Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 3.0e-48 194.9 101 100.0
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 6.7e-24 114.0 67 86.6
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 6.7e-24 114.0 67 86.6
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.4e-21 105.5 68 82.4
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 1.5e-20 102.8 66 74.2
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 4.5e-20 101.3 67 73.1
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 5.9e-20 100.9 67 73.1
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 1.0e-19 100.1 67 73.1
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 2.9e-19 98.6 66 72.7
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 6.5e-19 97.4 66 69.7
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 2.7e-17 92.0 64 67.2
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 6.1e-17 90.9 68 66.2
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 1.8e-16 89.4 64 64.1
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 6.7e-16 87.4 77 58.4
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 8.8e-16 87.0 77 55.8
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 8.8e-16 87.0 59 69.5
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 1.1e-15 86.7 63 61.9
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 2.0e-15 85.9 86 54.7
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 3.3e-15 85.1 59 62.7
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 3.3e-15 85.1 65 60.0
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 7.4e-15 84.0 65 56.9
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 9.7e-15 83.6 65 58.5
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 9.7e-15 83.6 65 60.0
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 1.3e-14 83.2 59 62.7
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 1.7e-14 82.8 74 52.7
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 1.7e-14 82.8 65 60.0
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 1.7e-14 82.8 68 60.3
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 1.7e-14 82.8 61 60.7
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 2.2e-14 82.4 68 60.3
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 2.2e-14 82.4 58 62.1
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 2.8e-14 82.0 68 58.8
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 3.7e-14 81.6 59 62.7
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 4.8e-14 81.3 77 51.9
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 6.3e-14 80.9 64 56.2
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 6.3e-14 80.9 85 48.2
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 8.2e-14 80.5 63 57.1
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 8.2e-14 80.5 58 63.8
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 1.1e-13 80.1 68 57.4
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 1.1e-13 80.1 58 63.8
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-13 80.1 58 63.8
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-13 80.1 58 63.8
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-13 80.1 58 63.8
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 1.1e-13 80.1 80 50.0
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 1.4e-13 79.7 59 61.0
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 1.4e-13 79.7 70 58.6
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 2.4e-13 79.0 68 54.4
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 2.4e-13 79.0 59 59.3
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 2.4e-13 79.0 64 57.8
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 3.1e-13 78.6 78 50.0
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.1e-13 78.6 58 62.1
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 3.1e-13 78.6 58 62.1
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 3.1e-13 78.6 67 56.7
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 4.1e-13 78.2 58 58.6
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 5.3e-13 77.8 59 57.6
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 5.3e-13 77.8 70 55.7
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 7.0e-13 77.4 75 50.7
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 9.1e-13 77.0 59 55.9
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 1.2e-12 76.6 59 55.9
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 1.6e-12 76.3 64 56.2
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 1.6e-12 76.3 58 56.9
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 1.6e-12 76.3 67 52.2
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 2.0e-12 75.9 64 54.7
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 2.6e-12 75.5 77 49.4
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 2.6e-12 75.5 69 50.7
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 3.5e-12 75.1 66 53.0
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 3.5e-12 75.1 63 58.7
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 3.5e-12 75.1 58 56.9
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 3.5e-12 75.1 58 58.6
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 4.5e-12 74.7 59 55.9
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 4.5e-12 74.7 64 54.7
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 4.5e-12 74.7 78 48.7
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 5.9e-12 74.3 58 56.9
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 1.3e-11 73.2 59 52.5
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 2.2e-11 72.4 60 58.3
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 3.8e-11 71.6 40 82.5
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 5.0e-11 71.2 59 50.8
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 5.0e-11 71.2 59 50.8
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 5.0e-11 71.2 59 50.8
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 5.0e-11 71.2 59 50.8
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 5.0e-11 71.2 69 44.9
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 6.5e-11 70.9 57 52.6
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 1.9e-10 69.3 81 44.4
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 7.2e-10 67.4 56 55.4
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 1.6e-09 66.2 58 55.2
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 2.1e-09 65.9 45 64.4
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 1.4e-08 63.2 37 78.4
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.4e-08 63.2 37 75.7
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.3e-08 62.4 94 39.4
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 4.0e-08 61.6 50 56.0
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-07 60.1 88 42.0
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 2.0e-07 59.3 34 79.4
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 4.4e-07 58.2 59 49.2
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 5.7e-07 57.8 42 64.3


User provided reference genes

Program Settings