Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 2.6e-52 208.4 100 100.0
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 2.0e-28 129.0 70 88.6
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 2.0e-28 129.0 70 88.6
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 9.9e-28 126.7 70 87.1
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 1.5e-23 112.8 70 75.7
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 2.1e-22 109.0 70 74.3
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 1.4e-21 106.3 70 71.4
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 4.0e-21 104.8 69 72.5
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 7.6e-20 100.5 68 66.2
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 7.6e-20 100.5 73 68.5
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 1.3e-19 99.8 90 56.7
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.7e-19 99.4 73 67.1
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 2.2e-19 99.0 70 62.9
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 2.9e-19 98.6 70 67.1
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 3.8e-19 98.2 70 65.7
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 6.4e-19 97.4 70 67.1
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 6.4e-19 97.4 70 67.1
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 6.4e-19 97.4 73 64.4
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.1e-18 96.7 70 67.1
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 1.9e-18 95.9 72 65.3
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 1.9e-18 95.9 70 65.7
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.9e-18 95.9 69 60.9
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 2.4e-18 95.5 70 65.7
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 2.4e-18 95.5 70 64.3
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 3.2e-18 95.1 70 64.3
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 4.2e-18 94.7 66 66.7
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 4.2e-18 94.7 70 62.9
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 5.4e-18 94.4 72 61.1
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 5.4e-18 94.4 73 61.6
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 7.1e-18 94.0 70 64.3
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 9.3e-18 93.6 70 62.9
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 9.3e-18 93.6 67 64.2
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 9.3e-18 93.6 71 59.2
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 1.2e-17 93.2 70 64.3
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 1.2e-17 93.2 70 60.0
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 1.6e-17 92.8 70 61.4
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 1.6e-17 92.8 70 64.3
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 1.6e-17 92.8 70 64.3
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 2.1e-17 92.4 70 62.9
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 2.1e-17 92.4 70 62.9
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 2.7e-17 92.0 70 62.9
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 2.7e-17 92.0 73 63.0
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 2.7e-17 92.0 70 62.9
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 2.7e-17 92.0 70 61.4
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 4.6e-17 91.3 70 61.4
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 4.6e-17 91.3 69 60.9
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 4.6e-17 91.3 70 61.4
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 4.6e-17 91.3 67 62.7
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 4.6e-17 91.3 67 62.7
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 6.0e-17 90.9 70 64.3
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 6.0e-17 90.9 70 65.7
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 7.9e-17 90.5 70 64.3
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 7.9e-17 90.5 70 62.9
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 1.8e-16 89.4 72 59.7
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 1.8e-16 89.4 70 64.3
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 2.3e-16 89.0 70 61.4
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 3.0e-16 88.6 70 61.4
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 3.0e-16 88.6 70 64.3
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 3.0e-16 88.6 70 61.4
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 3.0e-16 88.6 70 60.0
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 3.9e-16 88.2 70 58.6
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 5.1e-16 87.8 69 59.4
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 5.1e-16 87.8 69 59.4
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 5.1e-16 87.8 70 61.4
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 6.7e-16 87.4 70 58.6
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 6.7e-16 87.4 70 57.1
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 6.7e-16 87.4 70 57.1
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 6.7e-16 87.4 70 57.1
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 6.7e-16 87.4 70 57.1
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 6.7e-16 87.4 70 58.6
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 8.7e-16 87.0 67 61.2
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 1.1e-15 86.7 78 52.6
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 1.5e-15 86.3 70 60.0
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 1.5e-15 86.3 70 60.0
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 1.5e-15 86.3 70 60.0
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 1.5e-15 86.3 70 55.7
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 1.9e-15 85.9 69 58.0
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.9e-15 85.9 70 55.7
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 3.3e-15 85.1 69 55.1
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 3.3e-15 85.1 69 58.0
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 4.3e-15 84.7 70 54.3
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 5.6e-15 84.3 70 58.6
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 5.6e-15 84.3 70 58.6
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 5.6e-15 84.3 70 60.0
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 9.6e-15 83.6 64 62.5
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 9.6e-15 83.6 71 57.7
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 2.1e-14 82.4 71 56.3
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 2.1e-14 82.4 69 56.5
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.4e-13 79.7 72 52.8
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 6.9e-13 77.4 70 55.7
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 9.0e-13 77.0 72 54.2
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 3.4e-12 75.1 74 52.7
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 4.5e-12 74.7 70 52.9
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 4.5e-12 74.7 70 52.9
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 5.8e-12 74.3 72 50.0
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 7.6e-12 73.9 70 52.9
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 7.6e-12 73.9 70 52.9
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 1.0e-11 73.6 72 48.6
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 2.9e-11 72.0 70 50.0
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 2.9e-11 72.0 70 50.0
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 1.4e-10 69.7 90 42.2
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 2.5e-10 68.9 70 51.4
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 9.3e-10 67.0 69 50.7
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 9.6e-07 57.0 77 41.6
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 9.6e-07 57.0 77 41.6
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 2.1e-06 55.8 35 68.6
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 2.8e-06 55.5 39 61.5
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 8.2e-06 53.9 70 48.6


User provided reference genes

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