365G0861 Trochodendron aralioides HOM05D002087 ORTHO05D002101 4.7e-07 58.2 82 43.9
BcaC07g37937 Brassica carinata HOM05D002087 ORTHO05D002101 6.1e-07 57.8 75 48.0
CiPaw.07G110400 Carya illinoinensis HOM05D002087 ORTHO05D002101 6.1e-07 57.8 79 44.3
Duzib211G0093 Durio zibethinus HOM05D002087 ORTHO05D002101 6.1e-07 57.8 74 45.9
Gohir.D08G086400 Gossypium hirsutum HOM05D002087 ORTHO05D002101 6.1e-07 57.8 95 41.1
Ah.15g093120 Amaranthus hybridus HOM05D002087 ORTHO05D002101 8.0e-07 57.4 104 36.5
AL1G12210 Arabidopsis lyrata HOM05D002087 ORTHO05D002101 8.0e-07 57.4 78 43.6
CDE05G2669 Ceratophyllum demersum HOM05D002087 ORTHO05D002101 8.0e-07 57.4 87 40.2
Lsat_1_v5_gn_9_5400 Lactuca sativa HOM05D002087 ORTHO05D002101 8.0e-07 57.4 45 48.9
Thhalv10009185m.g Eutrema salsugineum HOM05D002087 ORTHO05D002101 1.0e-06 57.0 102 38.2
Oeu046672.1 Olea europaea HOM05D002087 ORTHO05D002101 1.0e-06 57.0 79 43.0
Phvul.001G207800 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 1.0e-06 57.0 83 45.8
Solyc06g009140.3 Solanum lycopersicum HOM05D002087 ORTHO05D002101 1.0e-06 57.0 78 41.0
Sopen06g003900 Solanum pennellii HOM05D002087 ORTHO05D002101 1.0e-06 57.0 80 41.2
Thecc.01G302000 Theobroma cacao HOM05D002087 ORTHO05D002101 1.0e-06 57.0 98 40.8
TAR365G1114 Trochodendron aralioides HOM05D002087 ORTHO05D002101 1.0e-06 57.0 82 42.7
CSS0009418 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 1.4e-06 56.6 45 57.8
CSS0024122 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 1.4e-06 56.6 71 40.8
CSS0040472 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 1.4e-06 56.6 71 40.8
MELO3C015995.2 Cucumis melo HOM05D002087 ORTHO05D002101 1.4e-06 56.6 88 40.9
DCAR_018327 Daucus carota HOM05D002087 ORTHO05D002101 1.4e-06 56.6 63 46.0
TAR365G0362 Trochodendron aralioides HOM05D002087 ORTHO05D002101 1.4e-06 56.6 77 46.8
ClCG10G011030 Citrullus lanatus HOM05D002087 ORTHO05D002101 1.8e-06 56.2 108 36.1
Gohir.D08G086300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 2.3e-06 55.8 100 40.0
HanXRQChr15g0465591 Helianthus annuus HOM05D002087 ORTHO05D002101 2.3e-06 55.8 79 41.8
Lj1A23T85 Lonicera japonica HOM05D002087 ORTHO05D002101 2.3e-06 55.8 42 54.8
MBI18_g24873_MAGBIO Magnolia biondii HOM05D002087 ORTHO05D002101 2.3e-06 55.8 104 37.5
Sed0008157 Sechium edule HOM05D002087 ORTHO05D002101 2.3e-06 55.8 87 39.1
BcaB03g15762 Brassica carinata HOM05D002087 ORTHO05D002101 3.0e-06 55.5 79 41.8
BcaC05g24591 Brassica carinata HOM05D002087 ORTHO05D002101 3.0e-06 55.5 79 41.8
A10p01480 Brassica napus HOM05D002087 ORTHO05D002101 3.0e-06 55.5 80 41.2
C05p01450 Brassica napus HOM05D002087 ORTHO05D002101 3.0e-06 55.5 79 41.8
BolC5t28927H Brassica oleracea HOM05D002087 ORTHO05D002101 3.0e-06 55.5 79 41.8
MELO3C017949.2 Cucumis melo HOM05D002087 ORTHO05D002101 3.0e-06 55.5 36 63.9
Nitab4.5_0005805g0050 Nicotiana tabacum HOM05D002087 ORTHO05D002101 3.0e-06 55.5 59 50.8
THA.LOC104801278 Tarenaya hassleriana HOM05D002087 ORTHO05D002101 3.0e-06 55.5 97 40.2
Gorai.004G090700 Gossypium raimondii HOM05D002087 ORTHO05D002101 4.0e-06 55.1 114 37.7
Zm00001eb130570 Zea mays HOM05D002087 ORTHO05D002101 4.0e-06 55.1 81 39.5
Nitab4.5_0001639g0070 Nicotiana tabacum HOM05D002087 ORTHO05D002101 5.2e-06 54.7 42 59.5
CSS0008385 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 6.7e-06 54.3 90 35.6
HanXRQChr15g0465601 Helianthus annuus HOM05D002087 ORTHO05D002101 6.7e-06 54.3 44 52.3
Lsat_1_v5_gn_9_5460 Lactuca sativa HOM05D002087 ORTHO05D002101 6.7e-06 54.3 82 35.4
Sp6g02260 Schrenkiella parvula HOM05D002087 ORTHO05D002101 6.7e-06 54.3 77 41.6
TWI14G1194 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 6.7e-06 54.3 94 41.5
TAR365G0147 Trochodendron aralioides HOM05D002087 ORTHO05D002101 6.7e-06 54.3 33 72.7
Cpa.g.sc9.251 Carica papaya HOM05D002087 ORTHO05D002101 8.8e-06 53.9 82 39.0
MELO3C017950.2 Cucumis melo HOM05D002087 ORTHO05D002101 8.8e-06 53.9 80 40.0
Thhalv10029091m.g Eutrema salsugineum HOM05D002087 ORTHO05D002101 8.8e-06 53.9 77 40.3
Gohir.A08G076700 Gossypium hirsutum HOM05D002087 ORTHO05D002101 8.8e-06 53.9 76 44.7
PSO724G1385 Papaver somniferum HOM05D008314 ORTHO05D010369 8.8e-06 53.9 87 40.2
vmacro15221 Vaccinium macrocarpon HOM05D002087 ORTHO05D002101 8.8e-06 53.9 51 49.0


User provided reference genes

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