Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.8e-128 462.6 233 100.0
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 5.8e-95 351.3 235 79.6
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.3e-94 350.1 235 79.1
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 9.2e-93 344.0 235 78.7
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 6.0e-92 341.3 235 77.9
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.2e-87 327.0 236 73.3
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 2.6e-87 325.9 237 73.8
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 4.4e-87 325.1 236 75.0
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.2e-86 322.8 235 73.6
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 2.9e-86 322.4 235 73.6
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 2.9e-86 322.4 226 76.1
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 6.4e-86 321.2 233 74.2
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 6.4e-86 321.2 242 72.7
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.1e-85 320.5 226 76.1
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.1e-85 320.5 238 73.5
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 1.9e-85 319.7 233 74.2
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.4e-85 319.3 235 72.8
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 3.2e-85 318.9 236 74.2
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 7.1e-85 317.8 235 72.8
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 9.2e-85 317.4 236 73.7
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.2e-84 317.0 226 77.9
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.6e-84 316.6 236 72.9
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 2.1e-84 316.2 238 72.7
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 2.1e-84 316.2 236 72.9
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 2.1e-84 316.2 238 73.1
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 2.7e-84 315.8 224 77.2
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 2.7e-84 315.8 236 73.3
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.7e-84 315.8 226 74.3
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 3.5e-84 315.5 224 77.2
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.5e-84 315.5 235 72.8
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 3.5e-84 315.5 236 71.6
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 4.6e-84 315.1 235 72.3
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 4.6e-84 315.1 236 72.5
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 4.6e-84 315.1 236 74.2
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 6.0e-84 314.7 236 72.0
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.0e-84 314.7 250 70.0
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 6.0e-84 314.7 238 72.7
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 7.8e-84 314.3 228 76.3
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 7.8e-84 314.3 236 72.9
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.3e-83 313.5 238 71.8
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 1.7e-83 313.2 228 72.8
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 2.3e-83 312.8 235 72.8
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.3e-83 312.8 236 72.5
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.0e-83 312.4 236 72.5
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 5.1e-83 311.6 231 73.6
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 6.6e-83 311.2 236 71.2
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 8.6e-83 310.8 231 74.5
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 8.6e-83 310.8 233 73.8
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 1.5e-82 310.1 236 72.5
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.5e-82 310.1 243 70.4
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.5e-82 309.3 239 72.0
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 3.3e-82 308.9 249 69.9
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 3.3e-82 308.9 225 75.6
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.3e-82 308.5 239 72.4
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 4.3e-82 308.5 235 71.5
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 4.3e-82 308.5 234 72.2
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 9.5e-82 307.4 235 71.9
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 9.5e-82 307.4 236 70.3
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 9.5e-82 307.4 234 70.9
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 9.5e-82 307.4 231 72.7
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 1.2e-81 307.0 235 71.1
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.2e-81 307.0 234 70.5
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.6e-81 306.6 243 69.5
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 2.1e-81 306.2 232 72.0
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 2.8e-81 305.8 237 70.9
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 2.8e-81 305.8 236 71.2
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 3.6e-81 305.4 233 72.1
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 3.6e-81 305.4 232 72.0
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 4.7e-81 305.1 239 71.5
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 6.2e-81 304.7 232 71.6
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 1.1e-80 303.9 238 69.7
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.4e-80 303.5 226 73.0
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.4e-80 303.5 238 69.3
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.8e-80 303.1 234 70.9
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.3e-80 302.8 231 71.9
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 5.2e-80 301.6 233 70.4
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.5e-79 300.1 235 71.1
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 1.5e-79 300.1 234 70.5
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.5e-79 300.1 236 69.9
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 2.0e-79 299.7 227 74.4
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.0e-79 299.7 236 68.6
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 2.6e-79 299.3 238 70.2
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 4.4e-79 298.5 237 69.2
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 4.4e-79 298.5 236 71.6
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 4.4e-79 298.5 237 69.2
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 5.8e-79 298.1 233 70.0
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.8e-79 298.1 235 68.9
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 9.9e-79 297.4 245 67.3
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.3e-78 297.0 238 68.9
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 1.3e-78 297.0 288 60.1
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 1.7e-78 296.6 237 70.0
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.7e-78 296.6 241 66.8
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.7e-78 296.6 241 66.4
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.7e-78 296.6 231 71.4
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.9e-78 295.8 224 72.3
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 3.8e-78 295.4 237 70.5
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 8.4e-78 294.3 252 66.7
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.9e-77 293.1 232 69.4
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 2.4e-77 292.7 251 66.9
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 5.4e-77 291.6 222 73.0
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 2.7e-76 289.3 237 69.2
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 3.5e-76 288.9 230 68.7
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 6.0e-76 288.1 207 73.4
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.0e-75 287.3 234 69.2
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.3e-75 287.0 222 69.8
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.3e-75 287.0 193 79.3
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 3.0e-75 285.8 234 67.1
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 3.9e-75 285.4 234 67.1
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 5.1e-75 285.0 219 72.6
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.1e-74 283.9 241 65.6
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.5e-74 283.5 241 65.1
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 7.3e-74 281.2 234 65.8
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 9.6e-74 280.8 234 64.5
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 9.6e-74 280.8 240 66.7
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.6e-73 280.0 237 66.7
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.6e-73 280.0 226 69.5
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 3.6e-73 278.9 234 65.4
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 3.1e-72 275.8 226 68.1
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 3.4e-71 272.3 236 63.6
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 3.2e-69 265.8 252 61.5
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 1.2e-68 263.8 225 68.0
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 1.3e-67 260.4 233 62.7
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.9e-66 256.5 233 63.1
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 9.0e-64 247.7 230 60.9
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 3.2e-61 239.2 206 67.0
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.7e-60 236.1 176 72.7
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.6e-60 235.3 160 78.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.0e-60 235.0 202 61.9
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 7.9e-60 234.6 200 63.5
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.0e-59 234.2 233 59.2
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.8e-59 233.4 161 77.0
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 1.1e-58 230.7 229 56.8
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 3.7e-57 225.7 204 60.8
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.2e-55 220.7 213 54.9
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 3.4e-55 219.2 195 59.0
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 5.8e-55 218.4 159 71.1
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.0e-51 207.6 194 55.7
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.3e-50 202.2 187 58.3
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 1.6e-49 200.3 158 64.6
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 8.2e-49 198.0 177 59.9
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.4e-40 170.6 145 66.9
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 3.1e-40 169.5 151 63.6
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 3.1e-40 169.5 121 77.7
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 7.6e-39 164.9 158 57.6
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.1e-37 161.0 199 46.2
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-37 161.0 235 49.4
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.5e-31 139.0 112 64.3
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.1e-28 130.2 106 61.3
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.3e-26 122.9 98 70.4
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.7e-25 119.4 82 76.8
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 4.1e-24 115.9 72 77.8
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 1.3e-22 110.9 62 83.9
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 8.5e-14 81.6 66 69.7
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.2e-09 67.0 70 50.0
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 6.3e-09 65.5 85 49.4
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.1e-08 64.7 76 48.7
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 4.1e-08 62.8 39 79.5
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.5e-06 55.5 39 66.7


User provided reference genes

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